FF:11557-120C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005436 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008285;DRR009157;DRZ000582;DRZ001967;DRZ011932;DRZ013317 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000253 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor2.CNhs11354.11557-120C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor2.CNhs11354.11557-120C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor2.CNhs11354.11557-120C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor2.CNhs11354.11557-120C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor2.CNhs11354.11557-120C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11557-120C9 | |id=FF:11557-120C9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000253 | ||
|is_obsolete= | |||
|library_id=CNhs11354 | |||
|library_id_phase_based=2:CNhs11354 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11557 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11557 | |||
|name=Fibroblast - skin dystrophia myotonica, donor2 | |name=Fibroblast - skin dystrophia myotonica, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11354,LSID769,release014,COMPLETED | |profile_hcage=CNhs11354,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0534110330679122,0,-0.191355080835826,-0.282403560576942,0,0,0,0.0834782173702644,0,0,0,0,0,0,0,0,0,0.000145439113847817,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.027426383549743,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0834782173702644,0,0.0116512730292974,0.0834782173702644,-0.0969923612426051,0,0,-0.0138654098428326,0.0834782173702644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417391086851322,0,0,-0.0584468268118252,0.0761142017109455,0.0417391086851322,0.153468449462275,0.0417391086851322,0,-0.0980353512377064,-0.0967380921157628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611179586560705,0,0,0,0,0.128376944243615,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=141.3555 | |rna_weight_ug=141.3555 | ||
|sample_age=50 year old adult | |sample_age=50 year old adult | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.84263028559261e-222!GO:0043226;organelle;1.25626898145258e-176!GO:0043229;intracellular organelle;2.57062013706122e-176!GO:0005737;cytoplasm;1.31258393852869e-175!GO:0043231;intracellular membrane-bound organelle;2.20467577198115e-173!GO:0043227;membrane-bound organelle;4.37397217525076e-173!GO:0044444;cytoplasmic part;5.58054606845079e-128!GO:0044422;organelle part;1.31719165050236e-122!GO:0044446;intracellular organelle part;3.29252710819221e-121!GO:0032991;macromolecular complex;2.28886733564198e-86!GO:0044237;cellular metabolic process;1.42125658429537e-81!GO:0044238;primary metabolic process;2.04478736778309e-81!GO:0030529;ribonucleoprotein complex;2.9114737303782e-79!GO:0043170;macromolecule metabolic process;3.55106480926728e-79!GO:0005515;protein binding;2.41253953155894e-78!GO:0043233;organelle lumen;7.3847671871622e-68!GO:0031974;membrane-enclosed lumen;7.3847671871622e-68!GO:0005634;nucleus;6.65014661824517e-66!GO:0003723;RNA binding;3.88532734030124e-64!GO:0044428;nuclear part;2.52373619955147e-63!GO:0005739;mitochondrion;5.52362479187764e-57!GO:0019538;protein metabolic process;2.15787385643586e-48!GO:0005840;ribosome;4.44578338287109e-48!GO:0016043;cellular component organization and biogenesis;8.94003368984764e-47!GO:0006412;translation;9.5466887238901e-46!GO:0031090;organelle membrane;6.10010437850874e-45!GO:0033036;macromolecule localization;2.2682782676443e-44!GO:0015031;protein transport;2.42356816595974e-44!GO:0006396;RNA processing;2.63361932555261e-44!GO:0044260;cellular macromolecule metabolic process;4.26318379430013e-43!GO:0043234;protein complex;2.03163994891868e-42!GO:0003735;structural constituent of ribosome;2.2187226707398e-42!GO:0044267;cellular protein metabolic process;2.97600796584904e-42!GO:0010467;gene expression;6.11497600438654e-41!GO:0008104;protein localization;6.9149776028154e-41!GO:0045184;establishment of protein localization;8.82726143188551e-41!GO:0043283;biopolymer metabolic process;1.76077601378797e-40!GO:0031981;nuclear lumen;5.99727173366244e-40!GO:0044429;mitochondrial part;3.61130181972357e-38!GO:0005829;cytosol;2.05203053364442e-37!GO:0033279;ribosomal subunit;1.61333406996399e-36!GO:0016071;mRNA metabolic process;2.63436136867631e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.58092895374727e-35!GO:0046907;intracellular transport;1.98945444998991e-35!GO:0009059;macromolecule biosynthetic process;2.47503546689145e-35!GO:0009058;biosynthetic process;3.2335073660296e-35!GO:0044249;cellular biosynthetic process;2.05827375266492e-34!GO:0031967;organelle envelope;2.88748370835126e-33!GO:0031975;envelope;5.03820528889576e-33!GO:0008380;RNA splicing;1.4076090118277e-32!GO:0006397;mRNA processing;3.22945491945657e-31!GO:0006886;intracellular protein transport;2.92274570904475e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.20453832629246e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.4557335318485e-28!GO:0065003;macromolecular complex assembly;5.08217031672803e-27!GO:0006996;organelle organization and biogenesis;1.13236849698976e-26!GO:0043228;non-membrane-bound organelle;6.68338451241627e-26!GO:0043232;intracellular non-membrane-bound organelle;6.68338451241627e-26!GO:0005654;nucleoplasm;5.29733762207403e-25!GO:0022607;cellular component assembly;2.29047702058273e-24!GO:0005740;mitochondrial envelope;6.63541401499289e-24!GO:0005681;spliceosome;8.1114070707984e-23!GO:0031966;mitochondrial membrane;1.42164098172235e-22!GO:0044445;cytosolic part;2.06679550647238e-22!GO:0019866;organelle inner membrane;6.61471834379781e-22!GO:0003676;nucleic acid binding;1.66103663004771e-21!GO:0051649;establishment of cellular localization;1.95926787618341e-21!GO:0051641;cellular localization;3.21536990252069e-21!GO:0005783;endoplasmic reticulum;8.47976613093502e-21!GO:0005743;mitochondrial inner membrane;1.27894345417353e-20!GO:0044451;nucleoplasm part;3.50245808808345e-20!GO:0000166;nucleotide binding;5.64209732604924e-20!GO:0006457;protein folding;8.0199827841414e-20!GO:0006119;oxidative phosphorylation;2.26421742656692e-19!GO:0015935;small ribosomal subunit;2.33208936189395e-19!GO:0012505;endomembrane system;5.46602200713735e-19!GO:0006259;DNA metabolic process;9.38524151480707e-19!GO:0016462;pyrophosphatase activity;9.78193927848473e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.14463162524722e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.88168220434525e-18!GO:0048770;pigment granule;1.89498310290357e-18!GO:0042470;melanosome;1.89498310290357e-18!GO:0017111;nucleoside-triphosphatase activity;1.95587894122903e-18!GO:0016070;RNA metabolic process;3.67341875142867e-18!GO:0015934;large ribosomal subunit;3.88181775504411e-18!GO:0022618;protein-RNA complex assembly;5.35504072672215e-18!GO:0044455;mitochondrial membrane part;3.23001930260973e-17!GO:0031980;mitochondrial lumen;3.52291793881492e-17!GO:0005759;mitochondrial