FF:11675-122H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005025 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008432;DRR009304;DRZ000729;DRZ002114;DRZ012079;DRZ013464 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11675-122H1 | |id=FF:11675-122H1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |||
|library_id=CNhs12624 | |||
|library_id_phase_based=2:CNhs12624 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11675 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11675 | |||
|name=Renal Glomerular Endothelial Cells, donor3 | |name=Renal Glomerular Endothelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12624,LSID952,release012,COMPLETED | |profile_hcage=CNhs12624,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0424517716643038,0,0,0,0,0.0565726967506213,0,-0.121998615390869,0.287813135193489,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207553434739623,0,0,0,0,0,0.301959967235837,0,0,0.39532684819346,0,0,0,0,0,0,0,0,0,0,0.360876445088051,0,0.0317358236559967,0.0849035433286077,0,0,0,0,0,0,0,0.0182367505514695,0,0,0,0.360876445088051,0,0.0497023806093188,0,-0.0120888179139974,0,0,-0.0124400838844893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849035433286077,0,0,0,-0.118333018766116,0,0,0,0,0,0,0.111286168796525,0,0,0,0.0927135174454858,0.0910680501256155,0.0424517716643038,0.216890726837007,0,0,-0.0131318079090987,0.0959358771671475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0184275872530467,0.0849035433286077,0,0,-0.0165499880252562,-0.115361386604466,0,0,0.0519741965789709,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0131318079090987,0,0,0,0,0,0,0,0,0.216890726837007,0,0,0.0231886626298471,0,0.317041516495469,-0.0586115991948642,0,0,0.0663936546959363,0,0.155892013338829,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0182109544246487,-0.2205686875698,0,0.060155016818533,-0.0683442610773682,0,0,0,0,0.025573969483019,0,-0.120879483793741,0.0731718450154113,0.214125676193051,-0.19162203302193,-0.055712496781182,0,0,0,0.000798843039430452,-0.183975395220242,0,0,0.180485601069611,-0.181349618560659,0,0,1.06259968343637,0,-0.00323352346573569,0.0757134105007785,0,0.152240633046428,0,0,0,0,0,0,0,0,0.0849035433286077,0,0,-0.0574934668214365,-0.17109658334014,0.0120417908267253,0,0.0849035433286077,0,-0.0508999383571296,0.0104394771985276,0,0.369771380883228,0.0598956786859053,-0.0585477786849468,0.105846287279445,0,0.366980211776481,0.0590423565078574,0.431436754498061,-0.135015771896905,0.122965688544273,-0.0340897062110188,0,0.14006523047506,-0.0432150922742173,0.0153404457957132,0.0792481981879019,0.0151095156866492,-0.10732158858664,-0.0535338613991674,0,0,0,0.0105442713476482,0,0,0.00945679209063055,-0.077834123856553,0.0893949322327185,0.0461883224956071,0.0072630260427119,0.346327300824943,0.00291924320763329,-0.240545726059587,0.0287179170167878,0.030709385212272,0,0.0849035433286077,0,0.028076085135451,0.0751179167593968,0.0114104760841416,0,0.0443059761613416,-0.0683442610773682,0.0849035433286077,0.142747896690607,0.0230783689202276,0,0,0.0484594183914088,0,0,0,0,0,0.026698706237736,-0.383600129691338,-0.232855561555545,0,0.0174444991604475,0.0373669123773443,0.163326654807285,0,-0.239413767755157,0.00589793221235324,-0.0277066144458809,0.0253417398283833,0,0.138398262238498,-0.0478478274881721,-0.115156847945736,0.182136100251231,-0.0584468268118252,0.0125856030640633,0.082747083497152,0.18758046738406,0.194985619134659,-0.0164610712040311,0.311791031028607,0.00672870104804194,0.0804698331938267,-0.462607404784517,-0.0532189889819668,0.326829295864197,0,-0.0478719333071786,0,-0.199591459145996,0,0.122997283989966,0.235254307111837,-0.354385831252079,-0.0369783450316308,0,-0.0385523727458792,0.77309224888132,0.0568740675963186,0.00159363495987352,0.010833312724864,0,0.16760846108998,-0.198124459945178,-0.211650427864589,0.301843713984168,0,-0.162843509126836,0,0,-0.0851009775510428,0.20026122653147,0.0849035433286077,-0.0258003687284101,-0.173465649917538,-0.286240496770675,0.0399209399038945,0.216890726837007,0,-0.375332800077313,0,0,0.200109241528147,0,0.344231259753573,0.0646492029378635,0.0165397098483758,0.263964272950409,0,0,-0.177527765965176,0,-0.093269559357689,0,0,0.0929771447877226,0.100262613846875,0,0,0.216890726837007,0.0391473874102785,0,-0.0589565109853561,0,0,0,0,0,-0.0175475492727741,0.0809039340794103,0,0.0728172216107159,0,0.0849035433286077,0,0.399917863503894,0,0,0,0.0849035433286077,0.267816445021845,0.0587526833203674,0.0328745976624083,0.0424517716643038,0,0,0,-0.0598313892146461,-0.118333018766116,0.0849035433286077,0.0240293068411969,0,0,0,0,-0.0861409897892114,0,0,0,0,0.411095698882422,0.374892882033088,0,0,0,0.191871754334295,0,0,0,0,0.138981369061345,0,0,0.277905235081227,0,0.00743328508665075,-0.0815818795468414,0,-0.046636034173621,0.127835391606329,0.492466860518776,0,0,-0.17644358846128,0,0.00806805636034925,0.0277597331111095,0,0,0,0,0,0,0,0,0,0.00257621443725173,0,0,0,0,0,0.499571506567404,0,0,0,0,0,-0.25571353387665,0.124666670178497,0,0,0,0,0,0,0,0.153529517543107,-0.0207800120329592,0,0,0,0,0,0,0,0,0.0568574983090802,0,0,0,0,0,-0.0120888179139974,0,0,0,0.0849035433286077,0.49072272705837,0,0,-0.192458588864906,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0325729273033808,-0.121998615390869,0,0,0,0,0,0,0,0.329697607436878,0,0.0849035433286077,0,0,-0.0289808303803695,0,0,0,0.112094342047851,0,0.0565726967506213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271512819043392,0,0,0.014406309324319,0,0,0.057657775916045,0,0,0,0,0,0,0.0771049393899765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849035433286077,0,0,0,0,0,0.0424517716643038,-0.0406613637405925,0,0,0,0,0,0,0,0.301959967235837,0.360876445088051,0.0424517716643038,-0.0140868031311119,0,0,0,0,0.140139215290901,0,0.149472381122481,0.344874214923227,0.0780185357068051,0,0,0,0.0305179708461527,0.360876445088051,0,0.0536941660590519,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.0849035433286077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207553434739623,0,0,0,0,0,0,0,0,0,0,0,0,0.0424517716643038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0424517716643038,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190349069646773,0,0,0,0.00380449717996367,0,0,0,0,0,0,0.0849035433286077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849035433286077,0,0,0,0.0849035433286077,0,0,0,-0.0445524218623441,0,0,0,0,0,0,0,0,0.360876445088051,0,0,0,0,-0.0482220752390542,0,0.000526911098580565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0983099989442289,0,0,0,0,0.169253616176089,0,0,0,0,0,0,0.0849035433286077,0,0,0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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC4005 | |rna_catalog_number=SC4005 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.20505760922984e-252!GO:0043226;organelle;9.3950898410199e-201!GO:0043229;intracellular organelle;1.74731209057006e-200!GO:0005737;cytoplasm;4.84692637967108e-196!GO:0043231;intracellular membrane-bound organelle;3.56335568048725e-192!GO:0043227;membrane-bound organelle;8.48896094862507e-192!GO:0044422;organelle part;3.28622233114287e-153!GO:0044446;intracellular organelle part;8.11444637635042e-152!GO:0044444;cytoplasmic part;3.37517870584511e-134!GO:0032991;macromolecular complex;4.03861881027103e-108!GO:0005515;protein binding;2.40492455175018e-97!GO:0030529;ribonucleoprotein complex;9.42762232678209e-92!GO:0044238;primary metabolic process;8.82885823053177e-87!GO:0044237;cellular metabolic process;8.95656291237785e-86!GO:0043170;macromolecule metabolic process;7.21064612398396e-83!GO:0005634;nucleus;1.31775561406132e-78!GO:0044428;nuclear part;1.13748855223547e-74!GO:0003723;RNA binding;1.24449609296291e-74!GO:0043233;organelle lumen;1.16438086179975e-72!GO:0031974;membrane-enclosed lumen;1.16438086179975e-72!GO:0005739;mitochondrion;1.11804395381069e-66!GO:0016043;cellular component organization and biogenesis;2.68546884061151e-59!GO:0019538;protein metabolic process;3.87959748865323e-57!GO:0005840;ribosome;8.0041792746173e-56!GO:0043234;protein