FF:14320-155D9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005354 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005354!sRNA-Seq@SAMD00005354 | ||
|accession_numbers=CAGE;DRX008041;DRR008913;DRZ000338;DRZ001723;DRZ011688;DRZ013073 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057108;DRR062867;DRZ007943!sRNA-Seq;DRX036989;DRR041355;DRZ006997 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000408,FF:0000350,FF:0000139,FF:0000406,FF:0000671 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14320-155D9 | |id=FF:14320-155D9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000671 | ||
|is_obsolete= | |||
|library_id=CNhs12584 | |||
|library_id_phase_based=2:CNhs12584 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14320 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ACTTGA.14320 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14320 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ACTTGA.14320 | |||
|name=Preadipocyte - breast, donor2 (nuclear fraction) | |name=Preadipocyte - breast, donor2 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12584,LSID912,release012,COMPLETED | |profile_hcage=CNhs12584,LSID912,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0310016407534881,0,0,0,0,-0.160318030086386,0,0.0123996589244886,-0.169168101273614,0,0,0,0,0,0,0,0,0,0,0,0.0620032815069762,0,-0.0370726947979831,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0256658170864679,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.0620032815069762,0.0192579543078394,0,0,0.149969074804672,0.0620032815069762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0163874620357753,0,0,0,0,0,0,-0.123129183993536,0.0310016407534881,0,0,-0.053420845176082,-0.0062678202512053,0,0.684535621881648,0.08223381854984,0.207862599606862,0.278752818569031,-0.107475560047407,0,0,0,0,0,0,0,0,0,0,0.0891267985287106,0,0,0,0,0,0,0.00755770588096995,0,0,0,0.0195955553224791,-0.0378338054511293,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.278752818569031,0,0.207862599606862,0,0,0,0,0.0620032815069762,0,0.684535621881648,0,0,0.0696788343274804,0,-0.19061043881061,-0.143515142523472,0,0,0.0872256882330702,0,0.16446763709968,0,0.158428854806522,0.0620032815069762,0,0.0620032815069762,0.0620032815069762,0,0.716047597879698,0,0.872114378485063,0,0,0,0,0.005034131424168,0.709937003200469,0,0.074791554874936,0.385210075214428,0,0.116250315550445,0,0,0.0681369143116787,0,-0.0588762022867644,0.474649089602166,0,0.036236697284537,0.15215010282568,0,0,0,0.0321853184752915,0.0159112107846331,0,0,0.494889659139548,0.298968631487995,0,0,0.792850296320219,0,-0.245309797649738,0.223839065412895,0,0,0,0,0.116250315550445,0,0,0,0,0,0,0,0,0.360319292685848,0.517178868153293,0.0470621595832029,0,0.0620032815069762,0,-0.0605731154668239,0.0620032815069762,0,-0.257035840406122,-0.234485697746414,0.0613273217634245,-0.494752715372562,0,-0.240386445502937,-0.182896573233823,-0.101895016719705,-0.053420845176082,0.328995797038186,0.23946074572439,0,-0.0777270197572524,0.0282833286540997,-0.0470807235394059,-0.128033733913203,0,0.460442353055408,0.113306591386943,0.0620032815069762,0,0,0.377583651107872,0,-0.0393019581544298,0.258372500284521,0.0340900666089307,0.148054734146495,-0.140472407781323,0.029525464154488,0.174761701849026,-0.0395325284566706,-0.173960672955197,-0.0502225177865813,0.0438308117555783,0,0.0620032815069762,0,-0.168462491943182,-0.381999295429875,-0.186383707904442,0,-0.0545349965367432,-0.00634097957039202,0.0310016407534881,-0.34359756101589,-0.359554828145292,0,0.165625333117671,-0.00332201687792655,0.0620032815069762,0,0,0,0.247312702017769,-0.032983320759427,0.0700211048468617,-0.170852280048569,0,0.098303983298658,0.0758417786170835,-0.108891995449218,0,0.101846835722886,-0.084006615950418,0.0751725295686356,-0.117195896915049,0.0113175344629068,-0.161308172489527,0.0273627953519509,0.105267757394072,-0.0745389220093868,0.00355645469515099,-0.173102675850148,0.0852496073827425,-0.284325991307976,0.485254687769111,-0.0623044150864373,0.159185869542481,0,0.349794271264464,-0.432185429603755,0,-0.109424766891691,0,0.419539727352047,0,0.0408074846395141,0,-0.168709642724406,0.0169355064523432,-0.37728609307371,-0.202354661981215,0,-0.0199372145314383,-0.540818235756205,0,-0.135723143846782,-0.0030828450488308,0.116250315550445,-0.0883638018276631,-0.140326708586999,0.519909037114612,0.199388126966809,0,0.184910630278325,0,0,0.227935460224971,0.0118366642533802,0,-0.0841590228828095,0.0163874620357753,0.0663162180474328,0.131341628582835,0,0,0.0248319212500027,0,0.116250315550445,-0.107828831769139,0.16446763709968,-0.143385677549309,-0.137076025936311,0.0083142239802374,1.36389945451132,0.0213875671233447,0,0.105948013976223,0,-0.0153422207202415,0,0,-0.109522320273762,0,0,0.0310016407534881,0.283475779941398,0.0370305295534876,0.0620032815069762,0,0,0,0,0,0.00669181909094907,0.30557456364381,-0.0713575502750498,0,-0.29232221248712,0,0.116250315550445,0,0.0620032815069762,0,-0.0376636760081868,0,0.16446763709968,1.17670043675554,-0.10920134774363,-0.12301741567642,0,0,0,0,0.359731811440011,0.113621147518321,0,0.0326049306020479,0,0,0,0,-0.0241377082822352,0,0,0,0.0620032815069762,-0.057730457053664,0.246206518577138,0,0,0,-0.27695440160179,0,0,0,0.0610273900909762,-0.0716556573813056,0,0.207862599606862,0.529577189537054,0,-0.248239759000866,-0.0815818795468414,0,-0.0268251665437332,0.326120353805285,-0.201848460960654,0.0212942128160025,0.116250315550445,-0.261347131789888,0,0.230175901722131,0.101958445155441,0,0.0620032815069762,0.0208418501717933,0,0,0,0,0,0.16446763709968,-0.049846875300076,0.296409002886215,0,0.0260612253574277,0,0,0,0,0,0,0,0,-0.183511973975964,-0.0922240566585104,0.453554336291796,0,0,0,0,0,0,-0.0241060230789031,-0.190216526824865,0,0,0.049039676784184,0,0,0,0,0,-0.0178716033714462,0.0891267985287106,0,0.116250315550445,0,0,0.0192579543078394,0,0,0,0.0620032815069762,-0.400339484054204,0,0,0.0061136477478842,0,0.0066311335184716,0,0,0,0,0.0079326211633047,0,0,0,0,0,0,-0.00706877048500316,0.0123996589244886,0,0,0,0,0,0,0,0.0420244114069544,0,0.0620032815069762,0,0,1.2198430244941,0,0,0,0.393302847259735,0,-0.160318030086386,0,0,0.16446763709968,0,0,0,0,0,0,0,0.207862599606862,0,0,0,0,0,0,0.0581251577752225,0.08223381854984,0,0,0.607294216911862,0.0715987940694874,0.493214287533601,-0.151652360735041,0,0,0.216344251389882,0,0,0,0,0,0,0.0267847337466952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123656351008885,0.075315719401626,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.202811814100253,0.411799670358387,-0.0399497725187605,0,0,0,0.0278482460673848,0,0,-0.0294317762703751,0.0620032815069762,0.451990421982623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0370726947979831,0,0,0,0,0,0,0,0,0,0,0,0,0.0310016407534881,0,0,0,0,0,0.116250315550445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00300972252192843,0.116250315550445,0,0,0,0,0,0,0.1162503155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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155D9 | |rna_tube_id=155D9 | ||
|rna_weight_ug=7.25625 | |rna_weight_ug=7.25625 | ||
|rnaseq_library_id=RDhi10020!SRhi10009.ACTTGA | |||
