FF:10034-101E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005014 | ||
|accession_numbers=CAGE;DRX008702;DRR009574;DRZ000999;DRZ002384;DRZ012349;DRZ013734 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010034 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520pool1.CNhs10641.10034-101E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10034-101E7 | |id=FF:10034-101E7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010034 | ||
|is_obsolete= | |||
|library_id=CNhs10641 | |||
|library_id_phase_based=2:CNhs10641 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10034 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10034 | |||
|name=parietal lobe, adult, pool1 | |name=parietal lobe, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10641,LSID658,release008,COMPLETED | |profile_hcage=CNhs10641,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636571 | |rna_catalog_number=Cat:636571 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+09 | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.83950289782376e-295!GO:0005737;cytoplasm;5.46378208702886e-160!GO:0044444;cytoplasmic part;1.97208198089716e-105!GO:0043226;organelle;2.24112494678594e-88!GO:0043229;intracellular organelle;7.34130287112965e-88!GO:0043227;membrane-bound organelle;4.14945110183715e-82!GO:0043231;intracellular membrane-bound organelle;5.79501426219345e-82!GO:0005515;protein binding;1.95750188247447e-63!GO:0044422;organelle part;8.94119129659509e-61!GO:0044446;intracellular organelle part;7.84692857290365e-60!GO:0032991;macromolecular complex;1.19806827550971e-54!GO:0016043;cellular component organization and biogenesis;4.31604018191292e-44!GO:0005739;mitochondrion;9.33068511075291e-42!GO:0031090;organelle membrane;2.84528312234905e-40!GO:0033036;macromolecule localization;9.09523439438236e-40!GO:0015031;protein transport;1.20838430045795e-39!GO:0008104;protein localization;1.18588825344009e-36!GO:0045184;establishment of protein localization;6.94192123699643e-36!GO:0030529;ribonucleoprotein complex;1.09112282964647e-33!GO:0003723;RNA binding;4.27615245176269e-33!GO:0043234;protein complex;1.0879519433853e-31!GO:0044429;mitochondrial part;1.29583336593669e-31!GO:0046907;intracellular transport;3.89656015158512e-31!GO:0051649;establishment of cellular localization;4.87522272061027e-29!GO:0051641;cellular localization;6.9715555418293e-29!GO:0016192;vesicle-mediated transport;4.98403873473386e-28!GO:0043233;organelle lumen;7.73246658212734e-28!GO:0031974;membrane-enclosed lumen;7.73246658212734e-28!GO:0031975;envelope;1.87259367485455e-26!GO:0031967;organelle envelope;2.73500432728142e-26!GO:0019538;protein metabolic process;6.25678884499321e-25!GO:0044428;nuclear part;2.59744781669123e-24!GO:0006886;intracellular protein transport;6.89212029195987e-23!GO:0005740;mitochondrial envelope;6.51976292911396e-22!GO:0005829;cytosol;1.6357792837424e-21!GO:0044260;cellular macromolecule metabolic process;1.74823723541522e-21!GO:0005794;Golgi apparatus;1.74823723541522e-21!GO:0044238;primary metabolic process;1.81433657293383e-21!GO:0031966;mitochondrial membrane;1.87463410285134e-21!GO:0006119;oxidative phosphorylation;4.44807995164183e-21!GO:0016071;mRNA metabolic process;4.68427498113035e-21!GO:0031982;vesicle;5.34109254159376e-21!GO:0044267;cellular protein metabolic process;6.51890231374419e-21!GO:0031410;cytoplasmic vesicle;3.3495717866893e-20!GO:0031988;membrane-bound vesicle;5.90837052130377e-20!GO:0006396;RNA processing;1.33146115868882e-19!GO:0044237;cellular metabolic process;1.50898611647245e-19!GO:0016023;cytoplasmic membrane-bound vesicle;2.79271967453704e-19!GO:0005840;ribosome;5.74330720276926e-19!GO:0008380;RNA splicing;9.41359111533572e-19!GO:0043170;macromolecule metabolic process;1.23357460818043e-18!GO:0019866;organelle inner membrane;1.41844255711547e-18!GO:0005743;mitochondrial inner membrane;3.31688910015994e-18!GO:0006996;organelle organization and biogenesis;1.31206202664156e-17!GO:0006397;mRNA processing;1.78269325228502e-17!GO:0000166;nucleotide binding;3.83383934150536e-16!GO:0006512;ubiquitin cycle;5.24707993335453e-16!GO:0065003;macromolecular complex assembly;6.73438574788207e-16!GO:0009058;biosynthetic process;1.67462782918748e-15!GO:0012505;endomembrane system;1.7794839366006e-15!GO:0006412;translation;2.35281758316194e-15!GO:0043412;biopolymer