complex;5.00811634820967e-55!GO:0006412;translation;3.31036115631862e-51!GO:0044267;cellular protein metabolic process;4.79053467817569e-50!GO:0044260;cellular macromolecule metabolic process;7.69706573188383e-50!GO:0031090;organelle membrane;3.20987281454265e-49!GO:0006396;RNA processing;9.28120812906221e-49!GO:0003735;structural constituent of ribosome;2.84602540534397e-48!GO:0043283;biopolymer metabolic process;6.38178435089863e-46!GO:0043228;non-membrane-bound organelle;1.46671653705423e-45!GO:0043232;intracellular non-membrane-bound organelle;1.46671653705423e-45!GO:0044429;mitochondrial part;2.30777847173758e-44!GO:0031981;nuclear lumen;2.18584536687108e-43!GO:0015031;protein transport;2.3926228040644e-42!GO:0033279;ribosomal subunit;3.15983490079778e-42!GO:0031967;organelle envelope;4.22130701067141e-42!GO:0033036;macromolecule localization;4.31313256479555e-42!GO:0031975;envelope;1.1051858836035e-41!GO:0006996;organelle organization and biogenesis;1.16813704542285e-41!GO:0005829;cytosol;5.15694928587749e-40!GO:0009058;biosynthetic process;1.43613385424298e-39!GO:0044249;cellular biosynthetic process;1.59216001284525e-39!GO:0045184;establishment of protein localization;6.15893972169864e-39!GO:0008104;protein localization;1.12263068194088e-38!GO:0009059;macromolecule biosynthetic process;3.36620085143748e-38!GO:0016071;mRNA metabolic process;9.66789365431416e-38!GO:0010467;gene expression;1.88119108970112e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.19354550606774e-37!GO:0065003;macromolecular complex assembly;4.66594190573716e-37!GO:0046907;intracellular transport;6.80982337521432e-37!GO:0008380;RNA splicing;1.80682573596053e-36!GO:0022607;cellular component assembly;6.53502183930447e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.16339550260686e-33!GO:0006397;mRNA processing;4.29072853323549e-33!GO:0007049;cell cycle;2.53112017271242e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.84414495780651e-30!GO:0006259;DNA metabolic process;4.19686284697362e-30!GO:0006886;intracellular protein transport;5.23705635406035e-30!GO:0005740;mitochondrial envelope;8.68219518123209e-29!GO:0000166;nucleotide binding;1.42305116903379e-28!GO:0031966;mitochondrial membrane;5.0372639885339e-27!GO:0019866;organelle inner membrane;9.43691492564976e-27!GO:0005681;spliceosome;2.96086786346341e-26!GO:0051649;establishment of cellular localization;8.1751622468067e-26!GO:0005654;nucleoplasm;1.26098887280326e-25!GO:0051641;cellular localization;1.66239480529951e-25!GO:0005743;mitochondrial inner membrane;2.04612515215348e-24!GO:0044445;cytosolic part;6.72827306261519e-24!GO:0022402;cell cycle process;2.4482497167191e-23!GO:0016462;pyrophosphatase activity;3.11942400157337e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.86121936028261e-23!GO:0000278;mitotic cell cycle;7.96802874018502e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;8.96733679173895e-23!GO:0017111;nucleoside-triphosphatase activity;1.58753244724755e-22!GO:0015935;small ribosomal subunit;7.86400573043192e-22!GO:0032553;ribonucleotide binding;1.14080831318013e-21!GO:0032555;purine ribonucleotide binding;1.14080831318013e-21!GO:0006119;oxidative phosphorylation;1.2321892950704e-21!GO:0015934;large ribosomal subunit;1.69592394671496e-21!GO:0012505;endomembrane system;4.92659947263937e-21!GO:0006457;protein folding;8.33787786743055e-21!GO:0044451;nucleoplasm part;1.19520002025654e-20!GO:0017076;purine nucleotide binding;1.41617095402398e-20!GO:0003676;nucleic acid binding;3.14302096832325e-20!GO:0044455;mitochondrial membrane part;5.694469790868e-20!GO:0022618;protein-RNA complex assembly;2.14929987555739e-19!GO:0031980;mitochondrial lumen;3.04353304362392e-19!GO:0005759;mitochondrial matrix;3.04353304362392e-19!GO:0005694;chromosome;6.1161405338648e-19!GO:0005730;nucleolus;2.85007501743001e-18!GO:0048770;pigment granule;8.73901926096713e-18!GO:0042470;melanosome;8.73901926096713e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.66026145296495e-17!GO:0044427;chromosomal part;1.78474481762056e-17!GO:0000087;M phase of mitotic cell cycle;2.43134124965682e-17!GO:0022403;cell cycle phase;2.48540275589527e-17!GO:0005783;endoplasmic reticulum;3.79650827974803e-17!GO:0007067;mitosis;4.024455421378e-17!GO:0016874;ligase activity;5.42604674630417e-17!GO:0005524;ATP binding;5.62318296111927e-17!GO:0005746;mitochondrial respiratory chain;6.08926055750684e-17!GO:0044265;cellular macromolecule catabolic process;6.35050315203074e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.34896258338892e-17!GO:0032559;adenyl ribonucleotide binding;9.30351584101526e-17!GO:0043412;biopolymer modification;1.24778817614768e-16!GO:0051301;cell division;1.34454218827175e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.37605934943175e-16!GO:0005794;Golgi apparatus;1.39273661373721e-16!GO:0019941;modification-dependent protein catabolic process;1.42080549919041e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.42080549919041e-16!GO:0043285;biopolymer catabolic process;1.96708302304992e-16!GO:0044257;cellular protein catabolic process;2.2879117735287e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.43767786061137e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.40223431532705e-16!GO:0006512;ubiquitin cycle;5.64122972338406e-16!GO:0008134;transcription factor binding;6.68389278223371e-16!GO:0005761;mitochondrial ribosome;7.10610744756472e-16!GO:0000313;organellar ribosome;7.10610744756472e-16!GO:0006974;response to DNA damage stimulus;1.13733182412562e-15!GO:0030554;adenyl nucleotide binding;1.38589281624816e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.8511346941146e-15!GO:0003954;NADH dehydrogenase activity;1.8511346941146e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.8511346941146e-15!GO:0006464;protein modification process;3.42701408339316e-15!GO:0009057;macromolecule catabolic process;3.6770652914428e-15!GO:0030163;protein catabolic process;4.30187237723168e-15!GO:0016192;vesicle-mediated transport;4.86748074154864e-15!GO:0051276;chromosome organization and biogenesis;8.3961676553076e-15!GO:0008135;translation factor activity, nucleic acid binding;1.3001843380021e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.43376081490007e-14!GO:0042254;ribosome biogenesis and assembly;1.58218999308891e-14!GO:0051186;cofactor metabolic process;1.6289999936389e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.85469847375711e-14!GO:0000375;RNA splicing, via transesterification reactions;1.85469847375711e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.85469847375711e-14!GO:0006605;protein targeting;2.33386326584319e-14!GO:0016070;RNA metabolic process;3.48859300519156e-14!GO:0000279;M phase;5.47079394373289e-14!GO:0044432;endoplasmic reticulum part;8.88299386590468e-14!GO:0005635;nuclear envelope;8.88299386590468e-14!GO:0051082;unfolded protein binding;1.07605503758207e-13!GO:0043687;post-translational protein modification;1.07804670187016e-13!GO:0044453;nuclear membrane part;1.66121078404949e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.79678436574392e-13!GO:0042773;ATP synthesis coupled electron transport;1.79678436574392e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.93798005678533e-13!GO:0045271;respiratory chain complex I;1.93798005678533e-13!GO:0005747;mitochondrial respiratory chain complex I;1.93798005678533e-13!GO:0044248;cellular catabolic process;2.40839152759589e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.27118967773127e-13!GO:0012501;programmed cell death;4.09299343055491e-13!GO:0048193;Golgi vesicle transport;5.2579759196985e-13!GO:0031965;nuclear membrane;5.48518953720719e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.8313910610298e-13!GO:0006281;DNA repair;8.31846092163554e-13!GO:0006915;apoptosis;1.12704985426826e-12!GO:0006260;DNA replication;2.58873458435484e-12!GO:0051726;regulation of cell cycle;2.85271665649957e-12!GO:0006413;translational initiation;3.05764972450516e-12!GO:0000074;regulation of progression through cell cycle;4.43160740571837e-12!GO:0016887;ATPase