matrix;3.52291793881492e-17!GO:0008134;transcription factor binding;8.7825257621993e-17!GO:0005794;Golgi apparatus;1.5000155117859e-16!GO:0048193;Golgi vesicle transport;2.8599421846422e-16!GO:0016874;ligase activity;3.04173296662102e-16!GO:0044432;endoplasmic reticulum part;3.04173296662102e-16!GO:0008135;translation factor activity, nucleic acid binding;1.00252490873534e-15!GO:0005730;nucleolus;1.27510526502722e-15!GO:0006512;ubiquitin cycle;4.23410863342961e-15!GO:0044265;cellular macromolecule catabolic process;4.76273991224157e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.90193403611917e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.61230873727566e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.47182075507417e-15!GO:0006605;protein targeting;1.51642753183477e-14!GO:0019941;modification-dependent protein catabolic process;1.77733912775704e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.77733912775704e-14!GO:0051082;unfolded protein binding;2.00722417564794e-14!GO:0005746;mitochondrial respiratory chain;2.16178627907509e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.20107393448614e-14!GO:0043285;biopolymer catabolic process;2.62468759340247e-14!GO:0044257;cellular protein catabolic process;2.62468759340247e-14!GO:0032553;ribonucleotide binding;7.73662030257296e-14!GO:0032555;purine ribonucleotide binding;7.73662030257296e-14!GO:0017076;purine nucleotide binding;7.8119053955814e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.2708618014901e-14!GO:0007049;cell cycle;8.73849577838754e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.69299537408614e-13!GO:0051186;cofactor metabolic process;2.07076773051561e-13!GO:0016192;vesicle-mediated transport;3.07268514232608e-13!GO:0009057;macromolecule catabolic process;3.27811654299419e-13!GO:0005761;mitochondrial ribosome;4.91554619279017e-13!GO:0000313;organellar ribosome;4.91554619279017e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.27755716240757e-13!GO:0003954;NADH dehydrogenase activity;7.27755716240757e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.27755716240757e-13!GO:0030163;protein catabolic process;1.31106009191127e-12!GO:0003743;translation initiation factor activity;2.9623006431054e-12!GO:0005793;ER-Golgi intermediate compartment;3.06460894119983e-12!GO:0044248;cellular catabolic process;3.72545221511196e-12!GO:0003712;transcription cofactor activity;7.2392461056731e-12!GO:0006413;translational initiation;1.01206416597258e-11!GO:0006974;response to DNA damage stimulus;1.15700898879301e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.30096660643108e-11!GO:0000375;RNA splicing, via transesterification reactions;1.30096660643108e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.30096660643108e-11!GO:0042254;ribosome biogenesis and assembly;1.68443995851545e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.35976710922161e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.81374197998168e-11!GO:0042773;ATP synthesis coupled electron transport;2.81374197998168e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.76901240374023e-11!GO:0045271;respiratory chain complex I;3.76901240374023e-11!GO:0005747;mitochondrial respiratory chain complex I;3.76901240374023e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.99131102515829e-11!GO:0005524;ATP binding;7.73551612308154e-11!GO:0043412;biopolymer modification;8.75710521996095e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.42168040684471e-11!GO:0032559;adenyl ribonucleotide binding;1.33532114002255e-10!GO:0006732;coenzyme metabolic process;1.56901292018356e-10!GO:0005789;endoplasmic reticulum membrane;1.6100838847161e-10!GO:0030554;adenyl nucleotide binding;1.75915445712268e-10!GO:0009055;electron carrier activity;2.53400466207835e-10!GO:0050794;regulation of cellular process;3.04731133644674e-10!GO:0016604;nuclear body;3.10482146623834e-10!GO:0022402;cell cycle process;3.16251280828095e-10!GO:0006446;regulation of translational initiation;3.49364215579036e-10!GO:0005635;nuclear envelope;4.98130025845839e-10!GO:0006913;nucleocytoplasmic transport;5.53997767002773e-10!GO:0012501;programmed cell death;6.44210755481815e-10!GO:0031965;nuclear membrane;8.70114093984855e-10!GO:0009259;ribonucleotide metabolic process;9.03826280957832e-10!GO:0008565;protein transporter activity;1.12095878512962e-09!GO:0051169;nuclear transport;1.1210516765215e-09!GO:0006915;apoptosis;1.37125822988262e-09!GO:0006464;protein modification process;1.56972096048767e-09!GO:0048523;negative regulation of cellular process;1.90899031271637e-09!GO:0016887;ATPase activity;1.91301382121667e-09!GO:0042623;ATPase activity, coupled;1.91662378844201e-09!GO:0008639;small protein conjugating enzyme activity;2.33973467783738e-09!GO:0008219;cell death;3.09210295870912e-09!GO:0016265;death;3.09210295870912e-09!GO:0006281;DNA repair;3.09210295870912e-09!GO:0006163;purine nucleotide metabolic process;3.88348477452496e-09!GO:0004842;ubiquitin-protein ligase activity;4.28567089036962e-09!GO:0019787;small conjugating protein ligase activity;5.40553189691085e-09!GO:0044453;nuclear membrane part;5.64826667638548e-09!GO:0009150;purine ribonucleotide metabolic process;6.14233377480033e-09!GO:0009260;ribonucleotide biosynthetic process;6.71874059731793e-09!GO:0006366;transcription from RNA polymerase II promoter;6.84378948496364e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.89719834357252e-09!GO:0009719;response to endogenous stimulus;7.55746311138785e-09!GO:0000278;mitotic cell cycle;9.01692001591282e-09!GO:0006164;purine nucleotide biosynthetic process;9.35861471243402e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.1537704723915e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.20133882034016e-08!GO:0004386;helicase activity;1.35996083060008e-08!GO:0016607;nuclear speck;1.35996083060008e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.41050022375911e-08!GO:0005788;endoplasmic reticulum lumen;1.44353144889374e-08!GO:0006461;protein complex assembly;1.46286479873592e-08!GO:0006399;tRNA metabolic process;1.47624181779422e-08!GO:0043687;post-translational protein modification;2.8578780820973e-08!GO:0005768;endosome;3.85677583904722e-08!GO:0048519;negative regulation of biological process;4.67154847659091e-08!GO:0030120;vesicle coat;5.02049864211638e-08!GO:0030662;coated vesicle membrane;5.02049864211638e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.49304527662371e-08!GO:0008026;ATP-dependent helicase activity;5.59996640974782e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.59996640974782e-08!GO:0065002;intracellular protein transport across a membrane;5.68081330891636e-08!GO:0003924;GTPase activity;6.90510831446117e-08!GO:0009060;aerobic respiration;8.32384275068442e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.6803462148418e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.6803462148418e-08!GO:0009141;nucleoside triphosphate metabolic