|sample_age=40 | |sample_age=40 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=F-BR-F | |sample_cell_catalog=F-BR-F | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.6092298507722e-211!GO:0043226;organelle;4.37846769538286e-168!GO:0043229;intracellular organelle;8.35365703155308e-168!GO:0043231;intracellular membrane-bound organelle;1.2282544717959e-162!GO:0043227;membrane-bound organelle;2.29254169950368e-162!GO:0005737;cytoplasm;1.56468114118163e-159!GO:0044444;cytoplasmic part;5.93362494028206e-112!GO:0044422;organelle part;2.14374225948825e-111!GO:0044446;intracellular organelle part;4.593958798528e-110!GO:0044238;primary metabolic process;4.6564702468543e-83!GO:0005515;protein binding;2.99011170676105e-81!GO:0044237;cellular metabolic process;6.87953043828648e-79!GO:0043170;macromolecule metabolic process;3.6831748427004e-78!GO:0032991;macromolecular complex;3.45732827860694e-74!GO:0005634;nucleus;2.13638818647404e-67!GO:0044428;nuclear part;1.10133960568507e-63!GO:0043233;organelle lumen;6.62270688567733e-61!GO:0031974;membrane-enclosed lumen;6.62270688567733e-61!GO:0030529;ribonucleoprotein complex;3.34814311842258e-54!GO:0003723;RNA binding;1.6536658027156e-53!GO:0016043;cellular component organization and biogenesis;2.4231625286833e-51!GO:0015031;protein transport;5.3140780673839e-45!GO:0043283;biopolymer metabolic process;1.56360980565186e-44!GO:0033036;macromolecule localization;3.62752327190861e-44!GO:0019538;protein metabolic process;4.46758770225134e-43!GO:0045184;establishment of protein localization;7.56684793546867e-41!GO:0031090;organelle membrane;8.87800750590267e-41!GO:0008104;protein localization;1.35636008028587e-40!GO:0006396;RNA processing;1.35636008028587e-40!GO:0005739;mitochondrion;1.61049904603211e-40!GO:0043234;protein complex;3.3458326994394e-40!GO:0031981;nuclear lumen;4.5209437228157e-40!GO:0046907;intracellular transport;5.50487864104345e-39!GO:0010467;gene expression;6.78065713889278e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.20390436696741e-37!GO:0044260;cellular macromolecule metabolic process;4.61884322187611e-37!GO:0044267;cellular protein metabolic process;3.6136914942794e-36!GO:0016071;mRNA metabolic process;5.41195910366867e-35!GO:0006412;translation;3.07788851378532e-32!GO:0006886;intracellular protein transport;2.57229999718306e-31!GO:0005829;cytosol;1.1992521601216e-30!GO:0006397;mRNA processing;3.60363807116744e-30!GO:0008380;RNA splicing;5.99158855476437e-30!GO:0031967;organelle envelope;1.26510473399056e-29!GO:0031975;envelope;1.89736243276895e-29!GO:0006996;organelle organization and biogenesis;3.61258216007582e-28!GO:0005840;ribosome;1.38924855803036e-27!GO:0009058;biosynthetic process;4.52804084998786e-27!GO:0044429;mitochondrial part;6.1229202128461e-27!GO:0065003;macromolecular complex assembly;8.12157426343423e-27!GO:0000166;nucleotide binding;8.1578298388558e-27!GO:0005654;nucleoplasm;8.08142987767327e-26!GO:0044249;cellular biosynthetic process;1.66931070637344e-25!GO:0022607;cellular component assembly;6.3398235959031e-25!GO:0051649;establishment of cellular localization;1.00110143172689e-24!GO:0051641;cellular localization;1.50662505615743e-24!GO:0009059;macromolecule biosynthetic process;2.58848176044291e-24!GO:0043228;non-membrane-bound organelle;9.78671127645882e-24!GO:0043232;intracellular non-membrane-bound organelle;9.78671127645882e-24!GO:0003735;structural constituent of ribosome;2.92356299481449e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.82690756294837e-23!GO:0003676;nucleic acid binding;2.80408378456921e-22!GO:0016462;pyrophosphatase activity;2.68873339672507e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.75401403521513e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.65085486737328e-21!GO:0005681;spliceosome;6.31257945358737e-21!GO:0017111;nucleoside-triphosphatase activity;7.80667420813518e-21!GO:0016070;RNA metabolic process;7.98408680407662e-21!GO:0044451;nucleoplasm part;9.35107264102694e-21!GO:0006259;DNA metabolic process;1.35334372974366e-20!GO:0033279;ribosomal subunit;2.266266235924e-20!GO:0017076;purine nucleotide binding;2.16838791864447e-19!GO:0032553;ribonucleotide binding;4.00909719264584e-19!GO:0032555;purine ribonucleotide binding;4.00909719264584e-19!GO:0048770;pigment granule;1.43219208126849e-18!GO:0042470;melanosome;1.43219208126849e-18!GO:0005783;endoplasmic reticulum;1.9745127087664e-18!GO:0016874;ligase activity;4.94807855269786e-18!GO:0012505;endomembrane system;8.40220812643314e-18!GO:0008134;transcription factor binding;8.46675569191879e-18!GO:0005740;mitochondrial envelope;9.21243826380858e-18!GO:0006457;protein folding;1.59732417641605e-17!GO:0005524;ATP binding;2.13105520024339e-17!GO:0031966;mitochondrial membrane;2.9790035884575e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.45887260423776e-17!GO:0030554;adenyl nucleotide binding;4.50969529384083e-17!GO:0048193;Golgi vesicle transport;5.48409827435637e-17!GO:0032559;adenyl ribonucleotide binding;5.48409827435637e-17!GO:0016192;vesicle-mediated transport;4.2197791965241e-16!GO:0019866;organelle inner membrane;4.97972673948094e-16!GO:0005794;Golgi apparatus;6.25787597377259e-16!GO:0006512;ubiquitin cycle;8.44332792878153e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.86255908049969e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.89747815091311e-15!GO:0019941;modification-dependent protein catabolic process;4.03288231933061e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.03288231933061e-15!GO:0044257;cellular protein catabolic process;4.60771174854067e-15!GO:0022618;protein-RNA complex assembly;4.62411531027703e-15!GO:0005743;mitochondrial inner membrane;4.68245507484427e-15!GO:0044265;cellular macromolecule catabolic process;5.00923419427339e-15!GO:0008135;translation factor activity, nucleic acid binding;6.49104912243339e-15!GO:0006119;oxidative phosphorylation;1.1604041657921e-14!GO:0006605;protein targeting;1.17943978512131e-14!GO:0005730;nucleolus;3.60926167300753e-14!GO:0044432;endoplasmic reticulum part;3.82736340523121e-14!GO:0007049;cell cycle;4.07065698916121e-14!GO:0043285;biopolymer catabolic process;4.91916057717154e-14!GO:0044445;cytosolic part;2.41030496849287e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.01346488658716e-13!GO:0031965;nuclear membrane;3.53349394755079e-13!GO:0009057;macromolecule catabolic process;4.58915579111864e-13!GO:0030163;protein catabolic process;5.27227517674205e-13!GO:0051186;cofactor metabolic process;6.31295090833755e-13!GO:0005635;nuclear envelope;1.48221688271714e-12!GO:0004386;helicase activity;1.71903261286665e-12!GO:0051082;unfolded protein binding;2.12639694359149e-12!GO:0016887;ATPase activity;2.23486746985483e-12!GO:0044248;cellular catabolic process;2.37019208380973e-12!GO:0043412;biopolymer modification;3.01032070092377e-12!GO:0044455;mitochondrial membrane part;3.28732497702039e-12!GO:0006974;response to DNA damage stimulus;3.98354985225108e-12!GO:0031980;mitochondrial lumen;4.51108912872999e-12!GO:0005759;mitochondrial matrix;4.51108912872999e-12!GO:0003712;transcription cofactor activity;4.54195621632581e-12!GO:0042623;ATPase activity, coupled;5.02856626105103e-12!GO:0008565;protein transporter activity;5.20326610678949e-12!GO:0016604;nuclear body;7.60057775827938e-12!GO:0003743;translation initiation factor activity;1.18415918634998e-11!GO:0006913;nucleocytoplasmic transport;2.42733933096147e-11!GO:0005793;ER-Golgi intermediate compartment;3.28382322197242e-11!GO:0050794;regulation of cellular process;3.43607342513105e-11!GO:0051169;nuclear transport;4.32031219615807e-11!GO:0044453;nuclear membrane part;6.64474281991096e-11!GO:0016607;nuclear speck;7.68353111701929e-11!GO:0006464;protein modification process;1.01531007694167e-10!GO:0015934;large ribosomal subunit;1.12824847499898e-10!GO:0006732;coenzyme metabolic process;1.53115196784551e-10!GO:0008026;ATP-dependent helicase activity;2.40756918557052e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.60032379390706e-10!GO:0000375;RNA splicing, via transesterification reactions;2.60032379390706e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.60032379390706e-10!GO:0006413;translational