activity;4.61592094966212e-12!GO:0042623;ATPase activity, coupled;4.86637944794995e-12!GO:0009719;response to endogenous stimulus;5.35356458902353e-12!GO:0003743;translation initiation factor activity;5.77752468466641e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;7.54866521332354e-12!GO:0008219;cell death;1.40911523175407e-11!GO:0016265;death;1.40911523175407e-11!GO:0016604;nuclear body;2.56598382931515e-11!GO:0009055;electron carrier activity;2.88117590261013e-11!GO:0006323;DNA packaging;3.0742496342095e-11!GO:0048523;negative regulation of cellular process;3.4814687894325e-11!GO:0006732;coenzyme metabolic process;6.14578586953266e-11!GO:0005643;nuclear pore;6.68716629429285e-11!GO:0000785;chromatin;6.84116306915939e-11!GO:0006461;protein complex assembly;7.1530361849479e-11!GO:0006446;regulation of translational initiation;1.0618824893374e-10!GO:0015630;microtubule cytoskeleton;1.21490977819685e-10!GO:0065004;protein-DNA complex assembly;1.39621211861601e-10!GO:0004386;helicase activity;2.13598385809467e-10!GO:0006913;nucleocytoplasmic transport;2.59778450721142e-10!GO:0009259;ribonucleotide metabolic process;2.91216065750319e-10!GO:0006333;chromatin assembly or disassembly;3.45253007137327e-10!GO:0005793;ER-Golgi intermediate compartment;3.48271138907225e-10!GO:0008565;protein transporter activity;3.83479107219039e-10!GO:0003712;transcription cofactor activity;3.91004243537911e-10!GO:0006163;purine nucleotide metabolic process;4.9356716169338e-10!GO:0051169;nuclear transport;6.45685282658952e-10!GO:0006399;tRNA metabolic process;7.10626860250823e-10!GO:0050794;regulation of cellular process;7.59094714799828e-10!GO:0008639;small protein conjugating enzyme activity;8.07406073780784e-10!GO:0065002;intracellular protein transport across a membrane;8.60726169513002e-10!GO:0006364;rRNA processing;1.08220865419311e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.14656698932754e-09!GO:0004842;ubiquitin-protein ligase activity;1.41784560465763e-09!GO:0006793;phosphorus metabolic process;1.53094047858635e-09!GO:0006796;phosphate metabolic process;1.53094047858635e-09!GO:0009150;purine ribonucleotide metabolic process;1.60795218938087e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.05174602622442e-09!GO:0048519;negative regulation of biological process;2.45042795315015e-09!GO:0008026;ATP-dependent helicase activity;2.61001735343853e-09!GO:0006164;purine nucleotide biosynthetic process;2.8739851131432e-09!GO:0005789;endoplasmic reticulum membrane;2.94118476633722e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.27685798985722e-09!GO:0019787;small conjugating protein ligase activity;3.29918770735325e-09!GO:0009260;ribonucleotide biosynthetic process;3.35687331332497e-09!GO:0016072;rRNA metabolic process;3.8183393819651e-09!GO:0046930;pore complex;4.10909497998308e-09!GO:0050657;nucleic acid transport;6.24150274880355e-09!GO:0051236;establishment of RNA localization;6.24150274880355e-09!GO:0050658;RNA transport;6.24150274880355e-09!GO:0006403;RNA localization;6.38486513816607e-09!GO:0006334;nucleosome assembly;6.41082678981181e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.08226682640024e-09!GO:0009152;purine ribonucleotide biosynthetic process;9.26817132939157e-09!GO:0006366;transcription from RNA polymerase II promoter;9.56252649787615e-09!GO:0003924;GTPase activity;1.15920069624219e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.22758530929848e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.28228739286265e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.35871982678563e-08!GO:0031988;membrane-bound vesicle;1.50542599363403e-08!GO:0016607;nuclear speck;1.58370392052803e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.63625507305144e-08!GO:0016310;phosphorylation;1.69382448118925e-08!GO:0009141;nucleoside triphosphate metabolic process;1.73025014851897e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.73025014851897e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.73025014851897e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.73025014851897e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.44712935539799e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.44712935539799e-08!GO:0009060;aerobic respiration;2.60527427986166e-08!GO:0031497;chromatin assembly;2.96255163679335e-08!GO:0005819;spindle;3.3199652781597e-08!GO:0051188;cofactor biosynthetic process;4.29316232866069e-08!GO:0043038;amino acid activation;4.86522589623212e-08!GO:0006418;tRNA aminoacylation for protein translation;4.86522589623212e-08!GO:0043039;tRNA aminoacylation;4.86522589623212e-08!GO:0016881;acid-amino acid ligase activity;5.08967497107012e-08!GO:0009056;catabolic process;5.41803681188547e-08!GO:0043067;regulation of programmed cell death;5.80527178344604e-08!GO:0007010;cytoskeleton organization and biogenesis;6.15705972103855e-08!GO:0017038;protein import;6.35683111333368e-08!GO:0051246;regulation of protein metabolic process;8.32281984151483e-08!GO:0042981;regulation of apoptosis;8.71369608944592e-08!GO:0005525;GTP binding;8.81441603213419e-08!GO:0045333;cellular respiration;9.30115396317706e-08!GO:0009117;nucleotide metabolic process;1.07526967225684e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.10511015172841e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.10511015172841e-07!GO:0015986;ATP synthesis coupled proton transport;1.19544126230472e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.19544126230472e-07!GO:0016740;transferase activity;1.46999012895438e-07!GO:0031982;vesicle;1.58212812939504e-07!GO:0031410;cytoplasmic vesicle;1.58586382377889e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.58586382377889e-07!GO:0032446;protein modification by small protein conjugation;1.79159053224109e-07!GO:0046034;ATP metabolic process;2.05427897932544e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.1370903444259e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.1370903444259e-07!GO:0051028;mRNA transport;2.22081063811801e-07!GO:0030120;vesicle coat;2.31049390539698e-07!GO:0030662;coated vesicle membrane;2.31049390539698e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.48794978454745e-07!GO:0003697;single-stranded DNA binding;2.80459111871273e-07!GO:0007005;mitochondrion organization and biogenesis;3.06542373846853e-07!GO:0043069;negative regulation of programmed cell death;3.07943037485281e-07!GO:0043566;structure-specific DNA binding;3.58937212168878e-07!GO:0016567;protein ubiquitination;3.78355661433216e-07!GO:0019829;cation-transporting ATPase activity;3.91830998086259e-07!GO:0044431;Golgi apparatus part;4.3197402399728e-07!GO:0005788;endoplasmic reticulum lumen;4.77365841376e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.10296665632918e-07!GO:0006099;tricarboxylic acid cycle;5.85769901914815e-07!GO:0046356;acetyl-CoA catabolic process;5.85769901914815e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.2007330180648e-07!GO:0048475;coated membrane;8.30378578440082e-07!GO:0030117;membrane coat;8.30378578440082e-07!GO:0043066;negative regulation of apoptosis;8.88281864535324e-07!GO:0000245;spliceosome assembly;9.07844990655204e-07!GO:0005768;endosome;9.10671500694845e-07!GO:0019899;enzyme binding;9.45323612727454e-07!GO:0050789;regulation of biological process;1.00669918976014e-06!GO:0031252;leading edge;1.03754149244468e-06!GO:0032561;guanyl ribonucleotide binding;1.04685142759819e-06!GO:0019001;guanyl nucleotide binding;1.04685142759819e-06!GO:0051329;interphase of mitotic cell cycle;1.09270570627295e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.11464455656497e-06!GO:0000775;chromosome, pericentric region;1.22491456661491e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.32723921541789e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.32942494949507e-06!GO:0006916;anti-apoptosis;1.33048565207743e-06!GO:0005813;centrosome;1.36694842886266e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42502003961236e-06!GO:0051325;interphase;1.44891869099747e-06!GO:0006084;acetyl-CoA metabolic process;1.49392997467457e-06!GO:0006754;ATP