process;8.76688174781023e-08!GO:0045333;cellular respiration;8.99719254364996e-08!GO:0016881;acid-amino acid ligase activity;9.32222992668607e-08!GO:0017038;protein import;9.86514505569978e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.40968326739813e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.40968326739813e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.40968326739813e-07!GO:0005643;nuclear pore;1.45373048618728e-07!GO:0015986;ATP synthesis coupled proton transport;1.81613618127096e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.81613618127096e-07!GO:0043038;amino acid activation;1.97279761946171e-07!GO:0006418;tRNA aminoacylation for protein translation;1.97279761946171e-07!GO:0043039;tRNA aminoacylation;1.97279761946171e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.10889845443467e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.26017761411405e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.26017761411405e-07!GO:0050789;regulation of biological process;2.37475871963794e-07!GO:0006403;RNA localization;2.68194440102744e-07!GO:0000074;regulation of progression through cell cycle;2.73003905217566e-07!GO:0050657;nucleic acid transport;2.73003905217566e-07!GO:0051236;establishment of RNA localization;2.73003905217566e-07!GO:0050658;RNA transport;2.73003905217566e-07!GO:0051246;regulation of protein metabolic process;2.81693468530863e-07!GO:0051726;regulation of cell cycle;2.92470298134757e-07!GO:0048475;coated membrane;3.13108456317164e-07!GO:0030117;membrane coat;3.13108456317164e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.43100651429946e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.43100651429946e-07!GO:0006364;rRNA processing;3.83381617755817e-07!GO:0003714;transcription corepressor activity;4.9785943263038e-07!GO:0046034;ATP metabolic process;5.90774831682502e-07!GO:0044431;Golgi apparatus part;6.28456721214423e-07!GO:0016491;oxidoreductase activity;6.49832893942452e-07!GO:0019829;cation-transporting ATPase activity;6.65416667823586e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.09330996345169e-07!GO:0016072;rRNA metabolic process;7.17441284521097e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;8.24412388999635e-07!GO:0009056;catabolic process;8.46771499542667e-07!GO:0051276;chromosome organization and biogenesis;8.70759161152222e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.04969372342527e-06!GO:0006260;DNA replication;1.12847144773166e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.14547047754527e-06!GO:0006099;tricarboxylic acid cycle;1.23459594867554e-06!GO:0046356;acetyl-CoA catabolic process;1.23459594867554e-06!GO:0046930;pore complex;1.23459594867554e-06!GO:0051187;cofactor catabolic process;1.39945220285617e-06!GO:0003697;single-stranded DNA binding;1.49842394154353e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.75414663368656e-06!GO:0043069;negative regulation of programmed cell death;1.75414663368656e-06!GO:0009109;coenzyme catabolic process;1.92312811160459e-06!GO:0042981;regulation of apoptosis;1.92312811160459e-06!GO:0006323;DNA packaging;1.96606609948335e-06!GO:0043067;regulation of programmed cell death;2.01574632018254e-06!GO:0043566;structure-specific DNA binding;2.0209138965603e-06!GO:0006754;ATP biosynthetic process;2.09533219010329e-06!GO:0006753;nucleoside phosphate metabolic process;2.09533219010329e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.12954170212023e-06!GO:0031252;leading edge;2.42655269912775e-06!GO:0006916;anti-apoptosis;2.6288174700531e-06!GO:0051789;response to protein stimulus;2.97789379012659e-06!GO:0006986;response to unfolded protein;2.97789379012659e-06!GO:0032446;protein modification by small protein conjugation;2.99364739940577e-06!GO:0043066;negative regulation of apoptosis;3.00624298397714e-06!GO:0006084;acetyl-CoA metabolic process;3.12079614910474e-06!GO:0005798;Golgi-associated vesicle;3.32043372334318e-06!GO:0009117;nucleotide metabolic process;3.34182709753398e-06!GO:0051188;cofactor biosynthetic process;3.40921848160645e-06!GO:0016567;protein ubiquitination;3.9883129320706e-06!GO:0008361;regulation of cell size;3.9883129320706e-06!GO:0007005;mitochondrion organization and biogenesis;4.31510679002e-06!GO:0005694;chromosome;4.33307385060941e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.62134676302912e-06!GO:0016049;cell growth;5.34316802999573e-06!GO:0000151;ubiquitin ligase complex;6.32505113476766e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.8242518793772e-06!GO:0004298;threonine endopeptidase activity;8.15575770582971e-06!GO:0005525;GTP binding;9.38155061418733e-06!GO:0006613;cotranslational protein targeting to membrane;9.46080228146499e-06!GO:0005667;transcription factor complex;9.48806818670148e-06!GO:0051028;mRNA transport;9.55691637954832e-06!GO:0044440;endosomal part;9.84968462671236e-06!GO:0010008;endosome membrane;9.84968462671236e-06!GO:0000245;spliceosome assembly;9.99209849532021e-06!GO:0016564;transcription repressor activity;1.10669163286503e-05!GO:0030029;actin filament-based process;1.14993486632211e-05!GO:0015630;microtubule cytoskeleton;1.17989081317797e-05!GO:0031324;negative regulation of cellular metabolic process;1.19977170112573e-05!GO:0045259;proton-transporting ATP synthase complex;1.23851621501018e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.28325436858827e-05!GO:0031988;membrane-bound vesicle;1.30480671668633e-05!GO:0019843;rRNA binding;1.35352593918369e-05!GO:0016787;hydrolase activity;1.52447800244454e-05!GO:0000087;M phase of mitotic cell cycle;1.57067107607512e-05!GO:0051301;cell division;1.62618267694559e-05!GO:0022403;cell cycle phase;1.62618267694559e-05!GO:0051170;nuclear import;1.71741228470121e-05!GO:0001558;regulation of cell growth;1.82140036490542e-05!GO:0006752;group transfer coenzyme metabolic process;1.83677950279586e-05!GO:0003713;transcription coactivator activity;1.83916638968158e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.91090282668473e-05!GO:0003724;RNA helicase activity;1.97870197647685e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.07436989370956e-05!GO:0007067;mitosis;2.11630780854208e-05!GO:0045786;negative regulation of progression through cell cycle;2.12153413484611e-05!GO:0019222;regulation of metabolic process;2.25698957598157e-05!GO:0005813;centrosome;2.3999170319848e-05!GO:0005773;vacuole;2.49494376340859e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.71136753204043e-05!GO:0006606;protein import into nucleus;2.81713257904429e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.1091598733661e-05!GO:0016859;cis-trans isomerase activity;3.14554174296064e-05!GO:0030867;rough endoplasmic reticulum membrane;3.44589066512679e-05!GO:0016853;isomerase activity;3.58455960570351e-05!GO:0016568;chromatin modification;4.18154648697295e-05!GO:0000139;Golgi membrane;4.4318226616958e-05!GO:0031982;vesicle;4.59318805674551e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.68092949762262e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.90055326737173e-05!GO:0044427;chromosomal