initiation;2.60032379390706e-10!GO:0015935;small ribosomal subunit;2.92757411227211e-10!GO:0022402;cell cycle process;3.15062635903477e-10!GO:0043687;post-translational protein modification;3.68572247405646e-10!GO:0006281;DNA repair;4.56586142157849e-10!GO:0006461;protein complex assembly;4.63374829073146e-10!GO:0048523;negative regulation of cellular process;9.36843770744849e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.05918822503962e-09!GO:0005746;mitochondrial respiratory chain;1.21020534063489e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71448738815894e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74851793895972e-09!GO:0009719;response to endogenous stimulus;1.75171742410103e-09!GO:0006366;transcription from RNA polymerase II promoter;1.85856829713896e-09!GO:0006446;regulation of translational initiation;2.31815491714626e-09!GO:0008639;small protein conjugating enzyme activity;3.09152664931997e-09!GO:0005643;nuclear pore;3.25101224615565e-09!GO:0004842;ubiquitin-protein ligase activity;4.49037285667151e-09!GO:0019787;small conjugating protein ligase activity;5.40940715289228e-09!GO:0009259;ribonucleotide metabolic process;6.05033142142603e-09!GO:0030120;vesicle coat;6.32304442715134e-09!GO:0030662;coated vesicle membrane;6.32304442715134e-09!GO:0048475;coated membrane;6.62550188327476e-09!GO:0030117;membrane coat;6.62550188327476e-09!GO:0005789;endoplasmic reticulum membrane;6.96734494024838e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.19527159923671e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.43626233545711e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.64778494234754e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.64778494234754e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.64778494234754e-08!GO:0050136;NADH dehydrogenase (quinone) activity;2.01637701933984e-08!GO:0003954;NADH dehydrogenase activity;2.01637701933984e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01637701933984e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.02464109656178e-08!GO:0012501;programmed cell death;2.02862340145519e-08!GO:0042254;ribosome biogenesis and assembly;2.02862340145519e-08!GO:0016564;transcription repressor activity;2.11332284499125e-08!GO:0043038;amino acid activation;2.18348585036402e-08!GO:0006418;tRNA aminoacylation for protein translation;2.18348585036402e-08!GO:0043039;tRNA aminoacylation;2.18348585036402e-08!GO:0005768;endosome;2.5068033736783e-08!GO:0006399;tRNA metabolic process;3.04530513121151e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.37680469343012e-08!GO:0050789;regulation of biological process;3.39192693789392e-08!GO:0006403;RNA localization;3.49314444925783e-08!GO:0009060;aerobic respiration;3.70081712657997e-08!GO:0009055;electron carrier activity;3.71792616903562e-08!GO:0006915;apoptosis;4.2032662991671e-08!GO:0016881;acid-amino acid ligase activity;4.34809593460342e-08!GO:0017038;protein import;4.8248059288145e-08!GO:0003714;transcription corepressor activity;5.03457867586172e-08!GO:0009150;purine ribonucleotide metabolic process;5.09394103006231e-08!GO:0050657;nucleic acid transport;5.63581900264613e-08!GO:0051236;establishment of RNA localization;5.63581900264613e-08!GO:0050658;RNA transport;5.63581900264613e-08!GO:0006163;purine nucleotide metabolic process;5.7142966152353e-08!GO:0048519;negative regulation of biological process;5.9009248005671e-08!GO:0045333;cellular respiration;5.9009248005671e-08!GO:0005788;endoplasmic reticulum lumen;6.57870997033486e-08!GO:0006260;DNA replication;7.15318947774192e-08!GO:0005798;Golgi-associated vesicle;8.05976463065079e-08!GO:0008219;cell death;8.69905775805157e-08!GO:0016265;death;8.69905775805157e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.9638536781363e-08!GO:0046930;pore complex;1.1504277541538e-07!GO:0016787;hydrolase activity;1.2066263602266e-07!GO:0051726;regulation of cell cycle;1.27612530823258e-07!GO:0009260;ribonucleotide biosynthetic process;1.34811296026978e-07!GO:0009056;catabolic process;1.3890620574011e-07!GO:0051276;chromosome organization and biogenesis;1.50717521572177e-07!GO:0008092;cytoskeletal protein binding;1.53930411344038e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59647747929741e-07!GO:0000074;regulation of progression through cell cycle;1.92695801048421e-07!GO:0000278;mitotic cell cycle;2.13588553612172e-07!GO:0065002;intracellular protein transport across a membrane;2.37543486447913e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.7163757418874e-07!GO:0045271;respiratory chain complex I;2.7163757418874e-07!GO:0005747;mitochondrial respiratory chain complex I;2.7163757418874e-07!GO:0031324;negative regulation of cellular metabolic process;2.8581831694974e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.0390556721673e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.0724465059512e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.17768740634008e-07!GO:0006164;purine nucleotide biosynthetic process;3.44950702745645e-07!GO:0006099;tricarboxylic acid cycle;3.52936507565393e-07!GO:0046356;acetyl-CoA catabolic process;3.52936507565393e-07!GO:0042775;organelle ATP synthesis coupled electron transport;3.52936507565393e-07!GO:0042773;ATP synthesis coupled electron transport;3.52936507565393e-07!GO:0051187;cofactor catabolic process;3.75582521922601e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.95910690498969e-07!GO:0015986;ATP synthesis coupled proton transport;4.7990540896615e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.7990540896615e-07!GO:0009109;coenzyme catabolic process;5.5588868739879e-07!GO:0015630;microtubule cytoskeleton;5.8183094302062e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.85041046736447e-07!GO:0006323;DNA packaging;7.16735108850312e-07!GO:0009141;nucleoside triphosphate metabolic process;7.3186622984003e-07!GO:0051170;nuclear import;7.41634920266079e-07!GO:0003724;RNA helicase activity;8.14134396745275e-07!GO:0046034;ATP metabolic process;8.21522409699786e-07!GO:0009892;negative regulation of metabolic process;9.11701067517871e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.11701067517871e-07!GO:0009144;purine nucleoside triphosphate metabolic process;9.11701067517871e-07!GO:0031988;membrane-bound vesicle;9.12827120999568e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.6608484047323e-07!GO:0006084;acetyl-CoA metabolic process;1.03106764842339e-06!GO:0043566;structure-specific DNA binding;1.06030611408419e-06!GO:0019222;regulation of metabolic process;1.11657594275396e-06!GO:0006606;protein import into nucleus;1.13411115150762e-06!GO:0007010;cytoskeleton organization and biogenesis;1.37084364328677e-06!GO:0008361;regulation of cell size;1.47148855437804e-06!GO:0016568;chromatin modification;1.55785678550527e-06!GO:0051028;mRNA transport;1.7029482979883e-06!GO:0044431;Golgi apparatus part;1.7491731597653e-06!GO:0003924;GTPase activity;1.7491731597653e-06!GO:0031252;leading edge;1.84626443604193e-06!GO:0030029;actin filament-based process;1.87250270111843e-06!GO:0000151;ubiquitin ligase complex;2.05258981491337e-06!GO:0005773;vacuole;2.30035952075445e-06!GO:0005761;mitochondrial ribosome;2.61223560745297e-06!GO:0000313;organellar ribosome;2.61223560745297e-06!GO:0016049;cell growth;2.8109719393916e-06!GO:0005813;centrosome;3.34000710096864e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.79565788551893e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.8855465638759e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.8855465638759e-06!GO:0051789;response to protein stimulus;4.33732700594033e-06!GO:0006986;response to unfolded protein;4.33732700594033e-06!GO:0051188;cofactor biosynthetic