biosynthetic process;1.64713800962361e-06!GO:0006753;nucleoside phosphate metabolic process;1.64713800962361e-06!GO:0045259;proton-transporting ATP synthase complex;1.70428171553861e-06!GO:0004298;threonine endopeptidase activity;1.72121211112683e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.83770317604645e-06!GO:0045786;negative regulation of progression through cell cycle;2.25166604581364e-06!GO:0007051;spindle organization and biogenesis;2.36102024031211e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.4191199032831e-06!GO:0009108;coenzyme biosynthetic process;2.6156190902816e-06!GO:0005667;transcription factor complex;2.97072609409475e-06!GO:0016779;nucleotidyltransferase activity;3.28415710255255e-06!GO:0005762;mitochondrial large ribosomal subunit;3.90511885023461e-06!GO:0000315;organellar large ribosomal subunit;3.90511885023461e-06!GO:0016568;chromatin modification;4.14095682699277e-06!GO:0005815;microtubule organizing center;4.14986864895589e-06!GO:0016787;hydrolase activity;4.83665538084264e-06!GO:0000151;ubiquitin ligase complex;4.83665538084264e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.83665538084264e-06!GO:0009109;coenzyme catabolic process;6.76942476343312e-06!GO:0043623;cellular protein complex assembly;7.33136694575146e-06!GO:0030029;actin filament-based process;7.47015435690807e-06!GO:0051187;cofactor catabolic process;7.9347916286185e-06!GO:0051170;nuclear import;8.58323706791174e-06!GO:0003724;RNA helicase activity;8.9216848545558e-06!GO:0000139;Golgi membrane;9.5999521092322e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.06334631886203e-05!GO:0006261;DNA-dependent DNA replication;1.1297999254271e-05!GO:0008092;cytoskeletal protein binding;1.40122827546271e-05!GO:0006613;cotranslational protein targeting to membrane;1.40915506734096e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.82031752000893e-05!GO:0016853;isomerase activity;1.88349087668037e-05!GO:0006752;group transfer coenzyme metabolic process;2.01649079527871e-05!GO:0031324;negative regulation of cellular metabolic process;2.03070086974981e-05!GO:0000075;cell cycle checkpoint;2.08614255024182e-05!GO:0003714;transcription corepressor activity;2.10255516255328e-05!GO:0006606;protein import into nucleus;2.17557275830059e-05!GO:0016563;transcription activator activity;2.8144943044296e-05!GO:0016859;cis-trans isomerase activity;2.82363957932217e-05!GO:0044440;endosomal part;3.58923035934745e-05!GO:0010008;endosome membrane;3.58923035934745e-05!GO:0005769;early endosome;3.65773939491908e-05!GO:0000786;nucleosome;3.96241883130598e-05!GO:0005874;microtubule;4.04137317240496e-05!GO:0016044;membrane organization and biogenesis;4.11097259659939e-05!GO:0019843;rRNA binding;4.24934860668557e-05!GO:0031968;organelle outer membrane;4.69740134040378e-05!GO:0001558;regulation of cell growth;5.10599494482293e-05!GO:0005798;Golgi-associated vesicle;5.17302903590125e-05!GO:0030867;rough endoplasmic reticulum membrane;5.32559920902308e-05!GO:0000314;organellar small ribosomal subunit;5.8412775351099e-05!GO:0005763;mitochondrial small ribosomal subunit;5.8412775351099e-05!GO:0007243;protein kinase cascade;5.96960388268263e-05!GO:0008361;regulation of cell size;6.16935729981809e-05!GO:0019867;outer membrane;6.20614455149518e-05!GO:0045454;cell redox homeostasis;6.28879044215269e-05!GO:0048471;perinuclear region of cytoplasm;6.33040151219745e-05!GO:0009892;negative regulation of metabolic process;6.41750392520666e-05!GO:0016049;cell growth;6.58209149909332e-05!GO:0048522;positive regulation of cellular process;6.70746160295766e-05!GO:0005905;coated pit;6.98667421175602e-05!GO:0008094;DNA-dependent ATPase activity;7.24540341495289e-05!GO:0005770;late endosome;7.50991033046691e-05!GO:0051427;hormone receptor binding;8.17823562617161e-05!GO:0043021;ribonucleoprotein binding;8.76150322624516e-05!GO:0016564;transcription repressor activity;8.76150322624516e-05!GO:0009165;nucleotide biosynthetic process;9.61884304471312e-05!GO:0003899;DNA-directed RNA polymerase activity;9.6538697796156e-05!GO:0003713;transcription coactivator activity;9.84246552313525e-05!GO:0042802;identical protein binding;9.94531156200785e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000127492302371561!GO:0005741;mitochondrial outer membrane;0.000134600520811418!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000137392089964636!GO:0051087;chaperone binding;0.000141257784100429!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000161162866072412!GO:0035257;nuclear hormone receptor binding;0.000175065691302801!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000199804170427366!GO:0006612;protein targeting to membrane;0.000206097605303357!GO:0030133;transport vesicle;0.000218223852819677!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000231639551653749!GO:0005885;Arp2/3 protein complex;0.000265045001300048!GO:0008654;phospholipid biosynthetic process;0.000278505616674698!GO:0008186;RNA-dependent ATPase activity;0.000300488126045132!GO:0016363;nuclear matrix;0.000309151030676107!GO:0006950;response to stress;0.000321203905588561!GO:0065009;regulation of a molecular function;0.000327430063310755!GO:0005657;replication fork;0.000357648621782647!GO:0000776;kinetochore;0.000373773750601438!GO:0005048;signal sequence binding;0.000385430491317161!GO:0033116;ER-Golgi intermediate compartment membrane;0.000398422306530817!GO:0007264;small GTPase mediated signal transduction;0.000521520206678462!GO:0051168;nuclear export;0.000534955446603911!GO:0008047;enzyme activator activity;0.000545615835976429!GO:0030880;RNA polymerase complex;0.000558679470839895!GO:0016491;oxidoreductase activity;0.000566415118872748!GO:0000059;protein import into nucleus, docking;0.00056807068533956!GO:0015980;energy derivation by oxidation of organic compounds;0.000568291464202076!GO:0003729;mRNA binding;0.000572322124553604!GO:0008250;oligosaccharyl transferase complex;0.000582188584180072!GO:0005773;vacuole;0.0005858253283097!GO:0065007;biological regulation;0.000630329973365119!GO:0006626;protein targeting to mitochondrion;0.000716664661704208!GO:0044452;nucleolar part;0.000728635701044719!GO:0000082;G1/S transition of mitotic cell cycle;0.000731329239627949!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000756065429502774!GO:0043681;protein import into mitochondrion;0.00075855480899789!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000763344562580477!GO:0004576;oligosaccharyl transferase activity;0.000830645375181773!GO:0031072;heat shock protein binding;0.000837736719069649!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000845335303533199!GO:0004004;ATP-dependent RNA helicase activity;0.000865844398620161!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000876815803049157!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000898368395639625!GO:0033673;negative regulation of kinase activity;0.000969322199181835!GO:0006469;negative regulation of protein kinase activity;0.000969322199181835!GO:0006414;translational elongation;0.000983080736268235!GO:0005684;U2-dependent spliceosome;0.00100300045563188!GO:0007017;microtubule-based process;0.00102672615694118!GO:0004674;protein serine/threonine kinase activity;0.00103909061645695!GO:0051052;regulation of DNA metabolic process;0.00105151682097898!GO:0051920;peroxiredoxin activity;0.00113102200867348!GO:0007088;regulation of mitosis;0.00116152227645305!GO:0006302;double-strand break repair;0.00116558906018122!GO:0016481;negative regulation of transcription;0.00116799053133572!GO:0007059;chromosome segregation;0.00117187928054828!GO:0051348;negative regulation of transferase activity;0.00117591413695098!GO:0003682;chromatin binding;0.00119416098079159!GO:0005791;rough endoplasmic reticulum;0.00125231775270459!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00126358150698!GO:0007093;mitotic cell cycle checkpoint;0.0013049761569676!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0013049761569676!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0013049761569676!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0013049761569676!