part;4.92033602263002e-05!GO:0065004;protein-DNA complex assembly;4.94020599758188e-05!GO:0032561;guanyl ribonucleotide binding;5.1049430844747e-05!GO:0019001;guanyl nucleotide binding;5.1049430844747e-05!GO:0031410;cytoplasmic vesicle;5.21109263702617e-05!GO:0005815;microtubule organizing center;5.72202626834658e-05!GO:0030133;transport vesicle;5.85072371326136e-05!GO:0009108;coenzyme biosynthetic process;5.98869686051587e-05!GO:0005769;early endosome;6.46474504786582e-05!GO:0005770;late endosome;7.19840094876445e-05!GO:0005791;rough endoplasmic reticulum;7.22538508250503e-05!GO:0007010;cytoskeleton organization and biogenesis;7.32195092898019e-05!GO:0019899;enzyme binding;7.43921300124337e-05!GO:0006091;generation of precursor metabolites and energy;7.89150938241068e-05!GO:0045454;cell redox homeostasis;7.93739839255144e-05!GO:0016779;nucleotidyltransferase activity;9.69195670112932e-05!GO:0009892;negative regulation of metabolic process;9.69195670112932e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.69195670112932e-05!GO:0043021;ribonucleoprotein binding;0.000105124615903042!GO:0016563;transcription activator activity;0.000111833542591972!GO:0006793;phosphorus metabolic process;0.000116251545558599!GO:0006796;phosphate metabolic process;0.000116251545558599!GO:0043623;cellular protein complex assembly;0.000121331397003827!GO:0005762;mitochondrial large ribosomal subunit;0.000122144561819166!GO:0000315;organellar large ribosomal subunit;0.000122144561819166!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000157280513336528!GO:0008654;phospholipid biosynthetic process;0.000189907640574627!GO:0005905;coated pit;0.000190165018703032!GO:0006612;protein targeting to membrane;0.000212280530256067!GO:0000323;lytic vacuole;0.000216935187266565!GO:0005764;lysosome;0.000216935187266565!GO:0033116;ER-Golgi intermediate compartment membrane;0.000239383108184491!GO:0065007;biological regulation;0.000256270882968188!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000291000475591221!GO:0051168;nuclear export;0.00029396964575263!GO:0030663;COPI coated vesicle membrane;0.000303605995451223!GO:0030126;COPI vesicle coat;0.000303605995451223!GO:0006333;chromatin assembly or disassembly;0.000321254792199483!GO:0000314;organellar small ribosomal subunit;0.000325120049470937!GO:0005763;mitochondrial small ribosomal subunit;0.000325120049470937!GO:0016740;transferase activity;0.000354367097255109!GO:0016310;phosphorylation;0.000371475621428432!GO:0048522;positive regulation of cellular process;0.000385289578605322!GO:0051427;hormone receptor binding;0.000388370620791098!GO:0005885;Arp2/3 protein complex;0.000414115975808826!GO:0005048;signal sequence binding;0.000419716933544708!GO:0008250;oligosaccharyl transferase complex;0.000464670263272732!GO:0016363;nuclear matrix;0.000497450867979874!GO:0006891;intra-Golgi vesicle-mediated transport;0.000565262338235901!GO:0031968;organelle outer membrane;0.000584317197615146!GO:0016481;negative regulation of transcription;0.000597463408652739!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000614092844588438!GO:0008186;RNA-dependent ATPase activity;0.000621421069911901!GO:0008092;cytoskeletal protein binding;0.000622503777324298!GO:0003899;DNA-directed RNA polymerase activity;0.00062710216218217!GO:0004576;oligosaccharyl transferase activity;0.000646219309618511!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000646219309618511!GO:0030137;COPI-coated vesicle;0.00068604430179189!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000697654342443277!GO:0019867;outer membrane;0.000705537587313984!GO:0003729;mRNA binding;0.000717374182649975!GO:0035257;nuclear hormone receptor binding;0.000718347004193008!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000761706168079046!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000826036070041447!GO:0044262;cellular carbohydrate metabolic process;0.000845557073576351!GO:0000279;M phase;0.000949804707533558!GO:0051920;peroxiredoxin activity;0.000956194597539763!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000968509952828438!GO:0000785;chromatin;0.00100550040793383!GO:0051252;regulation of RNA metabolic process;0.00103230430892128!GO:0043681;protein import into mitochondrion;0.00110268802827951!GO:0051329;interphase of mitotic cell cycle;0.00120196187826949!GO:0030027;lamellipodium;0.00123280802411105!GO:0005741;mitochondrial outer membrane;0.00124194402958874!GO:0003690;double-stranded DNA binding;0.00129756542515552!GO:0007243;protein kinase cascade;0.00130705266723515!GO:0016044;membrane organization and biogenesis;0.00134338804454758!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00140552406511079!GO:0040008;regulation of growth;0.00140800456569619!GO:0043284;biopolymer biosynthetic process;0.00143115682952256!GO:0004177;aminopeptidase activity;0.00143787240336708!GO:0006414;translational elongation;0.00154051699416869!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154356863297692!GO:0018196;peptidyl-asparagine modification;0.00157045936805235!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00157045936805235!GO:0006626;protein targeting to mitochondrion;0.00157128667315231!GO:0048500;signal recognition particle;0.00168523904973508!GO:0004004;ATP-dependent RNA helicase activity;0.00171216487741776!GO:0046489;phosphoinositide biosynthetic process;0.00183320441299083!GO:0048471;perinuclear region of cytoplasm;0.0019145325597246!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00198797844105805!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00198797844105805!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00198797844105805!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00198797844105805!GO:0046474;glycerophospholipid biosynthetic process;0.00204582926414453!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00214425621119151!GO:0015399;primary active transmembrane transporter activity;0.00214425621119151!GO:0031323;regulation of cellular metabolic process;0.0022086518165088!GO:0007050;cell cycle arrest;0.00221232900922463!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00223316663898286!GO:0009165;nucleotide biosynthetic process;0.0024368440980247!GO:0030521;androgen receptor signaling pathway;0.00253920048697188!GO:0006892;post-Golgi vesicle-mediated transport;0.00296089033681031!GO:0030880;RNA polymerase complex;0.00314510454025803!GO:0030658;transport vesicle membrane;0.00315902971305882!GO:0051325;interphase;0.00318826993656614!GO:0001726;ruffle;0.00331443196555434!GO:0030132;clathrin coat of coated pit;0.00342718331552872!GO:0031072;heat shock protein binding;0.00354849851680077!GO:0006402;mRNA catabolic process;0.00366390626330987!GO:0008154;actin polymerization and/or depolymerization;0.00366668892781997!GO:0006383;transcription from RNA polymerase III promoter;0.00374709116269482!GO:0030041;actin filament polymerization;0.00391413168366577!GO:0030134;ER to Golgi transport vesicle;0.00395686728050329!GO:0043488;regulation of mRNA stability;0.00410992219438194!GO:0043487;regulation of RNA stability;0.00410992219438194!