process;4.38668027161694e-06!GO:0019829;cation-transporting ATPase activity;4.42371767428874e-06!GO:0031982;vesicle;4.47449194397773e-06!GO:0031410;cytoplasmic vesicle;5.04495707488614e-06!GO:0003697;single-stranded DNA binding;5.08904293238179e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.52598243768364e-06!GO:0032446;protein modification by small protein conjugation;5.7252718833603e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.73001933990827e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.08748120943654e-06!GO:0044440;endosomal part;6.33673241466348e-06!GO:0010008;endosome membrane;6.33673241466348e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.69228822389109e-06!GO:0006754;ATP biosynthetic process;7.37100961853654e-06!GO:0006753;nucleoside phosphate metabolic process;7.37100961853654e-06!GO:0016567;protein ubiquitination;8.4286223892836e-06!GO:0005815;microtubule organizing center;8.75128297296329e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.80580216163862e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.80580216163862e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.80580216163862e-06!GO:0006752;group transfer coenzyme metabolic process;9.90454499834288e-06!GO:0005667;transcription factor complex;1.15205137145375e-05!GO:0005770;late endosome;1.87569577698399e-05!GO:0045786;negative regulation of progression through cell cycle;1.88922493466665e-05!GO:0016481;negative regulation of transcription;2.0357876830604e-05!GO:0016491;oxidoreductase activity;2.04626355441273e-05!GO:0019899;enzyme binding;2.04626355441273e-05!GO:0000323;lytic vacuole;2.04626355441273e-05!GO:0005764;lysosome;2.04626355441273e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.04626355441273e-05!GO:0006613;cotranslational protein targeting to membrane;2.50764788738182e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.62031410625486e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.77838651023838e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.18937197867982e-05!GO:0016853;isomerase activity;3.19403811012786e-05!GO:0005694;chromosome;3.21465015050932e-05!GO:0030133;transport vesicle;3.33921645309404e-05!GO:0051246;regulation of protein metabolic process;3.33977788317128e-05!GO:0008186;RNA-dependent ATPase activity;3.47346534635512e-05!GO:0022403;cell cycle phase;3.57248693787915e-05!GO:0003713;transcription coactivator activity;3.92570929262094e-05!GO:0005791;rough endoplasmic reticulum;4.13076377902706e-05!GO:0006793;phosphorus metabolic process;4.15383303847932e-05!GO:0006796;phosphate metabolic process;4.15383303847932e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.33910789644596e-05!GO:0043069;negative regulation of programmed cell death;4.50211599207202e-05!GO:0065007;biological regulation;4.80362809164801e-05!GO:0009117;nucleotide metabolic process;5.03019445006449e-05!GO:0051301;cell division;5.08010626096571e-05!GO:0006364;rRNA processing;5.36751834617152e-05!GO:0016563;transcription activator activity;5.51531885658261e-05!GO:0009108;coenzyme biosynthetic process;5.77862131819039e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.0449807139901e-05!GO:0001558;regulation of cell growth;6.23887279924386e-05!GO:0003779;actin binding;6.53512140480053e-05!GO:0016859;cis-trans isomerase activity;6.5495031741926e-05!GO:0043623;cellular protein complex assembly;7.32497360682047e-05!GO:0005769;early endosome;7.59120751707875e-05!GO:0044262;cellular carbohydrate metabolic process;7.74717567664287e-05!GO:0005905;coated pit;7.77578272151156e-05!GO:0043066;negative regulation of apoptosis;8.16328841507071e-05!GO:0016310;phosphorylation;8.27561145500437e-05!GO:0043067;regulation of programmed cell death;8.90919624930842e-05!GO:0031323;regulation of cellular metabolic process;9.09228483278184e-05!GO:0019867;outer membrane;9.74867612378713e-05!GO:0016740;transferase activity;9.76863813318935e-05!GO:0005839;proteasome core complex (sensu Eukaryota);0.000105592569543861!GO:0016072;rRNA metabolic process;0.000107086757434877!GO:0030663;COPI coated vesicle membrane;0.000107410533784699!GO:0030126;COPI vesicle coat;0.000107410533784699!GO:0004004;ATP-dependent RNA helicase activity;0.000108279714648994!GO:0006891;intra-Golgi vesicle-mediated transport;0.000109276718027555!GO:0042981;regulation of apoptosis;0.00010979637888701!GO:0030867;rough endoplasmic reticulum membrane;0.000115486809101322!GO:0006916;anti-apoptosis;0.000128238875725294!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000134814953052694!GO:0016363;nuclear matrix;0.000134814953052694!GO:0065004;protein-DNA complex assembly;0.000135758618453058!GO:0000087;M phase of mitotic cell cycle;0.000139484653755188!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000140421987155578!GO:0008654;phospholipid biosynthetic process;0.000144389365780442!GO:0007067;mitosis;0.000154257668310666!GO:0031968;organelle outer membrane;0.000164639388515508!GO:0048471;perinuclear region of cytoplasm;0.000183194902124906!GO:0000245;spliceosome assembly;0.000183758644517263!GO:0003690;double-stranded DNA binding;0.00021551802582124!GO:0006612;protein targeting to membrane;0.000224493459914452!GO:0030137;COPI-coated vesicle;0.000228960544391166!GO:0000059;protein import into nucleus, docking;0.00023307782473585!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000245568861508508!GO:0000139;Golgi membrane;0.000249058081408297!GO:0051427;hormone receptor binding;0.000251657786560894!GO:0045259;proton-transporting ATP synthase complex;0.000254092959328427!GO:0005525;GTP binding;0.000283934249425171!GO:0006350;transcription;0.00029607099742721!GO:0006091;generation of precursor metabolites and energy;0.000301980138016468!GO:0033116;ER-Golgi intermediate compartment membrane;0.000311579875860181!GO:0007005;mitochondrion organization and biogenesis;0.000332434996214279!GO:0051168;nuclear export;0.000339576442109596!GO:0030532;small nuclear ribonucleoprotein complex;0.000398058324853138!GO:0005885;Arp2/3 protein complex;0.000401965427165161!GO:0051325;interphase;0.000408333624112906!GO:0007050;cell cycle arrest;0.000414600075118849!GO:0051329;interphase of mitotic cell cycle;0.000434650335614862!GO:0035257;nuclear hormone receptor binding;0.000457261725589858!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000460457501116079!GO:0004576;oligosaccharyl transferase activity;0.000481508211772523!GO:0004177;aminopeptidase activity;0.0005052474842941!GO:0004298;threonine endopeptidase activity;0.000509604766446467!GO:0006333;chromatin assembly or disassembly;0.00054906765677633!GO:0008250;oligosaccharyl transferase complex;0.000568046347576147!GO:0006892;post-Golgi vesicle-mediated transport;0.000592484207492023!GO:0030658;transport vesicle membrane;0.000600083840815598!GO:0044427;chromosomal part;0.00063409531647359!GO:0043021;ribonucleoprotein binding;0.000672176482033785!GO:0005048;signal sequence binding;0.000702023301022212!GO:0016779;nucleotidyltransferase activity;0.000735359774271826!GO:0045045;secretory pathway;0.000778824988731549!GO:0010468;regulation of gene expression;0.000816162581142301!GO:0030127;COPII vesicle coat;0.000895595051075658!GO:0012507;ER to Golgi transport vesicle membrane;0.000895595051075658!GO:0030134;ER to Golgi transport vesicle;0.000928663627090791!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00095723412851634!GO:0005819;spindle;0.00096295258000882!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100814635549882!GO:0003678;DNA helicase activity;0.00100945943864435!GO:0016197;endosome transport;0.00108265703973961!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00111533264226659!GO:0032561;guanyl ribonucleotide binding;0.00124658768296905!GO:0019001;guanyl nucleotide binding;0.00124658768296905!