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00133748671935958!GO:0000428;DNA-directed RNA polymerase complex;0.00133748671935958!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00136595394240221!GO:0018196;peptidyl-asparagine modification;0.00139418463387462!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00139418463387462!GO:0051789;response to protein stimulus;0.00142456707802612!GO:0006986;response to unfolded protein;0.00142456707802612!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00146774596283266!GO:0007052;mitotic spindle organization and biogenesis;0.00149106067378934!GO:0006383;transcription from RNA polymerase III promoter;0.00149422846993814!GO:0051252;regulation of RNA metabolic process;0.00168111572312439!GO:0003684;damaged DNA binding;0.00168438049664673!GO:0030027;lamellipodium;0.00180483161548226!GO:0048468;cell development;0.00180823672022968!GO:0030658;transport vesicle membrane;0.00187457041384142!GO:0008139;nuclear localization sequence binding;0.00192349666237667!GO:0003690;double-stranded DNA binding;0.00198421470895995!GO:0005637;nuclear inner membrane;0.00218146698021127!GO:0003779;actin binding;0.00222136140249135!GO:0008033;tRNA processing;0.00224114664622358!GO:0000323;lytic vacuole;0.00242036844502824!GO:0005764;lysosome;0.00242036844502824!GO:0006402;mRNA catabolic process;0.00243554330225239!GO:0040008;regulation of growth;0.00245641780733383!GO:0019222;regulation of metabolic process;0.00250673068515398!GO:0015631;tubulin binding;0.002530862893532!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00266384998728925!GO:0015399;primary active transmembrane transporter activity;0.00266384998728925!GO:0030663;COPI coated vesicle membrane;0.00270595980987576!GO:0030126;COPI vesicle coat;0.00270595980987576!GO:0001726;ruffle;0.00273137288069895!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00277685181723502!GO:0003678;DNA helicase activity;0.00277884736926076!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00277884736926076!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00277884736926076!GO:0006897;endocytosis;0.00278401777169721!GO:0010324;membrane invagination;0.00278401777169721!GO:0045045;secretory pathway;0.00282804540125769!GO:0030118;clathrin coat;0.00282804540125769!GO:0006839;mitochondrial transport;0.00282804540125769!GO:0048500;signal recognition particle;0.00283115560492644!GO:0030659;cytoplasmic vesicle membrane;0.00283800900757885!GO:0006401;RNA catabolic process;0.00293233888142636!GO:0051128;regulation of cellular component organization and biogenesis;0.00311887742235058!GO:0035258;steroid hormone receptor binding;0.00325506711337175!GO:0043488;regulation of mRNA stability;0.00325506711337175!GO:0043487;regulation of RNA stability;0.00325506711337175!GO:0006091;generation of precursor metabolites and energy;0.00328066749199753!GO:0005096;GTPase activator activity;0.00339272854208791!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00366838705422254!GO:0005876;spindle microtubule;0.00372330209454079!GO:0006310;DNA recombination;0.00388653267733392!GO:0007006;mitochondrial membrane organization and biogenesis;0.00404000008394757!GO:0017166;vinculin binding;0.0042121346733508!GO:0030660;Golgi-associated vesicle membrane;0.00426647445122484!GO:0044433;cytoplasmic vesicle part;0.00426647445122484!GO:0043086;negative regulation of catalytic activity;0.00443702075156607!GO:0050790;regulation of catalytic activity;0.0045467654806654!GO:0016197;endosome transport;0.00457356702726097!GO:0008632;apoptotic program;0.00492908572462072!GO:0030134;ER to Golgi transport vesicle;0.00530151261181922!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00536393136531327!GO:0051270;regulation of cell motility;0.00547626693068772!GO:0006352;transcription initiation;0.00566416070490714!GO:0048487;beta-tubulin binding;0.00585902204039275!GO:0008312;7S RNA binding;0.00605945301569472!GO:0007050;cell cycle arrest;0.00611255364753924!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00635081217291596!GO:0030137;COPI-coated vesicle;0.00644501155701855!GO:0006891;intra-Golgi vesicle-mediated transport;0.00645906518852942!GO:0016126;sterol biosynthetic process;0.00647098427972888!GO:0016301;kinase activity;0.00648292733767742!GO:0032508;DNA duplex unwinding;0.00653959832249945!GO:0032392;DNA geometric change;0.00653959832249945!GO:0006595;polyamine metabolic process;0.00668297485377372!GO:0007162;negative regulation of cell adhesion;0.00669979081540243!GO:0005938;cell cortex;0.00676548259381667!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00679936344366728!GO:0030132;clathrin coat of coated pit;0.00685844828305813!GO:0030127;COPII vesicle coat;0.0069446645834528!GO:0012507;ER to Golgi transport vesicle membrane;0.0069446645834528!GO:0043284;biopolymer biosynthetic process;0.00715173790669038!GO:0046467;membrane lipid biosynthetic process;0.00735480468469182!GO:0000049;tRNA binding;0.00747682468676428!GO:0006268;DNA unwinding during replication;0.00767187115627854!GO:0006275;regulation of DNA replication;0.00780655485641164!GO:0005856;cytoskeleton;0.00807617090232097!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0081578421529586!GO:0045047;protein targeting to ER;0.0081578421529586!GO:0009116;nucleoside metabolic process;0.00823265462890335!GO:0006509;membrane protein ectodomain proteolysis;0.00856504012538689!GO:0033619;membrane protein proteolysis;0.00856504012538689!GO:0040011;locomotion;0.00918206360194395!GO:0000792;heterochromatin;0.00923822262328474!GO:0046474;glycerophospholipid biosynthetic process;0.00932125382624123!GO:0048518;positive regulation of biological process;0.00932125382624123!GO:0007040;lysosome organization and biogenesis;0.00936375804876904!GO:0012506;vesicle membrane;0.00955219900374362!GO:0006611;protein export from nucleus;0.00967055907249799!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00968823193381314!GO:0030145;manganese ion binding;0.00972820602470663!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00975257190766658!GO:0030308;negative regulation of cell growth;0.0098008325024533!GO:0051540;metal cluster binding;0.00981440487155484!GO:0051536;iron-sulfur cluster binding;0.00981440487155484!GO:0031901;early endosome membrane;0.010070824082213!GO:0001568;blood vessel development;0.0100834024534833!GO:0007242;intracellular signaling cascade;0.010097790511255!GO:0043022;ribosome binding;0.0101533667774856!GO:0045792;negative regulation of cell size;0.0102304912588191!GO:0008283;cell proliferation;0.0103230875184537!GO:0001944;vasculature development;0.0103263936848304!GO:0022408;negative regulation of cell-cell adhesion;0.0104459093800613!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105104181158746!GO:0005862;muscle thin filament tropomyosin;0.0105609419439791!GO:0016272;prefoldin complex;0.0105609419439791!GO:0030032;lamellipodium biogenesis;0.0105777734968396!GO:0008180;signalosome;0.0107153218473037!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0112308202132552!GO:0007265;Ras protein signal transduction;0.011291170510688!GO:0006695;cholesterol biosynthetic process;0.0113619356883936!GO:0005832;chaperonin-containing T-complex;0.0113619356883936!GO:0030031;cell projection biogenesis;0.0115437595045331!GO:0015992;proton transport;0.0115468440983692!GO:0045893;positive regulation of transcription, DNA-dependent;0.0119867133111173!GO:0030521;androgen receptor signaling pathway;0.0121334718084472!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121496684036737!GO:0015002;heme-copper terminal oxidase activity;0.0121496684036737!