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00412102852847659!GO:0045047;protein targeting to ER;0.00412102852847659!GO:0003711;transcription elongation regulator activity;0.00426379606614494!GO:0051087;chaperone binding;0.00460756741191833!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00460967893244238!GO:0035258;steroid hormone receptor binding;0.0047592696301596!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00481814542046526!GO:0006839;mitochondrial transport;0.00484874348918648!GO:0046483;heterocycle metabolic process;0.00493759217525277!GO:0000059;protein import into nucleus, docking;0.00506217612037017!GO:0030127;COPII vesicle coat;0.00512261467245427!GO:0012507;ER to Golgi transport vesicle membrane;0.00512261467245427!GO:0007264;small GTPase mediated signal transduction;0.00569844986621456!GO:0000049;tRNA binding;0.00596518485545392!GO:0008312;7S RNA binding;0.00634384478802506!GO:0003746;translation elongation factor activity;0.00640865785831604!GO:0003684;damaged DNA binding;0.00640865785831604!GO:0006740;NADPH regeneration;0.00645005192405268!GO:0006098;pentose-phosphate shunt;0.00645005192405268!GO:0005819;spindle;0.00645005192405268!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00647479263154051!GO:0000428;DNA-directed RNA polymerase complex;0.00647479263154051!GO:0006261;DNA-dependent DNA replication;0.00649075743492809!GO:0051540;metal cluster binding;0.00655367248940782!GO:0051536;iron-sulfur cluster binding;0.00655367248940782!GO:0048487;beta-tubulin binding;0.00658576995956858!GO:0006334;nucleosome assembly;0.00658576995956858!GO:0007006;mitochondrial membrane organization and biogenesis;0.00668021822558184!GO:0006350;transcription;0.00676713231237147!GO:0009112;nucleobase metabolic process;0.00695676675568091!GO:0030833;regulation of actin filament polymerization;0.00706097764076823!GO:0005869;dynactin complex;0.00716620634860292!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00717031988345272!GO:0016197;endosome transport;0.00717033633156606!GO:0017166;vinculin binding;0.00717895613814818!GO:0050681;androgen receptor binding;0.00723788682068636!GO:0051287;NAD binding;0.00727819215449374!GO:0008047;enzyme activator activity;0.00732717963723019!GO:0051128;regulation of cellular component organization and biogenesis;0.00734416870862655!GO:0032984;macromolecular complex disassembly;0.00780070499996687!GO:0006354;RNA elongation;0.00826989730839522!GO:0044452;nucleolar part;0.00829279869241092!GO:0030176;integral to endoplasmic reticulum membrane;0.00848472533914982!GO:0030660;Golgi-associated vesicle membrane;0.00881565869976199!GO:0008033;tRNA processing;0.00898375478633428!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00900646563395353!GO:0006401;RNA catabolic process;0.00915898206926556!GO:0031543;peptidyl-proline dioxygenase activity;0.00984598561389499!GO:0000339;RNA cap binding;0.00984598561389499!GO:0031497;chromatin assembly;0.00986733769357363!GO:0016251;general RNA polymerase II transcription factor activity;0.00986841457427659!GO:0006302;double-strand break repair;0.00996365836532985!GO:0031901;early endosome membrane;0.0103716859552287!GO:0030118;clathrin coat;0.0104559867381837!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0104559867381837!GO:0001527;microfibril;0.0106079777460085!GO:0006509;membrane protein ectodomain proteolysis;0.0108360119356362!GO:0033619;membrane protein proteolysis;0.0108360119356362!GO:0030518;steroid hormone receptor signaling pathway;0.0108526249194339!GO:0008180;signalosome;0.0109043467386572!GO:0042802;identical protein binding;0.0112660209764139!GO:0048518;positive regulation of biological process;0.0113173446695102!GO:0043624;cellular protein complex disassembly;0.0113382868849613!GO:0015631;tubulin binding;0.0115645662222332!GO:0045893;positive regulation of transcription, DNA-dependent;0.0116818184511241!GO:0030384;phosphoinositide metabolic process;0.0117288535990224!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0118693976512006!GO:0033043;regulation of organelle organization and biogenesis;0.0118693976512006!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0118693976512006!GO:0015002;heme-copper terminal oxidase activity;0.0118693976512006!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0118693976512006!GO:0004129;cytochrome-c oxidase activity;0.0118693976512006!GO:0045045;secretory pathway;0.0123714790144809!GO:0031418;L-ascorbic acid binding;0.012408195440839!GO:0010468;regulation of gene expression;0.012414088988749!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0124422186265139!GO:0008139;nuclear localization sequence binding;0.0124422186265139!GO:0009116;nucleoside metabolic process;0.0125934164323207!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0127743860508131!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0127743860508131!GO:0045941;positive regulation of transcription;0.0127964251645458!GO:0006595;polyamine metabolic process;0.0128411978263829!GO:0006352;transcription initiation;0.0129553464013779!GO:0005862;muscle thin filament tropomyosin;0.0130469234839463!GO:0022890;inorganic cation transmembrane transporter activity;0.0130469234839463!GO:0031124;mRNA 3'-end processing;0.0130469234839463!GO:0003678;DNA helicase activity;0.0133196191808118!GO:0043022;ribosome binding;0.0136719228583938!GO:0043241;protein complex disassembly;0.0139218986758159!GO:0050811;GABA receptor binding;0.0140446328452312!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.014186501236875!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.014186501236875!GO:0043492;ATPase activity, coupled to movement of substances;0.0142392500056088!GO:0005657;replication fork;0.0143183234026116!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0147788500964016!GO:0016272;prefoldin complex;0.0148577698262735!GO:0008022;protein C-terminus binding;0.0152124544061688!GO:0006289;nucleotide-excision repair;0.0156286323779121!GO:0005684;U2-dependent spliceosome;0.0156342211516679!GO:0005583;fibrillar collagen;0.0157178517970287!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0157681927322462!GO:0008320;protein transmembrane transporter activity;0.0160169619506371!GO:0001872;zymosan binding;0.0162420554870744!GO:0001878;response to yeast;0.0162420554870744!GO:0006979;response to oxidative stress;0.016570028517641!GO:0048468;cell development;0.0168359535861522!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0168566944772674!GO:0045892;negative regulation of transcription, DNA-dependent;0.0168638469636837!GO:0006405;RNA export from nucleus;0.0168773027036747!GO:0000075;cell cycle checkpoint;0.0168773027036747!GO:0030659;cytoplasmic vesicle membrane;0.0171652341156052!GO:0031625;ubiquitin protein ligase binding;0.0174406302408842!GO:0007051;spindle organization and biogenesis;0.0175042295731727!GO:0006611;protein export from nucleus;0.0178586708811284!GO:0051052;regulation of DNA metabolic process;0.01845629927252!