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00126333134168651!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00128319089693548!GO:0015399;primary active transmembrane transporter activity;0.00128319089693548!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00129829009381969!GO:0001726;ruffle;0.0013115704603095!GO:0005741;mitochondrial outer membrane;0.0013174733548678!GO:0045892;negative regulation of transcription, DNA-dependent;0.00138121952716122!GO:0019752;carboxylic acid metabolic process;0.00143267217280747!GO:0015631;tubulin binding;0.00155662310773566!GO:0003729;mRNA binding;0.00157147197965851!GO:0051920;peroxiredoxin activity;0.00157737860058737!GO:0030118;clathrin coat;0.00176210381555387!GO:0006082;organic acid metabolic process;0.00179671577038104!GO:0030521;androgen receptor signaling pathway;0.00198453960495602!GO:0016044;membrane organization and biogenesis;0.00208849555490591!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00211731605128622!GO:0030660;Golgi-associated vesicle membrane;0.00212674215853585!GO:0045454;cell redox homeostasis;0.00218578555995839!GO:0030518;steroid hormone receptor signaling pathway;0.00237260317328245!GO:0007243;protein kinase cascade;0.00239384558998098!GO:0005581;collagen;0.00243167950682416!GO:0044420;extracellular matrix part;0.00265793768297192!GO:0018196;peptidyl-asparagine modification;0.00276320776719902!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00276320776719902!GO:0006261;DNA-dependent DNA replication;0.00283922351595383!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00286155136162668!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00294268073107194!GO:0040008;regulation of growth;0.00307160891112465!GO:0048500;signal recognition particle;0.00314805927254307!GO:0007030;Golgi organization and biogenesis;0.00326447979137227!GO:0065009;regulation of a molecular function;0.00327447550748444!GO:0032774;RNA biosynthetic process;0.00332083888462791!GO:0006402;mRNA catabolic process;0.00334530683954829!GO:0030659;cytoplasmic vesicle membrane;0.00343597219659593!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00347991947702244!GO:0007264;small GTPase mediated signal transduction;0.00355974646567726!GO:0006351;transcription, DNA-dependent;0.00361122364166401!GO:0000279;M phase;0.00364020714661651!GO:0008047;enzyme activator activity;0.00397075893527001!GO:0046483;heterocycle metabolic process;0.00410758752893452!GO:0046914;transition metal ion binding;0.00416585094170708!GO:0030132;clathrin coat of coated pit;0.00463607203344618!GO:0046489;phosphoinositide biosynthetic process;0.00464989789697408!GO:0035258;steroid hormone receptor binding;0.00465639214522749!GO:0008022;protein C-terminus binding;0.00482981716927101!GO:0008270;zinc ion binding;0.00499762480151276!GO:0051052;regulation of DNA metabolic process;0.00504113603975911!GO:0051128;regulation of cellular component organization and biogenesis;0.00524140399654874!GO:0004674;protein serine/threonine kinase activity;0.00529383114052132!GO:0031072;heat shock protein binding;0.00538034706516634!GO:0048487;beta-tubulin binding;0.00554122091246683!GO:0043284;biopolymer biosynthetic process;0.00555546520561825!GO:0030027;lamellipodium;0.00555602572418572!GO:0008094;DNA-dependent ATPase activity;0.00564110398746906!GO:0000785;chromatin;0.00592156451108372!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00608955605627091!GO:0045047;protein targeting to ER;0.00608955605627091!GO:0051252;regulation of RNA metabolic process;0.00619800860499518!GO:0046474;glycerophospholipid biosynthetic process;0.006274036691903!GO:0005595;collagen type XII;0.00643003509002725!GO:0003746;translation elongation factor activity;0.00652979845396918!GO:0006302;double-strand break repair;0.00658602824577729!GO:0044433;cytoplasmic vesicle part;0.00659106646549536!GO:0008139;nuclear localization sequence binding;0.00680597560852926!GO:0051287;NAD binding;0.00683030808559636!GO:0006289;nucleotide-excision repair;0.00687930512552537!GO:0050662;coenzyme binding;0.00691035768375029!GO:0003711;transcription elongation regulator activity;0.00691035768375029!GO:0003684;damaged DNA binding;0.00702087554532046!GO:0000049;tRNA binding;0.00710099651989501!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00710099651989501!GO:0043492;ATPase activity, coupled to movement of substances;0.00730041946113791!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00775704867777054!GO:0005583;fibrillar collagen;0.00781136210106882!GO:0006310;DNA recombination;0.00791461009341128!GO:0044452;nucleolar part;0.00817630532422874!GO:0008610;lipid biosynthetic process;0.00829408258629713!GO:0005874;microtubule;0.00842502642394082!GO:0006414;translational elongation;0.00847539138977275!GO:0048522;positive regulation of cellular process;0.00857091855704756!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00863800336605801!GO:0008180;signalosome;0.00873343219219023!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00891221010675659!GO:0012506;vesicle membrane;0.00891221010675659!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00893625940431994!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00896086222415422!GO:0016126;sterol biosynthetic process;0.00929655510153632!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00989827814960233!GO:0017166;vinculin binding;0.00990769306554374!GO:0045449;regulation of transcription;0.00991712910416281!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00995369256437212!GO:0007040;lysosome organization and biogenesis;0.0100387617199952!GO:0006383;transcription from RNA polymerase III promoter;0.0100461660091731!GO:0016251;general RNA polymerase II transcription factor activity;0.0101886226109089!GO:0006352;transcription initiation;0.0102082895311682!GO:0031901;early endosome membrane;0.01063546650798!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106365355807465!GO:0016408;C-acyltransferase activity;0.0107693623495456!GO:0009165;nucleotide biosynthetic process;0.0110807101672572!GO:0048468;cell development;0.0111307374791941!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0112228832184369!GO:0005856;cytoskeleton;0.0113168574096799!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0114301992032225!GO:0032940;secretion by cell;0.0118759148238012!GO:0045639;positive regulation of myeloid cell differentiation;0.0119795559309856!GO:0000209;protein polyubiquitination;0.0120505496271217!GO:0005869;dynactin complex;0.0126285074467273!GO:0008234;cysteine-type peptidase activity;0.0126780886839558!GO:0007265;Ras protein signal transduction;0.0126872384891996!GO:0006839;mitochondrial transport;0.0128855380650903!GO:0008312;7S RNA binding;0.0128855380650903!GO:0007034;vacuolar transport;0.0128897932018297!GO:0003682;chromatin binding;0.0133768646692039!GO:0031124;mRNA 3'-end processing;0.0137440320905679!GO:0005862;muscle thin filament tropomyosin;0.0138304137723298!GO:0030522;intracellular receptor-mediated signaling pathway;0.0138413103602886!GO:0005096;GTPase activator activity;0.0146142026900981!GO:0009112;nucleobase metabolic process;0.0147036390051119!GO:0006897;endocytosis;0.0147036390051119!GO:0010324;membrane invagination;0.0147036390051119!GO:0015992;proton transport;0.0148099977100174!GO:0031902;late endosome membrane;0.0149446351245336!GO:0005938;cell cortex;0.015100237194449!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.015138278432401!GO:0006635;fatty acid beta-oxidation;0.0151694085102412!GO:0000096;sulfur amino acid metabolic process;0.0151775430070681!