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121496684036737!GO:0004129;cytochrome-c oxidase activity;0.0121496684036737!GO:0006284;base-excision repair;0.0124291550921278!GO:0006818;hydrogen transport;0.0129165530147417!GO:0008022;protein C-terminus binding;0.0129525641232102!GO:0040012;regulation of locomotion;0.0129745128339473!GO:0008154;actin polymerization and/or depolymerization;0.0131147404005764!GO:0000910;cytokinesis;0.0131147404005764!GO:0009112;nucleobase metabolic process;0.0131280473561626!GO:0001952;regulation of cell-matrix adhesion;0.0132419306996251!GO:0044262;cellular carbohydrate metabolic process;0.0133196722044547!GO:0006144;purine base metabolic process;0.0135957717467697!GO:0030176;integral to endoplasmic reticulum membrane;0.0137672449804221!GO:0046483;heterocycle metabolic process;0.0138433066888906!GO:0030041;actin filament polymerization;0.0140105687510105!GO:0045941;positive regulation of transcription;0.0140313403331703!GO:0007021;tubulin folding;0.0144767396466175!GO:0008286;insulin receptor signaling pathway;0.0145248938988667!GO:0000339;RNA cap binding;0.0146175554049919!GO:0051287;NAD binding;0.0148084984434103!GO:0004527;exonuclease activity;0.0151330712079518!GO:0031625;ubiquitin protein ligase binding;0.0154353920474873!GO:0005083;small GTPase regulator activity;0.0155183216374147!GO:0043492;ATPase activity, coupled to movement of substances;0.0156281155896072!GO:0051101;regulation of DNA binding;0.0159071716162611!GO:0000922;spindle pole;0.0159439064671329!GO:0016584;nucleosome positioning;0.0159649865970219!GO:0006740;NADPH regeneration;0.0159649865970219!GO:0006098;pentose-phosphate shunt;0.0159649865970219!GO:0030119;AP-type membrane coat adaptor complex;0.0161576062329943!GO:0015036;disulfide oxidoreductase activity;0.0165679237368568!GO:0004518;nuclease activity;0.0165719061348309!GO:0009967;positive regulation of signal transduction;0.0174853688997543!GO:0006289;nucleotide-excision repair;0.0175684935979208!GO:0046489;phosphoinositide biosynthetic process;0.0179040208253089!GO:0001953;negative regulation of cell-matrix adhesion;0.0179728903807527!GO:0031529;ruffle organization and biogenesis;0.0180662721864288!GO:0048660;regulation of smooth muscle cell proliferation;0.0180813391412322!GO:0031124;mRNA 3'-end processing;0.0184584713787515!GO:0030125;clathrin vesicle coat;0.0187414157992958!GO:0030665;clathrin coated vesicle membrane;0.0187414157992958!GO:0032940;secretion by cell;0.0187486186110794!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0190544632461217!GO:0033043;regulation of organelle organization and biogenesis;0.0190544632461217!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0190548281412827!GO:0005869;dynactin complex;0.0193333034717863!GO:0019206;nucleoside kinase activity;0.0195360152607782!GO:0008287;protein serine/threonine phosphatase complex;0.0195638703802746!GO:0006220;pyrimidine nucleotide metabolic process;0.0195638703802746!GO:0051338;regulation of transferase activity;0.020017838932085!GO:0035267;NuA4 histone acetyltransferase complex;0.0200355182209727!GO:0016408;C-acyltransferase activity;0.0200478261559811!GO:0006672;ceramide metabolic process;0.0201437894700106!GO:0000228;nuclear chromosome;0.0204680468107714!GO:0030496;midbody;0.0205353398167695!GO:0051539;4 iron, 4 sulfur cluster binding;0.0205523132344556!GO:0007033;vacuole organization and biogenesis;0.0208892167530758!GO:0006778;porphyrin metabolic process;0.0208892167530758!GO:0033013;tetrapyrrole metabolic process;0.0208892167530758!GO:0046519;sphingoid metabolic process;0.0209637713512806!GO:0016251;general RNA polymerase II transcription factor activity;0.0209637713512806!GO:0004003;ATP-dependent DNA helicase activity;0.020998200978375!GO:0003756;protein disulfide isomerase activity;0.0212729302725992!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0212729302725992!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0216079336318554!GO:0004177;aminopeptidase activity;0.0216335062539215!GO:0006520;amino acid metabolic process;0.0216753629700704!GO:0031902;late endosome membrane;0.0216804666644089!GO:0006405;RNA export from nucleus;0.0221430737355099!GO:0030131;clathrin adaptor complex;0.0223445959418846!GO:0006892;post-Golgi vesicle-mediated transport;0.0230124355125798!GO:0008538;proteasome activator activity;0.0230157458753776!GO:0000209;protein polyubiquitination;0.0232328503043906!GO:0043189;H4/H2A histone acetyltransferase complex;0.0233090670521994!GO:0050681;androgen receptor binding;0.0235331947219373!GO:0007346;regulation of progression through mitotic cell cycle;0.0236034801844846!GO:0008017;microtubule binding;0.0248576436754001!GO:0006376;mRNA splice site selection;0.025047918592347!GO:0000389;nuclear mRNA 3'-splice site recognition;0.025047918592347!GO:0005100;Rho GTPase activator activity;0.0251834699561449!GO:0003711;transcription elongation regulator activity;0.0254356678995066!GO:0030833;regulation of actin filament polymerization;0.0254356678995066!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0263153841667873!GO:0003746;translation elongation factor activity;0.0263153841667873!GO:0006779;porphyrin biosynthetic process;0.0266554048316745!GO:0033014;tetrapyrrole biosynthetic process;0.0266554048316745!GO:0008637;apoptotic mitochondrial changes;0.026797740374772!GO:0016311;dephosphorylation;0.0277525405190724!GO:0004680;casein kinase activity;0.0278605757949907!GO:0008320;protein transmembrane transporter activity;0.0287655490135904!GO:0006979;response to oxidative stress;0.0296882180420437!GO:0006338;chromatin remodeling;0.0297975663902933!GO:0048514;blood vessel morphogenesis;0.0303516060425633!GO:0000178;exosome (RNase complex);0.0306023003044607!GO:0005669;transcription factor TFIID complex;0.0306067703937326!GO:0042393;histone binding;0.0306363769881993!GO:0008629;induction of apoptosis by intracellular signals;0.0306363769881993!GO:0043549;regulation of kinase activity;0.0307164174173585!GO:0031371;ubiquitin conjugating enzyme complex;0.0310173939155234!GO:0031543;peptidyl-proline dioxygenase activity;0.0311631027096567!GO:0005784;translocon complex;0.0311631027096567!GO:0016741;transferase activity, transferring one-carbon groups;0.0312653508107222!GO:0030334;regulation of cell migration;0.031710020026027!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0319380438473831!GO:0043065;positive regulation of apoptosis;0.0321188464499594!GO:0031970;organelle envelope lumen;0.0322344216602945!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0324151450973233!GO:0008168;methyltransferase activity;0.0324506449588393!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0326868022609695!GO:0006417;regulation of translation;0.0326868022609695!GO:0019904;protein domain specific binding;0.0328161115836028!GO:0005758;mitochondrial intermembrane space;0.0328161270556477!GO:0047485;protein N-terminus binding;0.0329055944565717!GO:0000096;sulfur amino acid metabolic process;0.0329522352072344!GO:0004722;protein serine/threonine phosphatase activity;0.0334210054847662!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.033509896050876!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0335157031527927!GO:0051059;NF-kappaB binding;0.0335157031527927!GO:0032984;macromolecular complex disassembly;0.0337707104611341!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0341919508337093!GO:0043068;positive regulation of programmed cell death;0.0342375304464794!GO:0003702;RNA polymerase II transcription factor activity;0.0346096147322059!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0346096147322059!GO:0050178;phenylpyruvate tautomerase activity;0.0347826959757462!GO:0043624;cellular protein complex disassembly;0.0348610257552179!GO:0022415;viral reproductive process;0.0348625471928766!GO:0042168;heme metabolic process;0.0348951290698308!GO:0000123;histone acetyltransferase complex;0.0353928390454826!GO:0051098;regulation of binding;0.0355620209938826!GO:0006650;glycerophospholipid metabolic process;0.0355739606910114!GO:0045926;negative regulation of growth;0.0355739606910114!GO:0022406;membrane docking;0.0362206853638059!GO:0048278;vesicle docking;0.0362206853638059!GO:0019798;procollagen-proline dioxygenase activity;0.0365766198396609!GO:0004860;protein kinase inhibitor activity;0.0365766810269569!