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0188714548407856!GO:0022408;negative regulation of cell-cell adhesion;0.0192145013452735!GO:0006497;protein amino acid lipidation;0.0194195807138395!GO:0019798;procollagen-proline dioxygenase activity;0.0194255884978039!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0194308223975618!GO:0005832;chaperonin-containing T-complex;0.019510371082234!GO:0050662;coenzyme binding;0.0197523204800551!GO:0000082;G1/S transition of mitotic cell cycle;0.0199736364609698!GO:0003779;actin binding;0.0205401299636463!GO:0031529;ruffle organization and biogenesis;0.0205926630354014!GO:0006007;glucose catabolic process;0.020949841259901!GO:0006506;GPI anchor biosynthetic process;0.0210247741073766!GO:0006950;response to stress;0.0210958558636407!GO:0043433;negative regulation of transcription factor activity;0.0212560367668002!GO:0005581;collagen;0.0219708176472291!GO:0008652;amino acid biosynthetic process;0.0220964369591068!GO:0045792;negative regulation of cell size;0.0220964369591068!GO:0008632;apoptotic program;0.0226403585506281!GO:0006650;glycerophospholipid metabolic process;0.0226902182769327!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0227600006603635!GO:0015992;proton transport;0.0232437485619474!GO:0003682;chromatin binding;0.0233310995906108!GO:0065009;regulation of a molecular function;0.0234483621234579!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0235969562531261!GO:0007021;tubulin folding;0.0238958467826124!GO:0019752;carboxylic acid metabolic process;0.0244959416594591!GO:0000209;protein polyubiquitination;0.0250953176961867!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0251555161366501!GO:0035035;histone acetyltransferase binding;0.0252813831650186!GO:0051539;4 iron, 4 sulfur cluster binding;0.025390270236489!GO:0030125;clathrin vesicle coat;0.0255485946226097!GO:0030665;clathrin coated vesicle membrane;0.0255485946226097!GO:0006818;hydrogen transport;0.0257786409555872!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0261299819669287!GO:0006144;purine base metabolic process;0.0267899423507257!GO:0008094;DNA-dependent ATPase activity;0.0273614637031048!GO:0006505;GPI anchor metabolic process;0.0277585040006417!GO:0006082;organic acid metabolic process;0.0278588307536891!GO:0030308;negative regulation of cell growth;0.0285251915993347!GO:0016408;C-acyltransferase activity;0.0300520531072177!GO:0005586;collagen type III;0.0300520531072177!GO:0005874;microtubule;0.0306552251514726!GO:0008168;methyltransferase activity;0.0308382135019945!GO:0009967;positive regulation of signal transduction;0.0324479483294737!GO:0006607;NLS-bearing substrate import into nucleus;0.0326122617417193!GO:0030032;lamellipodium biogenesis;0.0326163231474302!GO:0046467;membrane lipid biosynthetic process;0.0326163231474302!GO:0030865;cortical cytoskeleton organization and biogenesis;0.032866621700264!GO:0006739;NADP metabolic process;0.0328902891821363!GO:0005520;insulin-like growth factor binding;0.0329287989722867!GO:0003756;protein disulfide isomerase activity;0.0331910513063559!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0331910513063559!GO:0047485;protein N-terminus binding;0.0342623863741791!GO:0016741;transferase activity, transferring one-carbon groups;0.034301080502537!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0344908300745636!GO:0006984;ER-nuclear signaling pathway;0.0345257298981527!GO:0001953;negative regulation of cell-matrix adhesion;0.0345476535696185!GO:0004527;exonuclease activity;0.0345476535696185!GO:0006378;mRNA polyadenylation;0.0345731142162772!GO:0044433;cytoplasmic vesicle part;0.0357389627840744!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0359451582613915!GO:0005637;nuclear inner membrane;0.0365742923143586!GO:0030522;intracellular receptor-mediated signaling pathway;0.0366005732946031!GO:0031123;RNA 3'-end processing;0.0366005732946031!GO:0030119;AP-type membrane coat adaptor complex;0.0371566502758021!GO:0004287;prolyl oligopeptidase activity;0.0371566502758021!GO:0043065;positive regulation of apoptosis;0.0375873707697358!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0377034131999922!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0377034131999922!GO:0000096;sulfur amino acid metabolic process;0.0378485188534931!GO:0030508;thiol-disulfide exchange intermediate activity;0.0381939814620356!GO:0003702;RNA polymerase II transcription factor activity;0.0381939814620356!GO:0005669;transcription factor TFIID complex;0.0382340403310517!GO:0004674;protein serine/threonine kinase activity;0.0383087584179884!GO:0022411;cellular component disassembly;0.0391895842889938!GO:0008610;lipid biosynthetic process;0.0394576370289367!GO:0051101;regulation of DNA binding;0.0396296728640169!GO:0001952;regulation of cell-matrix adhesion;0.0396296728640169!GO:0007030;Golgi organization and biogenesis;0.0399070844476788!GO:0000776;kinetochore;0.0401379875464318!GO:0005588;collagen type V;0.0402051993543616!GO:0033673;negative regulation of kinase activity;0.0406602587929677!GO:0006469;negative regulation of protein kinase activity;0.0406602587929677!GO:0006417;regulation of translation;0.0414422273826668!GO:0005096;GTPase activator activity;0.0417013005858283!GO:0030145;manganese ion binding;0.0417013005858283!GO:0008484;sulfuric ester hydrolase activity;0.0417239193349389!GO:0031272;regulation of pseudopodium formation;0.0420853788383702!GO:0031269;pseudopodium formation;0.0420853788383702!GO:0031344;regulation of cell projection organization and biogenesis;0.0420853788383702!GO:0031268;pseudopodium organization and biogenesis;0.0420853788383702!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0420853788383702!GO:0031274;positive regulation of pseudopodium formation;0.0420853788383702!GO:0006310;DNA recombination;0.0421923886754455!GO:0006897;endocytosis;0.0421926061036386!GO:0010324;membrane invagination;0.0421926061036386!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0431721372949597!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0432341167511644!GO:0007034;vacuolar transport;0.0446950753468925!GO:0017134;fibroblast growth factor binding;0.0447132397547501!GO:0005595;collagen type XII;0.0451286936450071!GO:0031371;ubiquitin conjugating enzyme complex;0.0452584548732295!GO:0042158;lipoprotein biosynthetic process;0.0457152188412985!GO:0043068;positive regulation of programmed cell death;0.0461905234369343!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0465399243442175!GO:0051098;regulation of binding;0.0469344082188774!GO:0005801;cis-Golgi network;0.0472881464888435!GO:0007160;cell-matrix adhesion;0.0478814218300654!GO:0032535;regulation of cellular component size;0.0478814218300654!GO:0016126;sterol biosynthetic process;0.0480051628649116!GO:0003923;GPI-anchor transamidase activity;0.0480051628649116!GO:0016255;attachment of GPI anchor to protein;0.0480051628649116!GO:0042765;GPI-anchor transamidase complex;0.0480051628649116!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0480462646745077!GO:0006778;porphyrin metabolic process;0.0482705734207751!GO:0033013;tetrapyrrole metabolic process;0.0482705734207751!GO:0008097;5S rRNA binding;0.048449180992183!GO:0008538;proteasome activator activity;0.0486371407863561!GO:0006376;mRNA splice site selection;0.0497855040195903!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0497855040195903 | |||