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.015276801055728!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.015276801055728!GO:0006818;hydrogen transport;0.015689589004672!GO:0005832;chaperonin-containing T-complex;0.0158389755168798!GO:0005801;cis-Golgi network;0.0158389755168798!GO:0007160;cell-matrix adhesion;0.0159736792729118!GO:0001527;microfibril;0.0159736792729118!GO:0006607;NLS-bearing substrate import into nucleus;0.0159850171590465!GO:0050681;androgen receptor binding;0.0162642677778596!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0170512565260823!GO:0007033;vacuole organization and biogenesis;0.0173881870750993!GO:0051087;chaperone binding;0.0179658540008897!GO:0005774;vacuolar membrane;0.0181327872810002!GO:0000075;cell cycle checkpoint;0.0181814550957999!GO:0030176;integral to endoplasmic reticulum membrane;0.0181814550957999!GO:0008652;amino acid biosynthetic process;0.0182921457629885!GO:0003899;DNA-directed RNA polymerase activity;0.0186261379701566!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0187456625691547!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0187456625691547!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0187456625691547!GO:0033559;unsaturated fatty acid metabolic process;0.0191595055858228!GO:0006636;unsaturated fatty acid biosynthetic process;0.0191595055858228!GO:0051539;4 iron, 4 sulfur cluster binding;0.0192296104081264!GO:0032984;macromolecular complex disassembly;0.0202080134016644!GO:0031589;cell-substrate adhesion;0.0202080134016644!GO:0031418;L-ascorbic acid binding;0.0202258518958564!GO:0007041;lysosomal transport;0.0206242968571656!GO:0006334;nucleosome assembly;0.0206264183411328!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0208335039309417!GO:0006650;glycerophospholipid metabolic process;0.0212997087124231!GO:0050811;GABA receptor binding;0.0216704510897444!GO:0006405;RNA export from nucleus;0.0216704510897444!GO:0000082;G1/S transition of mitotic cell cycle;0.0218478880812366!GO:0031529;ruffle organization and biogenesis;0.0218478880812366!GO:0016790;thiolester hydrolase activity;0.0221113078238968!GO:0030119;AP-type membrane coat adaptor complex;0.0222121429233732!GO:0019843;rRNA binding;0.0224958092835487!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0226031249234019!GO:0043488;regulation of mRNA stability;0.0226707865612378!GO:0043487;regulation of RNA stability;0.0226707865612378!GO:0032200;telomere organization and biogenesis;0.0227899820735417!GO:0000723;telomere maintenance;0.0227899820735417!GO:0046467;membrane lipid biosynthetic process;0.02339514209966!GO:0006497;protein amino acid lipidation;0.02391363410513!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0240141897632724!GO:0031497;chromatin assembly;0.0240141897632724!GO:0006355;regulation of transcription, DNA-dependent;0.0247345600779845!GO:0007006;mitochondrial membrane organization and biogenesis;0.0250343691245397!GO:0048037;cofactor binding;0.0250343691245397!GO:0006509;membrane protein ectodomain proteolysis;0.0250351344637661!GO:0033619;membrane protein proteolysis;0.0250351344637661!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0252570205724534!GO:0030125;clathrin vesicle coat;0.0257719048034557!GO:0030665;clathrin coated vesicle membrane;0.0257719048034557!GO:0005591;collagen type VIII;0.025898081766566!GO:0005598;short-chain collagen;0.025898081766566!GO:0051540;metal cluster binding;0.025898081766566!GO:0051536;iron-sulfur cluster binding;0.025898081766566!GO:0030384;phosphoinositide metabolic process;0.0261703281791691!GO:0031625;ubiquitin protein ligase binding;0.0262245106337672!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.026580323069061!GO:0006007;glucose catabolic process;0.0267538357598731!GO:0006354;RNA elongation;0.0273970718619007!GO:0015629;actin cytoskeleton;0.0277368012174628!GO:0050790;regulation of catalytic activity;0.0277368012174628!GO:0005586;collagen type III;0.027921901632264!GO:0030131;clathrin adaptor complex;0.028045101068619!GO:0000287;magnesium ion binding;0.0282650431676999!GO:0004003;ATP-dependent DNA helicase activity;0.0283828205889756!GO:0005762;mitochondrial large ribosomal subunit;0.0284078293406011!GO:0000315;organellar large ribosomal subunit;0.0284078293406011!GO:0043087;regulation of GTPase activity;0.0284678536686065!GO:0008154;actin polymerization and/or depolymerization;0.0284678536686065!GO:0019798;procollagen-proline dioxygenase activity;0.0288512386283063!GO:0046519;sphingoid metabolic process;0.0288915103670767!GO:0043624;cellular protein complex disassembly;0.0292719611303946!GO:0043241;protein complex disassembly;0.0293534585286665!GO:0048144;fibroblast proliferation;0.0301423729187108!GO:0048145;regulation of fibroblast proliferation;0.0301423729187108!GO:0004527;exonuclease activity;0.0301423729187108!GO:0045792;negative regulation of cell size;0.0311615228586033!GO:0045941;positive regulation of transcription;0.0312617906926375!GO:0043022;ribosome binding;0.0313872590937264!GO:0006378;mRNA polyadenylation;0.0317073765299881!GO:0006376;mRNA splice site selection;0.0317197673619203!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0317197673619203!GO:0006338;chromatin remodeling;0.031823033811657!GO:0019783;small conjugating protein-specific protease activity;0.0321563939066413!GO:0016301;kinase activity;0.032249503298195!GO:0042802;identical protein binding;0.0322904557689748!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0323989013309667!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0326658791498602!GO:0004843;ubiquitin-specific protease activity;0.0327002862627194!GO:0031123;RNA 3'-end processing;0.033339656462261!GO:0003702;RNA polymerase II transcription factor activity;0.033339656462261!GO:0031543;peptidyl-proline dioxygenase activity;0.0335942659603061!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0335942659603061!GO:0000781;chromosome, telomeric region;0.0344225075578169!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0344728783026047!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0344728783026047!GO:0035035;histone acetyltransferase binding;0.0344854310731211!GO:0043495;protein anchor;0.0345697559167505!GO:0048146;positive regulation of fibroblast proliferation;0.0347887032422573!GO:0019318;hexose metabolic process;0.0349418242527031!GO:0033673;negative regulation of kinase activity;0.0349687190404686!GO:0006469;negative regulation of protein kinase activity;0.0349687190404686!GO:0007004;telomere maintenance via telomerase;0.0352840234253079!GO:0008601;protein phosphatase type 2A regulator activity;0.0353380848660489!GO:0008033;tRNA processing;0.0364630563788847!GO:0006401;RNA catabolic process;0.0369869888959567!GO:0051271;negative regulation of cell motility;0.0369911187164461!GO:0006979;response to oxidative stress;0.0369911187164461!GO:0007021;tubulin folding;0.0389547725882091!GO:0000339;RNA cap binding;0.0390507982645832!GO:0042585;germinal vesicle;0.0393372906228262!GO:0044437;vacuolar part;0.0395396661601318!GO:0005996;monosaccharide metabolic process;0.0395436313699433!GO:0006740;NADPH regeneration;0.0396212851578796!GO:0006098;pentose-phosphate shunt;0.0396212851578796!GO:0005083;small GTPase regulator activity;0.0401633592859384!GO:0008320;protein transmembrane transporter activity;0.0404800230992557!GO:0009967;positive regulation of signal transduction;0.0405905520574831!GO:0030308;negative regulation of cell growth;0.0406622330114976!GO:0008147;structural constituent of bone;0.0408523409979839!GO:0051348;negative regulation of transferase activity;0.0409899133642478!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0409899133642478!GO:0003756;protein disulfide isomerase activity;0.0411360833395073!