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0366435260973982!GO:0010257;NADH dehydrogenase complex assembly;0.0366435260973982!GO:0033108;mitochondrial respiratory chain complex assembly;0.0366435260973982!GO:0008234;cysteine-type peptidase activity;0.0367541339228474!GO:0033559;unsaturated fatty acid metabolic process;0.0367945903205303!GO:0006636;unsaturated fatty acid biosynthetic process;0.0367945903205303!GO:0009124;nucleoside monophosphate biosynthetic process;0.0370435166139427!GO:0009123;nucleoside monophosphate metabolic process;0.0370435166139427!GO:0043407;negative regulation of MAP kinase activity;0.0372023084877384!GO:0043433;negative regulation of transcription factor activity;0.0373418838630963!GO:0030911;TPR domain binding;0.0377704207201283!GO:0005099;Ras GTPase activator activity;0.038243502778673!GO:0004448;isocitrate dehydrogenase activity;0.0388008896311032!GO:0005652;nuclear lamina;0.0388008896311032!GO:0009303;rRNA transcription;0.0388165749959708!GO:0019887;protein kinase regulator activity;0.0392477211759584!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0396178684933898!GO:0048146;positive regulation of fibroblast proliferation;0.0400487712832773!GO:0035035;histone acetyltransferase binding;0.0401384772466909!GO:0007266;Rho protein signal transduction;0.0406949516231885!GO:0031123;RNA 3'-end processing;0.0407018584289088!GO:0043281;regulation of caspase activity;0.0413047630309477!GO:0032906;transforming growth factor-beta2 production;0.0414996091423147!GO:0032909;regulation of transforming growth factor-beta2 production;0.0414996091423147!GO:0030508;thiol-disulfide exchange intermediate activity;0.0416492635604287!GO:0008610;lipid biosynthetic process;0.0420531833308488!GO:0022890;inorganic cation transmembrane transporter activity;0.0425034290837895!GO:0030100;regulation of endocytosis;0.0426635450504254!GO:0045859;regulation of protein kinase activity;0.0426635450504254!GO:0045892;negative regulation of transcription, DNA-dependent;0.0427445813140464!GO:0006783;heme biosynthetic process;0.0431577121296383!GO:0005092;GDP-dissociation inhibitor activity;0.0439515833483883!GO:0009262;deoxyribonucleotide metabolic process;0.0447980744359139!GO:0001525;angiogenesis;0.0450953255488612!GO:0006378;mRNA polyadenylation;0.0451579581353973!GO:0048144;fibroblast proliferation;0.0451579581353973!GO:0048145;regulation of fibroblast proliferation;0.0451579581353973!GO:0030695;GTPase regulator activity;0.0465363607290796!GO:0007044;cell-substrate junction assembly;0.0468022872801617!GO:0042770;DNA damage response, signal transduction;0.0483612150779481!GO:0000070;mitotic sister chromatid segregation;0.0491310881025873!GO:0043241;protein complex disassembly;0.0492994968724694!GO:0006458;'de novo' protein folding;0.0492994968724694!GO:0051084;'de novo' posttranslational protein folding;0.0492994968724694!GO:0043130;ubiquitin binding;0.0497291575822697!GO:0032182;small conjugating protein binding;0.0497291575822697!GO:0043596;nuclear replication fork;0.049911267336276 | |||
|sample_id=11675 | |sample_id=11675 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=RXR{A,B,G}:1.56002504088;IKZF2:1.26576292319;NFATC1..3:1.20683352705;SOX{8,9,10}:1.19295221849;ADNP_IRX_SIX_ZHX:1.18781503119;PAX8:1.18239155809;ALX1:1.14239777262;FOXL1:1.12186771443;UFEwm:1.04549020011;TLX1..3_NFIC{dimer}:0.963327208107;GATA4:0.940468797469;SOX2:0.926850789324;XCPE1{core}:0.897417605474;CDC5L:0.886514857195;FOXD3:0.863969280598;HMGA1,2:0.811783908622;GFI1:0.806784215569;PAX1,9:0.785434075617;E2F1..5:0.774993568568;ZIC1..3:0.75262960961;AIRE:0.737129758811;GZF1:0.728388571304;TFDP1:0.723244148875;IKZF1:0.68382418911;POU1F1:0.664210641722;TEF:0.653490377647;PAX5:0.647021625489;ONECUT1,2:0.644815944404;ALX4:0.626356302441;SOX5:0.615313247278;SOX17:0.613947905223;SPZ1:0.593541814261;TFAP2{A,C}:0.588821709171;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.572515202201;TFAP4:0.567425148816;NKX3-1:0.562216079502;ZNF384:0.557894001518;POU6F1:0.55392921597;TP53:0.537993450911;T:0.532574767451;NR3C1:0.532450992723;TEAD1:0.529733055733;MTE{core}:0.488181344679;PAX6:0.472089377671;KLF4:0.466470787478;GCM1,2:0.419939821568;HOX{A5,B5}:0.390036123288;ZFP161:0.373684111138;HSF1,2:0.363986195809;NFY{A,B,C}:0.363484154613;ETS1,2:0.359661040627;ELF1,2,4:0.339273941791;HES1:0.335973153172;EN1,2:0.33111417089;STAT5{A,B}:0.312700042426;TBP:0.309046145222;FOX{I1,J2}:0.30404951904;ZNF148:0.301176019033;STAT2,4,6:0.290566532055;HBP1_HMGB_SSRP1_UBTF:0.277989327219;GFI1B:0.277702964699;MYB:0.273467883157;ZBTB16:0.257866353525;bHLH_family:0.252123671119;POU3F1..4:0.24423844369;MYBL2:0.231193786546;ARID5B:0.208820992689;RBPJ:0.206588228911;HIC1:0.197954009351;GTF2A1,2:0.188170569411;HNF1A:0.185784741262;EVI1:0.181664115451;AR:0.180993489807;PAX4:0.17971342364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.16260033397;SRF:0.151921590468;NR5A1,2:0.148380886176;PPARG:0.135966462683;GATA6:0.126022854162;NR6A1:0.120246109603;SMAD1..7,9:0.112800249528;EBF1:0.108934781298;PRDM1:0.108106891682;ZBTB6:0.101862010516;SPIB:0.101408215153;LHX3,4:0.101333370405;HAND1,2:0.101116829414;SP1:0.0969816493793;POU2F1..3:0.0915246843476;BACH2:0.0714360948437;FOSL2:0.0667298010447;HNF4A_NR2F1,2:0.0605194027081;MZF1:0.0439436754559;POU5F1:0.0317175516567;TBX4,5:0.0294879695911;GTF2I:0.0250602762138;YY1:0.0166346963536;FOXA2:0.006695649174;MAZ:0.00106511774464;PBX1:0.000312018034659;MED-1{core}:-0.00620292932008;HOXA9_MEIS1:-0.00664467350415;FOXM1:-0.00946453316191;PATZ1:-0.0197379562797;NR1H4:-0.0202148588714;GLI1..3:-0.0206704670228;NFE2:-0.0411686374321;ZNF143:-0.0470205708922;PITX1..3:-0.0528806329876;SPI1:-0.0545894920372;NKX3-2:-0.0583750170798;TFAP2B:-0.0693938709584;LEF1_TCF7_TCF7L1,2:-0.0722761498754;EGR1..3:-0.0925967493295;DBP:-0.0984157415212;MTF1:-0.100044940747;NKX2-2,8:-0.114364885353;NFE2L1:-0.115459450869;BPTF:-0.120880004881;CDX1,2,4:-0.125626535703;NFE2L2:-0.131378112215;FOS_FOS{B,L1}_JUN{B,D}:-0.135505222097;PDX1:-0.138088452477;NRF1:-0.157527971737;FOXQ1:-0.159615754791;CUX2:-0.163768395731;HOX{A4,D4}:-0.174656108412;PAX3,7:-0.181942405927;IRF7:-0.191437650191;MYOD1:-0.193266769581;REST:-0.216233228702;IRF1,2:-0.218914616367;NHLH1,2:-0.284306416082;NFKB1_REL_RELA:-0.287118246728;NKX2-3_NKX2-5:-0.288795164227;OCT4_SOX2{dimer}:-0.296082836924;MEF2{A,B,C,D}:-0.299479041944;TOPORS:-0.344287392519;BREu{core}:-0.351378589229;DMAP1_NCOR{1,2}_SMARC:-0.356192722105;ZNF423:-0.36420058235;FOX{F1,F2,J1}:-0.371677400201;EP300:-0.388255629973;CRX:-0.394040673807;SNAI1..3:-0.394342085004;RORA:-0.401032578073;ATF2:-0.401998605837;NANOG{mouse}:-0.411863816068;XBP1:-0.415941131699;AHR_ARNT_ARNT2:-0.438142022046;ELK1,4_GABP{A,B1}:-0.441660119211;MYFfamily:-0.442374140482;TAL1_TCF{3,4,12}:-0.450989077547;TFCP2:-0.452408404115;ZNF238:-0.459337048396;PAX2:-0.480867717651;RUNX1..3:-0.49263159804;ATF6:-0.495279202327;FOX{D1,D2}:-0.497207005932;RREB1:-0.498853544836;FOXP3:-0.512687086599;ZEB1:-0.530495675336;RXRA_VDR{dimer}:-0.531464564038;RFX1:-0.543464034505;HLF:-0.567374042309;ESRRA:-0.592642210446;NANOG:-0.606310292427;VSX1,2:-0.612510904576;FOXN1:-0.666982009008;CEBPA,B_DDIT3:-0.670762679492;LMO2:-0.732296872172;CREB1:-0.746710684351;JUN:-0.748425121743;ATF4:-0.76092139462;PRRX1,2:-0.773675507827;NFIX:-0.789278849991;TGIF1:-0.790318340501;NKX2-1,4:-0.793656515596;NKX6-1,2:-0.811133255353;FOXP1:-0.81215603126;FOXO1,3,4:-0.821809109953;STAT1,3:-0.825333293962;MAFB:-0.838388339219;ATF5_CREB3:-0.856597362811;SREBF1,2:-0.863882207417;RFX2..5_RFXANK_RFXAP:-0.874405207387;NFIL3:-0.921631897494;ESR1:-0.983296776494;HMX1:-0.989102803262;HIF1A:-1.02046897576;TLX2:-1.11000791231;HOX{A6,A7,B6,B7}:-1.3829460623 | |top_motifs=RXR{A,B,G}:1.56002504088;IKZF2:1.26576292319;NFATC1..3:1.20683352705;SOX{8,9,10}:1.19295221849;ADNP_IRX_SIX_ZHX:1.18781503119;PAX8:1.18239155809;ALX1:1.14239777262;FOXL1:1.12186771443;UFEwm:1.04549020011;TLX1..3_NFIC{dimer}:0.963327208107;GATA4:0.940468797469;SOX2:0.926850789324;XCPE1{core}:0.897417605474;CDC5L:0.886514857195;FOXD3:0.863969280598;HMGA1,2:0.811783908622;GFI1:0.806784215569;PAX1,9:0.785434075617;E2F1..5:0.774993568568;ZIC1..3:0.75262960961;AIRE:0.737129758811;GZF1:0.728388571304;TFDP1:0.723244148875;IKZF1:0.68382418911;POU1F1:0.664210641722;TEF:0.653490377647;PAX5:0.647021625489;ONECUT1,2:0.644815944404;ALX4:0.626356302441;SOX5:0.615313247278;SOX17:0.613947905223;SPZ1:0.593541814261;TFAP2{A,C}:0.588821709171;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.572515202201;TFAP4:0.567425148816;NKX3-1:0.562216079502;ZNF384:0.557894001518;POU6F1:0.55392921597;TP53:0.537993450911;T:0.532574767451;NR3C1:0.532450992723;TEAD1:0.529733055733;MTE{core}:0.488181344679;PAX6:0.472089377671;KLF4:0.466470787478;GCM1,2:0.419939821568;HOX{A5,B5}:0.390036123288;ZFP161:0.373684111138;HSF1,2:0.363986195809;NFY{A,B,C}:0.363484154613;ETS1,2:0.359661040627;ELF1,2,4:0.339273941791;HES1:0.335973153172;EN1,2:0.33111417089;STAT5{A,B}:0.312700042426;TBP:0.309046145222;FOX{I1,J2}:0.30404951904;ZNF148:0.301176019033;STAT2,4,6:0.290566532055;HBP1_HMGB_SSRP1_UBTF:0.277989327219;GFI1B:0.277702964699;MYB:0.273467883157;ZBTB16:0.257866353525;bHLH_family:0.252123671119;POU3F1..4:0.24423844369;MYBL2:0.231193786546;ARID5B:0.208820992689;RBPJ:0.206588228911;HIC1:0.197954009351;GTF2A1,2:0.188170569411;HNF1A:0.185784741262;EVI1:0.181664115451;AR:0.180993489807;PAX4:0.17971342364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.16260033397;SRF:0.151921590468;NR5A1,2:0.148380886176;PPARG:0.135966462683;GATA6:0.126022854162;NR6A1:0.120246109603;SMAD1..7,9:0.112800249528;EBF1:0.108934781298;PRDM1:0.108106891682;ZBTB6:0.101862010516;SPIB:0.101408215153;LHX3,4:0.101333370405;HAND1,2:0.101116829414;SP1:0.0969816493793;POU2F1..3:0.0915246843476;BACH2:0.0714360948437;FOSL2:0.0667298010447;HNF4A_NR2F1,2:0.0605194027081;MZF1:0.0439436754559;POU5F1:0.0317175516567;TBX4,5:0.0294879695911;GTF2I:0.0250602762138;YY1:0.0166346963536;FOXA2:0.006695649174;MAZ:0.00106511774464;PBX1:0.000312018034659;MED-1{core}:-0.00620292932008;HOXA9_MEIS1:-0.00664467350415;FOXM1:-0.00946453316191;PATZ1:-0.0197379562797;NR1H4:-0.0202148588714;GLI1..3:-0.0206704670228;NFE2:-0.0411686374321;ZNF143:-0.0470205708922;PITX1..3:-0.0528806329876;SPI1:-0.0545894920372;NKX3-2:-0.0583750170798;TFAP2B:-0.0693938709584;LEF1_TCF7_TCF7L1,2:-0.0722761498754;EGR1..3:-0.0925967493295;DBP:-0.0984157415212;MTF1:-0.100044940747;NKX2-2,8:-0.114364885353;NFE2L1:-0.115459450869;BPTF:-0.120880004881;CDX1,2,4:-0.125626535703;NFE2L2:-0.131378112215;FOS_FOS{B,L1}_JUN{B,D}:-0.135505222097;PDX1:-0.138088452477;NRF1:-0.157527971737;FOXQ1:-0.159615754791;CUX2:-0.163768395731;HOX{A4,D4}:-0.174656108412;PAX3,7:-0.181942405927;IRF7:-0.191437650191;MYOD1:-0.193266769581;REST:-0.216233228702;IRF1,2:-0.218914616367;NHLH1,2:-0.284306416082;NFKB1_REL_RELA:-0.287118246728;NKX2-3_NKX2-5:-0.288795164227;OCT4_SOX2{dimer}:-0.296082836924;MEF2{A,B,C,D}:-0.299479041944;TOPORS:-0.344287392519;BREu{core}:-0.351378589229;DMAP1_NCOR{1,2}_SMARC:-0.356192722105;ZNF423:-0.36420058235;FOX{F1,F2,J1}:-0.371677400201;EP300:-0.388255629973;CRX:-0.394040673807;SNAI1..3:-0.394342085004;RORA:-0.401032578073;ATF2:-0.401998605837;NANOG{mouse}:-0.411863816068;XBP1:-0.415941131699;AHR_ARNT_ARNT2:-0.438142022046;ELK1,4_GABP{A,B1}:-0.441660119211;MYFfamily:-0.442374140482;TAL1_TCF{3,4,12}:-0.450989077547;TFCP2:-0.452408404115;ZNF238:-0.459337048396;PAX2:-0.480867717651;RUNX1..3:-0.49263159804;ATF6:-0.495279202327;FOX{D1,D2}:-0.497207005932;RREB1:-0.498853544836;FOXP3:-0.512687086599;ZEB1:-0.530495675336;RXRA_VDR{dimer}:-0.531464564038;RFX1:-0.543464034505;HLF:-0.567374042309;ESRRA:-0.592642210446;NANOG:-0.606310292427;VSX1,2:-0.612510904576;FOXN1:-0.666982009008;CEBPA,B_DDIT3:-0.670762679492;LMO2:-0.732296872172;CREB1:-0.746710684351;JUN:-0.748425121743;ATF4:-0.76092139462;PRRX1,2:-0.773675507827;NFIX:-0.789278849991;TGIF1:-0.790318340501;NKX2-1,4:-0.793656515596;NKX6-1,2:-0.811133255353;FOXP1:-0.81215603126;FOXO1,3,4:-0.821809109953;STAT1,3:-0.825333293962;MAFB:-0.838388339219;ATF5_CREB3:-0.856597362811;SREBF1,2:-0.863882207417;RFX2..5_RFXANK_RFXAP:-0.874405207387;NFIL3:-0.921631897494;ESR1:-0.983296776494;HMX1:-0.989102803262;HIF1A:-1.02046897576;TLX2:-1.11000791231;HOX{A6,A7,B6,B7}:-1.3829460623 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11675-122H1;search_select_hide=table117:FF:11675-122H1 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Renal Glomerular Endothelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12624 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12624
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12624
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.37 |
| 10 | 10 | 0.239 |
| 100 | 100 | 0.299 |
| 101 | 101 | 0.164 |
| 102 | 102 | 0.81 |
| 103 | 103 | 0.518 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.0992 |
| 106 | 106 | 0.381 |
| 107 | 107 | 0.0336 |
| 108 | 108 | 0.75 |
| 109 | 109 | 0.587 |
| 11 | 11 | 0.829 |
| 110 | 110 | 0.582 |
| 111 | 111 | 0.436 |
| 112 | 112 | 0.571 |
| 113 | 113 | 0.342 |
| 114 | 114 | 0.36 |
| 115 | 115 | 0.521 |
| 116 | 116 | 0.81 |
| 117 | 117 | 0.0622 |
| 118 | 118 | 0.715 |
| 119 | 119 | 0.881 |
| 12 | 12 | 0.0506 |
| 120 | 120 | 0.00892 |
| 121 | 121 | 0.944 |
| 122 | 122 | 0.361 |
| 123 | 123 | 0.00184 |
| 124 | 124 | 0.0561 |
| 125 | 125 | 0.995 |
| 126 | 126 | 0.998 |
| 127 | 127 | 0.481 |
| 128 | 128 | 0.874 |
| 129 | 129 | 0.895 |
| 13 | 13 | 0.466 |
| 130 | 130 | 0.454 |
| 131 | 131 | 0.0734 |
| 132 | 132 | 0.364 |
| 133 | 133 | 0.792 |
| 134 | 134 | 0.415 |
| 135 | 135 | 0.974 |
| 136 | 136 | 0.0451 |
| 137 | 137 | 0.11 |
| 138 | 138 | 0.977 |
| 139 | 139 | 0.00975 |
| 14 | 14 | 0.29 |
| 140 | 140 | 0.892 |
| 141 | 141 | 0.707 |
| 142 | 142 | 0.261 |
| 143 | 143 | 0.487 |
| 144 | 144 | 0.834 |
| 145 | 145 | 0.603 |
| 146 | 146 | 0.823 |
| 147 | 147 | 0.0409 |
| 148 | 148 | 0.498 |
| 149 | 149 | 0.821 |
| 15 | 15 | 0.274 |
| 150 | 150 | 0.0548 |
| 151 | 151 | 0.244 |
| 152 | 152 | 0.0125 |
| 153 | 153 | 0.198 |
| 154 | 154 | 0.861 |
| 155 | 155 | 0.148 |
| 156 | 156 | 0.428 |
| 157 | 157 | 0.0421 |
| 158 | 158 | 0.0641 |
| 159 | 159 | 0.546 |
| 16 | 16 | 0.812 |
| 160 | 160 | 0.138 |
| 161 | 161 | 0.673 |
| 162 | 162 | 0.246 |
| 163 | 163 | 0.4 |
| 164 | 164 | 0.442 |
| 165 | 165 | 0.876 |
| 166 | 166 | 0.544 |
| 167 | 167 | 0.148 |
| 168 | 168 | 0.182 |
| 169 | 169 | 0.635 |
| 17 | 17 | 0.735 |
| 18 | 18 | 0.874 |
| 19 | 19 | 0.987 |
| 2 | 2 | 0.843 |
| 20 | 20 | 0.533 |
| 21 | 21 | 0.942 |
| 22 | 22 | 0.292 |
| 23 | 23 | 0.861 |
| 24 | 24 | 0.448 |
| 25 | 25 | 0.651 |
| 26 | 26 | 0.843 |
| 27 | 27 | 0.862 |
| 28 | 28 | 0.254 |
| 29 | 29 | 0.494 |
| 3 | 3 | 0.362 |
| 30 | 30 | 0.788 |
| 31 | 31 | 0.479 |
| 32 | 32 | 0.711 |
| 33 | 33 | 0.842 |
| 34 | 34 | 0.858 |
| 35 | 35 | 0.022 |
| 36 | 36 | 0.743 |
| 37 | 37 | 0.893 |
| 38 | 38 | 0.717 |
| 39 | 39 | 0.149 |
| 4 | 4 | 0.553 |
| 40 | 40 | 0.656 |
| 41 | 41 | 0.852 |
| 42 | 42 | 0.728 |
| 43 | 43 | 0.0831 |
| 44 | 44 | 0.0371 |
| 45 | 45 | 0.841 |
| 46 | 46 | 0.985 |
| 47 | 47 | 0.825 |
| 48 | 48 | 0.922 |
| 49 | 49 | 0.0216 |
| 5 | 5 | 0.556 |
| 50 | 50 | 0.927 |
| 51 | 51 | 0.869 |
| 52 | 52 | 0.368 |
| 53 | 53 | 0.0326 |
| 54 | 54 | 0.608 |
| 55 | 55 | 0.267 |
| 56 | 56 | 0.785 |
| 57 | 57 | 0.867 |
| 58 | 58 | 0.12 |
| 59 | 59 | 0.449 |
| 6 | 6 | 0.281 |
| 60 | 60 | 0.171 |
| 61 | 61 | 0.652 |
| 62 | 62 | 0.212 |
| 63 | 63 | 0.859 |
| 64 | 64 | 0.437 |
| 65 | 65 | 0.725 |
| 66 | 66 | 0.363 |
| 67 | 67 | 0.73 |
| 68 | 68 | 0.338 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.295 |
| 70 | 70 | 0.0203 |
| 71 | 71 | 0.236 |
| 72 | 72 | 0.735 |
| 73 | 73 | 0.0628 |
| 74 | 74 | 0.819 |
| 75 | 75 | 0.239 |
| 76 | 76 | 0.17 |
| 77 | 77 | 0.617 |
| 78 | 78 | 0.834 |
| 79 | 79 | 0.334 |
| 8 | 8 | 0.446 |
| 80 | 80 | 0.432 |
| 81 | 81 | 0.422 |
| 82 | 82 | 0.136 |
| 83 | 83 | 0.555 |
| 84 | 84 | 0.00651 |
| 85 | 85 | 0.185 |
| 86 | 86 | 0.396 |
| 87 | 87 | 0.646 |
| 88 | 88 | 0.38 |
| 89 | 89 | 0.916 |
| 9 | 9 | 0.89 |
| 90 | 90 | 0.103 |
| 91 | 91 | 0.597 |
| 92 | 92 | 0.504 |
| 93 | 93 | 0.428 |
| 94 | 94 | 0.623 |
| 95 | 95 | 0.996 |
| 96 | 96 | 0.581 |
| 97 | 97 | 0.591 |
| 98 | 98 | 0.184 |
| 99 | 99 | 0.00597 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12624
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