|sample_id=11557 | |sample_id=11557 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=NKX2-2,8:2.01040279927;ESR1:1.62568431437;NKX3-2:1.5191748293;MYBL2:1.50747575043;HIF1A:1.45139210157;GZF1:1.44234339541;EVI1:1.43989389346;HMGA1,2:1.41688606046;UFEwm:1.37976755573;ZNF238:1.35635476369;NKX3-1:1.32994566601;KLF4:1.31825373523;HES1:1.23082834498;TAL1_TCF{3,4,12}:1.22939558042;NR3C1:1.20764440669;XBP1:1.20346627226;HOX{A5,B5}:1.1994855598;HBP1_HMGB_SSRP1_UBTF:1.19441187634;SRF:1.14932442852;TEAD1:1.11820372941;HSF1,2:1.07881210353;HAND1,2:1.07579900298;HOX{A4,D4}:1.03037591267;FOXL1:1.01448619935;DBP:0.97540659462;EN1,2:0.964825976746;ALX4:0.891922228493;ATF6:0.855625388987;GFI1B:0.8516463936;TBX4,5:0.837784274829;STAT5{A,B}:0.836317212408;TP53:0.830928548798;PRDM1:0.762953235524;TEF:0.758968920533;PAX1,9:0.755764072887;ZNF384:0.755761211322;AIRE:0.749160901293;MAFB:0.73296883082;NFE2L1:0.71198230907;GATA4:0.684651357926;TFAP4:0.655140541162;SOX17:0.654074152243;GLI1..3:0.65194516147;NKX2-1,4:0.608654951347;NFIX:0.602122895469;TLX1..3_NFIC{dimer}:0.600625473825;CDC5L:0.598766043173;NFATC1..3:0.594251792856;GTF2I:0.565558427806;RXRA_VDR{dimer}:0.547539773806;GCM1,2:0.536688053103;TFAP2{A,C}:0.495323943093;NKX2-3_NKX2-5:0.472228514838;XCPE1{core}:0.46729704867;HLF:0.447049914938;NANOG{mouse}:0.42156659245;MZF1:0.418504704418;MAZ:0.401473151271;RXR{A,B,G}:0.391405101132;PDX1:0.386744817665;NR6A1:0.377162412183;IKZF1:0.363726912265;FOXA2:0.357927373107;GTF2A1,2:0.352357155524;TFCP2:0.336004362366;MTE{core}:0.334152980767;HOX{A6,A7,B6,B7}:0.316711793462;FOXD3:0.316198881121;GFI1:0.28722877307;HMX1:0.281709640436;MYFfamily:0.271820030623;IRF1,2:0.266428481479;ADNP_IRX_SIX_ZHX:0.238641400166;ALX1:0.22904237759;POU5F1:0.224681662796;LHX3,4:0.223456549302;PAX3,7:0.219073977815;EP300:0.216823821292;bHLH_family:0.211624047636;BPTF:0.209809104101;EBF1:0.200093780913;PATZ1:0.1997527959;STAT1,3:0.19402056295;ZBTB6:0.186682647986;TBP:0.181635484487;TFAP2B:0.170051636433;PRRX1,2:0.158113046062;POU3F1..4:0.152874226385;STAT2,4,6:0.14112430076;RREB1:0.138882304917;ZNF423:0.135295913428;NFE2L2:0.12096275977;YY1:0.118431555691;CEBPA,B_DDIT3:0.11532557825;AHR_ARNT_ARNT2:0.106494821654;BACH2:0.0896919161102;TFDP1:0.0685365221796;ZIC1..3:0.0566962687592;FOX{I1,J2}:0.0341169322283;SOX5:0.0299972203365;HIC1:0.0258511279528;FOXO1,3,4:0.0227307543051;NFE2:0.0211308867102;NKX6-1,2:0.0158917945422;FOS_FOS{B,L1}_JUN{B,D}:0.0158159994908;NRF1:0.0155796915298;POU6F1:0.00566648217174;EGR1..3:0.00408467754185;TOPORS:-0.00529351504512;HNF1A:-0.0083845928802;ZBTB16:-0.0224229768065;LEF1_TCF7_TCF7L1,2:-0.0237096858872;ELK1,4_GABP{A,B1}:-0.0481905677468;RUNX1..3:-0.0498341746655;NR1H4:-0.0525442130926;ZFP161:-0.081449708272;SPZ1:-0.0923039990881;ZNF148:-0.110636229157;MEF2{A,B,C,D}:-0.113053596779;MYB:-0.117429495788;CRX:-0.117935427896;SMAD1..7,9:-0.134067927055;PAX5:-0.148565989495;E2F1..5:-0.166601566713;MTF1:-0.169401379907;DMAP1_NCOR{1,2}_SMARC:-0.175616881605;RFX1:-0.195569194857;NHLH1,2:-0.198734673469;PAX8:-0.203006797821;ZNF143:-0.205023316299;MED-1{core}:-0.248850784824;FOX{D1,D2}:-0.277501115861;FOSL2:-0.284671798536;POU1F1:-0.303012043442;REST:-0.313908846274;CDX1,2,4:-0.361685953992;SP1:-0.373200050459;FOXP3:-0.375641225089;NFKB1_REL_RELA:-0.393475078974;ATF5_CREB3:-0.400900921644;HNF4A_NR2F1,2:-0.408362699335;FOXM1:-0.421574290991;JUN:-0.440457198905;CREB1:-0.446615419769;SPI1:-0.45368037478;ELF1,2,4:-0.454843700349;RBPJ:-0.457396306966;TLX2:-0.466536421092;ONECUT1,2:-0.468966867141;TGIF1:-0.48107777883;AR:-0.486801576718;PAX4:-0.487817425803;SOX2:-0.504430732485;BREu{core}:-0.532385412883;ATF2:-0.565648921026;VSX1,2:-0.566546286833;T:-0.583360306478;PAX2:-0.587879231685;IRF7:-0.597267731948;NR5A1,2:-0.597335417541;ARID5B:-0.600007137073;ETS1,2:-0.612266526731;ESRRA:-0.623670327532;NFIL3:-0.626067887235;SREBF1,2:-0.638688716373;SPIB:-0.657452143092;PPARG:-0.671363007496;ATF4:-0.682100041565;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.696303333605;FOXN1:-0.696493152271;PAX6:-0.708048620191;GATA6:-0.742520649021;CUX2:-0.74696863932;OCT4_SOX2{dimer}:-0.792584091307;NFY{A,B,C}:-0.809264797549;SNAI1..3:-0.847036559825;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.862793125122;PBX1:-0.883387215928;FOXP1:-0.892270818063;PITX1..3:-0.895571535119;RORA:-0.901641833661;ZEB1:-0.926893599128;LMO2:-0.934545778648;POU2F1..3:-0.969252389232;RFX2..5_RFXANK_RFXAP:-0.975420502112;FOXQ1:-0.997409028142;IKZF2:-1.0136791229;HOXA9_MEIS1:-1.03097085845;FOX{F1,F2,J1}:-1.03349711562;SOX{8,9,10}:-1.18762099185;NANOG:-1.32215453619;MYOD1:-1.45636975573 | |top_motifs=NKX2-2,8:2.01040279927;ESR1:1.62568431437;NKX3-2:1.5191748293;MYBL2:1.50747575043;HIF1A:1.45139210157;GZF1:1.44234339541;EVI1:1.43989389346;HMGA1,2:1.41688606046;UFEwm:1.37976755573;ZNF238:1.35635476369;NKX3-1:1.32994566601;KLF4:1.31825373523;HES1:1.23082834498;TAL1_TCF{3,4,12}:1.22939558042;NR3C1:1.20764440669;XBP1:1.20346627226;HOX{A5,B5}:1.1994855598;HBP1_HMGB_SSRP1_UBTF:1.19441187634;SRF:1.14932442852;TEAD1:1.11820372941;HSF1,2:1.07881210353;HAND1,2:1.07579900298;HOX{A4,D4}:1.03037591267;FOXL1:1.01448619935;DBP:0.97540659462;EN1,2:0.964825976746;ALX4:0.891922228493;ATF6:0.855625388987;GFI1B:0.8516463936;TBX4,5:0.837784274829;STAT5{A,B}:0.836317212408;TP53:0.830928548798;PRDM1:0.762953235524;TEF:0.758968920533;PAX1,9:0.755764072887;ZNF384:0.755761211322;AIRE:0.749160901293;MAFB:0.73296883082;NFE2L1:0.71198230907;GATA4:0.684651357926;TFAP4:0.655140541162;SOX17:0.654074152243;GLI1..3:0.65194516147;NKX2-1,4:0.608654951347;NFIX:0.602122895469;TLX1..3_NFIC{dimer}:0.600625473825;CDC5L:0.598766043173;NFATC1..3:0.594251792856;GTF2I:0.565558427806;RXRA_VDR{dimer}:0.547539773806;GCM1,2:0.536688053103;TFAP2{A,C}:0.495323943093;NKX2-3_NKX2-5:0.472228514838;XCPE1{core}:0.46729704867;HLF:0.447049914938;NANOG{mouse}:0.42156659245;MZF1:0.418504704418;MAZ:0.401473151271;RXR{A,B,G}:0.391405101132;PDX1:0.386744817665;NR6A1:0.377162412183;IKZF1:0.363726912265;FOXA2:0.357927373107;GTF2A1,2:0.352357155524;TFCP2:0.336004362366;MTE{core}:0.334152980767;HOX{A6,A7,B6,B7}:0.316711793462;FOXD3:0.316198881121;GFI1:0.28722877307;HMX1:0.281709640436;MYFfamily:0.271820030623;IRF1,2:0.266428481479;ADNP_IRX_SIX_ZHX:0.238641400166;ALX1:0.22904237759;POU5F1:0.224681662796;LHX3,4:0.223456549302;PAX3,7:0.219073977815;EP300