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0411360833395073!GO:0006695;cholesterol biosynthetic process;0.0412352766768048!GO:0006611;protein export from nucleus;0.0413531429180504!GO:0030433;ER-associated protein catabolic process;0.041369585566484!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.041369585566484!GO:0000776;kinetochore;0.0422355684995014!GO:0043433;negative regulation of transcription factor activity;0.0423025546326915!GO:0006984;ER-nuclear signaling pathway;0.0423854928729165!GO:0005099;Ras GTPase activator activity;0.0440182842278669!GO:0001725;stress fiber;0.0441175183774934!GO:0032432;actin filament bundle;0.0441175183774934!GO:0000902;cell morphogenesis;0.044859000530959!GO:0032989;cellular structure morphogenesis;0.044859000530959!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0449221830963805!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0449575789385172!GO:0033043;regulation of organelle organization and biogenesis;0.0449575789385172!GO:0007052;mitotic spindle organization and biogenesis;0.0453534794756919!GO:0004221;ubiquitin thiolesterase activity;0.0453534794756919!GO:0030140;trans-Golgi network transport vesicle;0.0459811896370216!GO:0000314;organellar small ribosomal subunit;0.0461025660880784!GO:0005763;mitochondrial small ribosomal subunit;0.0461025660880784!GO:0005520;insulin-like growth factor binding;0.0464330165622078!GO:0000118;histone deacetylase complex;0.048552376010498!GO:0003923;GPI-anchor transamidase activity;0.0485585269897102!GO:0016255;attachment of GPI anchor to protein;0.0485585269897102!GO:0042765;GPI-anchor transamidase complex;0.0485585269897102!GO:0008484;sulfuric ester hydrolase activity;0.0486868051605747!GO:0005684;U2-dependent spliceosome;0.0491296605810919!GO:0000097;sulfur amino acid biosynthetic process;0.0494637841289505!GO:0008017;microtubule binding;0.0497173734166475!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0499590181394429 | |||
|sample_id=14320 | |sample_id=14320 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=HIF1A:2.65728853995;EVI1:2.20325154425;NKX3-1:2.20197105827;ALX4:2.12238060941;FOXA2:2.03616632584;EN1,2:2.00955979416;GCM1,2:1.95017703335;HBP1_HMGB_SSRP1_UBTF:1.86575403062;ADNP_IRX_SIX_ZHX:1.81692508579;HMGA1,2:1.81267622787;TEAD1:1.79476556309;XBP1:1.78750329886;FOXL1:1.77112968919;NKX2-1,4:1.67196882956;MYBL2:1.67072724872;SRF:1.60993072813;TAL1_TCF{3,4,12}:1.57836270802;NFATC1..3:1.57212902723;GLI1..3:1.45552094964;NR3C1:1.43855179755;GZF1:1.41480624075;HMX1:1.41430737453;ZNF238:1.40442284379;IKZF1:1.37472884864;ATF6:1.31838499531;MAFB:1.28145492229;NKX3-2:1.27234331958;TBX4,5:1.21679554282;MAZ:1.1923821225;SMAD1..7,9:1.15275157092;UFEwm:1.13146330823;HOX{A6,A7,B6,B7}:1.09218869644;STAT1,3:1.06184682667;HES1:1.06060823812;GATA4:1.05098223199;TP53:1.01267858751;MTE{core}:1.00813229219;NFE2L1:1.00640978744;HOX{A4,D4}:0.975171012902;TFAP4:0.954065814063;TLX1..3_NFIC{dimer}:0.953128528515;NFIX:0.92866024987;HOX{A5,B5}:0.913842854251;MEF2{A,B,C,D}:0.913526339308;GFI1B:0.896216134778;MZF1:0.865836045094;PITX1..3:0.850919277988;EBF1:0.849104960242;NANOG{mouse}:0.837434218611;ESR1:0.83613842188;T:0.833175548555;SOX17:0.815334322984;NKX2-2,8:0.807538312725;GTF2I:0.782523468261;GTF2A1,2:0.767147168856;NFE2L2:0.762792685056;RXRA_VDR{dimer}:0.760318112212;PRDM1:0.741274173324;KLF4:0.724418515603;TEF:0.715069520093;SOX5:0.669058839005;HSF1,2:0.597362849478;NR6A1:0.594887833465;FOXP1:0.593055391666;TOPORS:0.582619744417;HLF:0.581964010007;TFAP2B:0.554503464068;ZNF384:0.541614233704;MYB:0.519474779503;PAX2:0.509631302289;RREB1:0.503343453157;ELK1,4_GABP{A,B1}:0.483862268;IKZF2:0.470612640778;TFDP1:0.463819846861;SPZ1:0.440014427396;HIC1:0.439062735215;DBP:0.419396579583;RXR{A,B,G}:0.417581240806;ZNF423:0.408944924707;AHR_ARNT_ARNT2:0.401801230344;FOXO1,3,4:0.397884033944;NHLH1,2:0.376825890271;ZNF148:0.325220412447;PAX5:0.316459460182;EP300:0.314692403737;FOX{I1,J2}:0.31000096877;AR:0.306440021203;XCPE1{core}:0.286482690372;PAX8:0.278112064154;SREBF1,2:0.274246809039;ZBTB16:0.267907158727;PATZ1:0.254195362496;ONECUT1,2:0.24475115045;GFI1:0.244606598642;SOX2:0.243105661039;TBP:0.230586328167;CREB1:0.208555412851;ZNF143:0.207763433135;ARID5B:0.202593059542;FOXN1:0.199012213185;STAT2,4,6:0.191364240684;NRF1:0.181742510205;TFAP2{A,C}:0.17392255704;CEBPA,B_DDIT3:0.168844271855;POU1F1:0.124285781449;TFCP2:0.100858250958;ATF4:0.0839093618093;PAX4:0.0794746280024;TLX2:0.0666099934763;EGR1..3:0.0636040558527;PAX1,9:0.0538626066986;ZIC1..3:0.0502266206944;NFE2:0.0381270921485;ATF5_CREB3:0.0366367166842;AIRE:0.0192976804425;FOX{D1,D2}:0.00584335007567;FOSL2:-0.013281326029;BACH2:-0.0255683569403;YY1:-0.0303134432624;ZFP161:-0.0330349398213;MED-1{core}:-0.0358566896643;HAND1,2:-0.0399538612614;FOS_FOS{B,L1}_JUN{B,D}:-0.0415240806576;BPTF:-0.0566075415379;SP1:-0.0578136097227;MYFfamily:-0.0714770851133;NKX2-3_NKX2-5:-0.0806234982363;LHX3,4:-0.0977554071065;IRF1,2:-0.108324034741;POU6F1:-0.124767392555;OCT4_SOX2{dimer}:-0.129543905332;POU3F1..4:-0.138637863202;RFX1:-0.156916449054;HNF1A:-0.168012536103;NKX6-1,2:-0.18478294262;LEF1_TCF7_TCF7L1,2:-0.191194172151;POU5F1:-0.206554447578;bHLH_family:-0.20657671381;TGIF1:-0.209344471459;DMAP1_NCOR{1,2}_SMARC:-0.23235097007;ELF1,2,4:-0.262477320746;MTF1:-0.263365704651;NR1H4:-0.284837840907;RUNX1..3:-0.292866747612;NFY{A,B,C}:-0.313737045729;E2F1..5:-0.327233277128;SOX{8,9,10}:-0.333002362203;JUN:-0.334588823358;CDC5L:-0.349939845488;ETS1,2:-0.357253377554;NANOG:-0.361608033957;PRRX1,2:-0.366373462496;ZBTB6:-0.385159053806;REST:-0.417098699586;SPI1:-0.431110249473;STAT5{A,B}:-0.436096950918;CUX2:-0.477926010649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520001814837;ATF2:-0.541111376199;CRX:-0.564225662455;HNF4A_NR2F1,2:-0.585675309798;NFKB1_REL_RELA:-0.59976395343;IRF7:-0.599965281493;FOXD3:-0.617850367825;SPIB:-0.619213105398;RFX2..5_RFXANK_RFXAP:-0.623231617436;PPARG:-0.625266937642;FOXP3:-0.734302337544;PDX1:-0.752407057553;GATA6:-0.753598221315;RORA:-0.76319436469;RBPJ:-0.765528934364;BREu{core}:-0.781222013712;PAX3,7:-0.816485657434;ALX1:-0.857645881858;NFIL3:-0.868238851548;SNAI1..3:-0.879743724096;ESRRA:-0.960583823521;CDX1,2,4:-0.967773919855;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01102376995;FOX{F1,F2,J1}:-1.06845651333;ZEB1:-1.08992342898;NR5A1,2:-1.13022609018;LMO2:-1.15438415951;FOXM1:-1.2147658422;PAX6:-1.2716088019;HOXA9_MEIS1:-1.36724137686;FOXQ1:-1.46027661861;VSX1,2:-1.47726062974;PBX1:-1.55828383418;POU2F1..3:-1.60322421784;MYOD1:-1.85996215585 | |top_motifs=HIF1A:2.65728853995;EVI1:2.20325154425;NKX3-1:2.20197105827;ALX4:2.12238060941;FOXA2:2.03616632584;EN1,2:2.00955979416;GCM1,2:1.95017703335;HBP1_HMGB_SSRP1_UBTF:1.86575403062;ADNP_IRX_SIX_ZHX:1.81692508579;HMGA1,2:1.81267622787;TEAD1:1.79476556309;XBP1:1.78750329886;FOXL1:1.77112968919;NKX2-1,4:1.67196882956;MYBL2:1.67072724872;SRF:1.60993072813;TAL1_TCF{3,4,12}:1.57836270802;NFATC1..3:1.57212902723;GLI1..3:1.45552094964;NR3C1:1.43855179755;GZF1:1.41480624075;HMX1:1.41430737453;ZNF238:1.40442284379;IKZF1:1.37472884864;ATF6:1.31838499531;MAFB:1.28145492229;NKX3-2:1.27234331958;TBX4,5:1.21679554282;MAZ:1.1923821225;SMAD1..7,9:1.15275157092;UFEwm:1.13146330823;HOX{A6,A7,B6,B7}:1.09218869644;STAT1,3:1.06184682667;HES1:1.06060823812;GATA4:1.05098223199;TP53:1.01267858751;MTE{core}:1.00813229219;NFE2L1:1.00640978744;HOX{A4,D4}:0.975171012902;TFAP4:0.954065814063;TLX1..3_NFIC{dimer}:0.953128528515;NFIX:0.92866024987;HOX{A5,B5}:0.913842854251;MEF2{A,B,C,D}:0.913526339308;GFI1B:0.896216134778;MZF1:0.865836045094;PITX1..3:0.850919277988;EBF1:0.849104960242;NANOG{mouse}:0.837434218611;ESR1:0.83613842188;T:0.833175548555;SOX17:0.815334322984;NKX2-2,8:0.807538312725;GTF2I:0.782523468261;GTF2A1,2:0.767147168856;NFE2L2:0.762792685056;RXRA_VDR{dimer}:0.760318112212;PRDM1:0.741274173324;KLF4:0.724418515603;TEF:0.715069520093;SOX5:0.669058839005;HSF1,2:0.597362849478;NR6A1:0.594887833465;FOXP1:0.593055391666;TOPORS:0.582619744417;HLF:0.581964010007;TFAP2B:0.554503464068;ZNF384:0.541614233704;MYB:0.519474779503;PAX2:0.509631302289;RREB1:0.503343453157;ELK1,4_GABP{A,B1}:0.483862268;IKZF2:0.470612640778;TFDP1:0.463819846861;SPZ1:0.440014427396;HIC1:0.439062735215;DBP:0.419396579583;RXR{A,B,G}:0.417581240806;ZNF423:0.408944924707;AHR_ARNT_ARNT2:0.401801230344;FOXO1,3,4:0.397884033944;NHLH1,2:0.376825890271;ZNF148:0.325220412447;PAX5:0.316459460182;EP300:0.314692403737;FOX{I1,J2}:0.31000096877;AR:0.306440021203;XCPE1{core}:0.286482690372;PAX8:0.278112064154;SREBF1,2:0.274246809039;ZBTB16:0.267907158727;PATZ1:0.254195362496;ONECUT1,2:0.24475115045;GFI1:0.244606598642;SOX2:0.243105661039;TBP:0.230586328167;CREB1:0.208555412851;ZNF143:0.207763433135;ARID5B:0.202593059542;FOXN1:0.199012213185;STAT2,4,6:0.191364240684;NRF1:0.181742510205;TFAP2{A,C}:0.17392255704;CEBPA,B_DDIT3:0.168844271855;POU1F1:0.124285781449;TFCP2:0.100858250958;ATF4:0.0839093618093;PAX4:0.0794746280024;TLX2:0.0666099934763;EGR1..3:0.0636040558527;PAX1,9:0.0538626066986;ZIC1..3:0.0502266206944;NFE2:0.0381270921485;ATF5_CREB3:0.0366367166842;AIRE:0.0192976804425;FOX{D1,D2}:0.00584335007567;FOSL2:-0.013281326029;BACH2:-0.0255683569403;YY1:-0.0303134432624;ZFP161:-0.0330349398213;MED-1{core}:-0.0358566896643;HAND1,2:-0.0399538612614;FOS_FOS{B,L1}_JUN{B,D}:-0.0415240806576;BPTF:-0.0566075415379;SP1:-0.0578136097227;MYFfamily:-0.0714770851133;NKX2-3_NKX2-5:-0.0806234982363;LHX3,4:-0.0977554071065;IRF1,2:-0.108324034741;POU6F1:-0.124767392555;OCT4_SOX2{dimer}:-0.129543905332;POU3F1..4:-0.138637863202;RFX1:-0.156916449054;HNF1A:-0.168012536103;NKX6-1,2:-0.18478294262;LEF1_TCF7_TCF7L1,2:-0.191194172151;POU5F1:-0.206554447578;bHLH_family:-0.20657671381;TGIF1:-0.209344471459;DMAP1_NCOR{1,2}_SMARC:-0.23235097007;ELF1,2,4:-0.262477320746;MTF1:-0.263365704651;NR1H4:-0.284837840907;RUNX1..3:-0.292866747612;NFY{A,B,C}:-0.313737045729;E2F1..5:-0.327233277128;SOX{8,9,10}:-0.333002362203;JUN:-0.334588823358;CDC5L:-0.349939845488;ETS1,2:-0.357253377554;NANOG:-0.361608033957;PRRX1,2:-0.366373462496;ZBTB6:-0.385159053806;REST:-0.417098699586;SPI1:-0.431110249473;STAT5{A,B}:-0.436096950918;CUX2:-0.477926010649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520001814837;ATF2:-0.541111376199;CRX:-0.564225662455;HNF4A_NR2F1,2:-0.585675309798;NFKB1_REL_RELA:-0.59976395343;IRF7:-0.599965281493;FOXD3:-0.617850367825;SPIB:-0.619213105398;RFX2..5_RFXANK_RFXAP:-0.623231617436;PPARG:-0.625266937642;FOXP3:-0.734302337544;PDX1:-0.752407057553;GATA6:-0.753598221315;RORA:-0.76319436469;RBPJ:-0.765528934364;BREu{core}:-0.781222013712;PAX3,7:-0.816485657434;ALX1:-0.857645881858;NFIL3:-0.868238851548;SNAI1..3:-0.879743724096;ESRRA:-0.960583823521;CDX1,2,4:-0.967773919855;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01102376995;FOX{F1,F2,J1}:-1.06845651333;ZEB1:-1.08992342898;NR5A1,2:-1.13022609018;LMO2:-1.15438415951;FOXM1:-1.2147658422;PAX6:-1.2716088019;HOXA9_MEIS1:-1.36724137686;FOXQ1:-1.46027661861;VSX1,2:-1.47726062974;PBX1:-1.55828383418;POU2F1..3:-1.60322421784;MYOD1:-1.85996215585 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14320-155D9;search_select_hide=table117:FF:14320-155D9 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Preadipocyte - breast, donor2 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12584 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12584
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12584
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.154 |
| 10 | 10 | 0.499 |
| 100 | 100 | 0.373 |
| 101 | 101 | 0.417 |
| 102 | 102 | 0.0145 |
| 103 | 103 | 0.0617 |
| 104 | 104 | 0.466 |
| 105 | 105 | 0.195 |
| 106 | 106 | 0.278 |
| 107 | 107 | 0.73 |
| 108 | 108 | 0.729 |
| 109 | 109 | 0.0747 |
| 11 | 11 | 0.0797 |
| 110 | 110 | 0.386 |
| 111 | 111 | 0.271 |
| 112 | 112 | 0.2 |
| 113 | 113 | 0.897 |
| 114 | 114 | 0.8 |
| 115 | 115 | 0.698 |
| 116 | 116 | 0.629 |
| 117 | 117 | 0.0823 |
| 118 | 118 | 0.0382 |
| 119 | 119 | 0.4 |
| 12 | 12 | 0.6 |
| 120 | 120 | 0.0297 |
| 121 | 121 | 0.9 |
| 122 | 122 | 0.0997 |
| 123 | 123 | 0.223 |
| 124 | 124 | 0.191 |
| 125 | 125 | 0.592 |
| 126 | 126 | 0.0405 |
| 127 | 127 | 0.297 |
| 128 | 128 | 0.318 |
| 129 | 129 | 0.454 |
| 13 | 13 | 0.453 |
| 130 | 130 | 0.775 |
| 131 | 131 | 0.638 |
| 132 | 132 | 0.733 |
| 133 | 133 | 0.214 |
| 134 | 134 | 0.406 |
| 135 | 135 | 0.432 |
| 136 | 136 | 0.561 |
| 137 | 137 | 0.773 |
| 138 | 138 | 0.385 |
| 139 | 139 | 0.414 |
| 14 | 14 | 0.604 |
| 140 | 140 | 0.843 |
| 141 | 141 | 0.676 |
| 142 | 142 | 0.506 |
| 143 | 143 | 0.114 |
| 144 | 144 | 0.861 |
| 145 | 145 | 0.76 |
| 146 | 146 | 0.0987 |
| 147 | 147 | 0.223 |
| 148 | 148 | 0.0775 |
| 149 | 149 | 0.0775 |
| 15 | 15 | 0.175 |
| 150 | 150 | 0.651 |
| 151 | 151 | 0.366 |
| 152 | 152 | 0.501 |
| 153 | 153 | 0.171 |
| 154 | 154 | 0.338 |
| 155 | 155 | 4.55433e-4 |
| 156 | 156 | 0.926 |
| 157 | 157 | 0.238 |
| 158 | 158 | 0.174 |
| 159 | 159 | 0.539 |
| 16 | 16 | 0.822 |
| 160 | 160 | 0.0926 |
| 161 | 161 | 0.138 |
| 162 | 162 | 0.78 |
| 163 | 163 | 0.261 |
| 164 | 164 | 0.976 |
| 165 | 165 | 0.857 |
| 166 | 166 | 0.205 |
| 167 | 167 | 0.697 |
| 168 | 168 | 0.6 |
| 169 | 169 | 0.767 |
| 17 | 17 | 0.978 |
| 18 | 18 | 0.909 |
| 19 | 19 | 0.495 |
| 2 | 2 | 0.619 |
| 20 | 20 | 0.63 |
| 21 | 21 | 0.284 |
| 22 | 22 | 0.519 |
| 23 | 23 | 0.879 |
| 24 | 24 | 0.0396 |
| 25 | 25 | 0.104 |
| 26 | 26 | 0.456 |
| 27 | 27 | 0.213 |
| 28 | 28 | 0.806 |
| 29 | 29 | 0.196 |
| 3 | 3 | 0.542 |
| 30 | 30 | 0.676 |
| 31 | 31 | 0.532 |
| 32 | 32 | 1.05554e-5 |
| 33 | 33 | 0.475 |
| 34 | 34 | 0.66 |
| 35 | 35 | 0.11 |
| 36 | 36 | 0.097 |
| 37 | 37 | 0.764 |
| 38 | 38 | 0.306 |
| 39 | 39 | 0.54 |
| 4 | 4 | 0.445 |
| 40 | 40 | 0.0645 |
| 41 | 41 | 0.343 |
| 42 | 42 | 0.246 |
| 43 | 43 | 0.423 |
| 44 | 44 | 0.302 |
| 45 | 45 | 0.456 |
| 46 | 46 | 0.256 |
| 47 | 47 | 0.0817 |
| 48 | 48 | 0.473 |
| 49 | 49 | 0.166 |
| 5 | 5 | 0.799 |
| 50 | 50 | 0.793 |
| 51 | 51 | 0.291 |
| 52 | 52 | 0.962 |
| 53 | 53 | 0.548 |
| 54 | 54 | 0.674 |
| 55 | 55 | 0.0794 |
| 56 | 56 | 0.263 |
| 57 | 57 | 0.684 |
| 58 | 58 | 0.0639 |
| 59 | 59 | 0.0532 |
| 6 | 6 | 0.179 |
| 60 | 60 | 0.242 |
| 61 | 61 | 0.0573 |
| 62 | 62 | 0.0809 |
| 63 | 63 | 0.725 |
| 64 | 64 | 0.106 |
| 65 | 65 | 0.327 |
| 66 | 66 | 0.407 |
| 67 | 67 | 0.862 |
| 68 | 68 | 0.945 |
| 69 | 69 | 0.439 |
| 7 | 7 | 0.104 |
| 70 | 70 | 0.0773 |
| 71 | 71 | 0.258 |
| 72 | 72 | 0.305 |
| 73 | 73 | 0.777 |
| 74 | 74 | 0.429 |
| 75 | 75 | 0.112 |
| 76 | 76 | 0.574 |
| 77 | 77 | 0.966 |
| 78 | 78 | 0.167 |
| 79 | 79 | 0.0262 |
| 8 | 8 | 0.0375 |
| 80 | 80 | 0.88 |
| 81 | 81 | 0.856 |
| 82 | 82 | 0.401 |
| 83 | 83 | 0.646 |
| 84 | 84 | 0.122 |
| 85 | 85 | 0.6 |
| 86 | 86 | 0.712 |
| 87 | 87 | 0.581 |
| 88 | 88 | 0.763 |
| 89 | 89 | 0.471 |
| 9 | 9 | 0.758 |
| 90 | 90 | 0.887 |
| 91 | 91 | 0.66 |
| 92 | 92 | 0.68 |
| 93 | 93 | 0.538 |
| 94 | 94 | 0.361 |
| 95 | 95 | 0.584 |
| 96 | 96 | 0.708 |
| 97 | 97 | 0.412 |
| 98 | 98 | 0.041 |
| 99 | 99 | 0.388 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12584
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000671 human Preadipocyte - breast, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000139 (human preadipocyte of the breast sample)
0000406 (nuclear fraction sample)
0000671 (human Preadipocyte - breast, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