:0.216823821292;bHLH_family:0.211624047636;BPTF:0.209809104101;EBF1:0.200093780913;PATZ1:0.1997527959;STAT1,3:0.19402056295;ZBTB6:0.186682647986;TBP:0.181635484487;TFAP2B:0.170051636433;PRRX1,2:0.158113046062;POU3F1..4:0.152874226385;STAT2,4,6:0.14112430076;RREB1:0.138882304917;ZNF423:0.135295913428;NFE2L2:0.12096275977;YY1:0.118431555691;CEBPA,B_DDIT3:0.11532557825;AHR_ARNT_ARNT2:0.106494821654;BACH2:0.0896919161102;TFDP1:0.0685365221796;ZIC1..3:0.0566962687592;FOX{I1,J2}:0.0341169322283;SOX5:0.0299972203365;HIC1:0.0258511279528;FOXO1,3,4:0.0227307543051;NFE2:0.0211308867102;NKX6-1,2:0.0158917945422;FOS_FOS{B,L1}_JUN{B,D}:0.0158159994908;NRF1:0.0155796915298;POU6F1:0.00566648217174;EGR1..3:0.00408467754185;TOPORS:-0.00529351504512;HNF1A:-0.0083845928802;ZBTB16:-0.0224229768065;LEF1_TCF7_TCF7L1,2:-0.0237096858872;ELK1,4_GABP{A,B1}:-0.0481905677468;RUNX1..3:-0.0498341746655;NR1H4:-0.0525442130926;ZFP161:-0.081449708272;SPZ1:-0.0923039990881;ZNF148:-0.110636229157;MEF2{A,B,C,D}:-0.113053596779;MYB:-0.117429495788;CRX:-0.117935427896;SMAD1..7,9:-0.134067927055;PAX5:-0.148565989495;E2F1..5:-0.166601566713;MTF1:-0.169401379907;DMAP1_NCOR{1,2}_SMARC:-0.175616881605;RFX1:-0.195569194857;NHLH1,2:-0.198734673469;PAX8:-0.203006797821;ZNF143:-0.205023316299;MED-1{core}:-0.248850784824;FOX{D1,D2}:-0.277501115861;FOSL2:-0.284671798536;POU1F1:-0.303012043442;REST:-0.313908846274;CDX1,2,4:-0.361685953992;SP1:-0.373200050459;FOXP3:-0.375641225089;NFKB1_REL_RELA:-0.393475078974;ATF5_CREB3:-0.400900921644;HNF4A_NR2F1,2:-0.408362699335;FOXM1:-0.421574290991;JUN:-0.440457198905;CREB1:-0.446615419769;SPI1:-0.45368037478;ELF1,2,4:-0.454843700349;RBPJ:-0.457396306966;TLX2:-0.466536421092;ONECUT1,2:-0.468966867141;TGIF1:-0.48107777883;AR:-0.486801576718;PAX4:-0.487817425803;SOX2:-0.504430732485;BREu{core}:-0.532385412883;ATF2:-0.565648921026;VSX1,2:-0.566546286833;T:-0.583360306478;PAX2:-0.587879231685;IRF7:-0.597267731948;NR5A1,2:-0.597335417541;ARID5B:-0.600007137073;ETS1,2:-0.612266526731;ESRRA:-0.623670327532;NFIL3:-0.626067887235;SREBF1,2:-0.638688716373;SPIB:-0.657452143092;PPARG:-0.671363007496;ATF4:-0.682100041565;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.696303333605;FOXN1:-0.696493152271;PAX6:-0.708048620191;GATA6:-0.742520649021;CUX2:-0.74696863932;OCT4_SOX2{dimer}:-0.792584091307;NFY{A,B,C}:-0.809264797549;SNAI1..3:-0.847036559825;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.862793125122;PBX1:-0.883387215928;FOXP1:-0.892270818063;PITX1..3:-0.895571535119;RORA:-0.901641833661;ZEB1:-0.926893599128;LMO2:-0.934545778648;POU2F1..3:-0.969252389232;RFX2..5_RFXANK_RFXAP:-0.975420502112;FOXQ1:-0.997409028142;IKZF2:-1.0136791229;HOXA9_MEIS1:-1.03097085845;FOX{F1,F2,J1}:-1.03349711562;SOX{8,9,10}:-1.18762099185;NANOG:-1.32215453619;MYOD1:-1.45636975573 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11557-120C9;search_select_hide=table117:FF:11557-120C9 | |||
}} | }} | ||
Latest revision as of 18:09, 4 June 2020
| Name: | Fibroblast - skin dystrophia myotonica, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11354 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11354
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11354
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.953 |
| 10 | 10 | 0.65 |
| 100 | 100 | 0.88 |
| 101 | 101 | 0.477 |
| 102 | 102 | 0.0443 |
| 103 | 103 | 0.949 |
| 104 | 104 | 0.787 |
| 105 | 105 | 0.162 |
| 106 | 106 | 0.64 |
| 107 | 107 | 0.67 |
| 108 | 108 | 0.45 |
| 109 | 109 | 0.409 |
| 11 | 11 | 0.675 |
| 110 | 110 | 0.965 |
| 111 | 111 | 0.497 |
| 112 | 112 | 0.553 |
| 113 | 113 | 0.00249 |
| 114 | 114 | 0.478 |
| 115 | 115 | 0.582 |
| 116 | 116 | 0.266 |
| 117 | 117 | 0.28 |
| 118 | 118 | 0.66 |
| 119 | 119 | 0.318 |
| 12 | 12 | 0.375 |
| 120 | 120 | 0.738 |
| 121 | 121 | 0.765 |
| 122 | 122 | 0.0717 |
| 123 | 123 | 4.30511e-4 |
| 124 | 124 | 0.803 |
| 125 | 125 | 0.414 |
| 126 | 126 | 0.898 |
| 127 | 127 | 0.947 |
| 128 | 128 | 0.815 |
| 129 | 129 | 0.378 |
| 13 | 13 | 0.82 |
| 130 | 130 | 0.426 |
| 131 | 131 | 0.97 |
| 132 | 132 | 0.363 |
| 133 | 133 | 0.196 |
| 134 | 134 | 0.273 |
| 135 | 135 | 0.238 |
| 136 | 136 | 0.0796 |
| 137 | 137 | 0.159 |
| 138 | 138 | 0.827 |
| 139 | 139 | 0.917 |
| 14 | 14 | 0.196 |
| 140 | 140 | 0.347 |
| 141 | 141 | 0.187 |
| 142 | 142 | 0.858 |
| 143 | 143 | 0.966 |
| 144 | 144 | 0.331 |
| 145 | 145 | 0.558 |
| 146 | 146 | 0.688 |
| 147 | 147 | 0.0737 |
| 148 | 148 | 0.401 |
| 149 | 149 | 0.0186 |
| 15 | 15 | 0.615 |
| 150 | 150 | 0.382 |
| 151 | 151 | 0.841 |
| 152 | 152 | 0.732 |
| 153 | 153 | 0.247 |
| 154 | 154 | 0.583 |
| 155 | 155 | 0.0528 |
| 156 | 156 | 0.653 |
| 157 | 157 | 0.658 |
| 158 | 158 | 0.00715 |
| 159 | 159 | 0.844 |
| 16 | 16 | 0.0333 |
| 160 | 160 | 0.263 |
| 161 | 161 | 0.196 |
| 162 | 162 | 0.534 |
| 163 | 163 | 0.677 |
| 164 | 164 | 0.469 |
| 165 | 165 | 0.501 |
| 166 | 166 | 0.148 |
| 167 | 167 | 0.686 |
| 168 | 168 | 0.865 |
| 169 | 169 | 0.0532 |
| 17 | 17 | 0.55 |
| 18 | 18 | 0.046 |
| 19 | 19 | 0.00764 |
| 2 | 2 | 0.541 |
| 20 | 20 | 0.363 |
| 21 | 21 | 0.0225 |
| 22 | 22 | 0.282 |
| 23 | 23 | 0.164 |
| 24 | 24 | 0.308 |
| 25 | 25 | 0.356 |
| 26 | 26 | 0.836 |
| 27 | 27 | 0.836 |
| 28 | 28 | 0.298 |
| 29 | 29 | 0.849 |
| 3 | 3 | 0.572 |
| 30 | 30 | 0.211 |
| 31 | 31 | 0.657 |
| 32 | 32 | 9.06456e-14 |
| 33 | 33 | 0.543 |
| 34 | 34 | 0.773 |
| 35 | 35 | 0.967 |
| 36 | 36 | 0.122 |
| 37 | 37 | 0.146 |
| 38 | 38 | 0.271 |
| 39 | 39 | 0.354 |
| 4 | 4 | 0.541 |
| 40 | 40 | 0.123 |
| 41 | 41 | 0.686 |
| 42 | 42 | 0.642 |
| 43 | 43 | 0.987 |
| 44 | 44 | 0.502 |
| 45 | 45 | 0.396 |
| 46 | 46 | 0.772 |
| 47 | 47 | 0.422 |
| 48 | 48 | 0.425 |
| 49 | 49 | 0.774 |
| 5 | 5 | 0.506 |
| 50 | 50 | 0.549 |
| 51 | 51 | 0.711 |
| 52 | 52 | 0.838 |
| 53 | 53 | 0.112 |
| 54 | 54 | 0.723 |
| 55 | 55 | 0.175 |
| 56 | 56 | 0.921 |
| 57 | 57 | 0.959 |
| 58 | 58 | 0.192 |
| 59 | 59 | 0.307 |
| 6 | 6 | 0.947 |
| 60 | 60 | 0.493 |
| 61 | 61 | 0.579 |
| 62 | 62 | 0.967 |
| 63 | 63 | 0.583 |
| 64 | 64 | 0.381 |
| 65 | 65 | 0.937 |
| 66 | 66 | 0.289 |
| 67 | 67 | 0.694 |
| 68 | 68 | 0.993 |
| 69 | 69 | 0.962 |
| 7 | 7 | 0.217 |
| 70 | 70 | 0.746 |
| 71 | 71 | 0.331 |
| 72 | 72 | 0.966 |
| 73 | 73 | 0.431 |
| 74 | 74 | 0.0727 |
| 75 | 75 | 0.929 |
| 76 | 76 | 0.688 |
| 77 | 77 | 0.154 |
| 78 | 78 | 0.262 |
| 79 | 79 | 0.0516 |
| 8 | 8 | 0.56 |
| 80 | 80 | 0.497 |
| 81 | 81 | 0.891 |
| 82 | 82 | 0.704 |
| 83 | 83 | 0.314 |
| 84 | 84 | 0.28 |
| 85 | 85 | 0.742 |
| 86 | 86 | 0.691 |
| 87 | 87 | 0.971 |
| 88 | 88 | 0.591 |
| 89 | 89 | 0.0883 |
| 9 | 9 | 0.866 |
| 90 | 90 | 0.778 |
| 91 | 91 | 0.984 |
| 92 | 92 | 0.153 |
| 93 | 93 | 0.737 |
| 94 | 94 | 0.209 |
| 95 | 95 | 0.747 |
| 96 | 96 | 0.927 |
| 97 | 97 | 0.703 |
| 98 | 98 | 0.148 |
| 99 | 99 | 0.0106 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11354
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000253 human fibroblast- skin dystrophia myotonica sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