modification;4.84519623008797e-15!GO:0044455;mitochondrial membrane part;6.02604549974511e-15!GO:0003735;structural constituent of ribosome;6.42002795126529e-15!GO:0031981;nuclear lumen;1.04240388629903e-14!GO:0005746;mitochondrial respiratory chain;1.32787030284355e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.75125996428225e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;2.09178564739435e-14!GO:0006464;protein modification process;2.09178564739435e-14!GO:0016462;pyrophosphatase activity;2.32737643743324e-14!GO:0005634;nucleus;2.71623237346184e-14!GO:0022607;cellular component assembly;3.00078022585275e-14!GO:0006810;transport;4.39870815635065e-14!GO:0043687;post-translational protein modification;5.14849094880815e-14!GO:0016874;ligase activity;8.57524745439663e-14!GO:0045045;secretory pathway;1.46584120677251e-13!GO:0017111;nucleoside-triphosphatase activity;1.51456058740065e-13!GO:0048770;pigment granule;2.16298210470542e-13!GO:0042470;melanosome;2.16298210470542e-13!GO:0007264;small GTPase mediated signal transduction;2.38915505946161e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.86113940664353e-13!GO:0003954;NADH dehydrogenase activity;2.86113940664353e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.86113940664353e-13!GO:0030135;coated vesicle;4.41643648898339e-13!GO:0032553;ribonucleotide binding;6.40897851372412e-13!GO:0032555;purine ribonucleotide binding;6.40897851372412e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68215901470583e-13!GO:0005681;spliceosome;1.35407668957818e-12!GO:0009059;macromolecule biosynthetic process;5.03544885116018e-12!GO:0006457;protein folding;5.03544885116018e-12!GO:0033279;ribosomal subunit;5.26640059207436e-12!GO:0044249;cellular biosynthetic process;5.71205160097957e-12!GO:0017076;purine nucleotide binding;5.73375187688229e-12!GO:0048193;Golgi vesicle transport;5.82181420126115e-12!GO:0031980;mitochondrial lumen;5.89880616553827e-12!GO:0005759;mitochondrial matrix;5.89880616553827e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.62596227553476e-11!GO:0042773;ATP synthesis coupled electron transport;1.62596227553476e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.63055479052968e-11!GO:0045271;respiratory chain complex I;1.63055479052968e-11!GO:0005747;mitochondrial respiratory chain complex I;1.63055479052968e-11!GO:0008092;cytoskeletal protein binding;1.83978936640197e-11!GO:0051234;establishment of localization;2.66672490012344e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.86754299571304e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.92654208704463e-11!GO:0030695;GTPase regulator activity;5.5174134015012e-11!GO:0007399;nervous system development;5.67169873780592e-11!GO:0051179;localization;5.82684080860269e-11!GO:0019829;cation-transporting ATPase activity;8.91918767704088e-11!GO:0044431;Golgi apparatus part;1.1196998020308e-10!GO:0005768;endosome;1.12375870325348e-10!GO:0005083;small GTPase regulator activity;1.51869919558118e-10!GO:0043005;neuron projection;1.52543591095543e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.77031913771849e-10!GO:0006793;phosphorus metabolic process;1.95904915705751e-10!GO:0006796;phosphate metabolic process;1.95904915705751e-10!GO:0043283;biopolymer metabolic process;2.59482515104568e-10!GO:0005783;endoplasmic reticulum;2.78033802034729e-10!GO:0022618;protein-RNA complex assembly;4.87122158259117e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;7.62109524560744e-10!GO:0003924;GTPase activity;8.01470368155032e-10!GO:0006511;ubiquitin-dependent protein catabolic process;9.09434504822142e-10!GO:0005654;nucleoplasm;1.2241511815387e-09!GO:0051082;unfolded protein binding;1.29601174110377e-09!GO:0019941;modification-dependent protein catabolic process;1.30332354678782e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.30332354678782e-09!GO:0006605;protein targeting;1.45916400127783e-09!GO:0044257;cellular protein catabolic process;1.70409638309905e-09!GO:0008135;translation factor activity, nucleic acid binding;2.07289644139605e-09!GO:0030136;clathrin-coated vesicle;2.15625611075701e-09!GO:0008565;protein transporter activity;2.51088049831518e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.9711628459704e-09!GO:0008639;small protein conjugating enzyme activity;3.41569431383127e-09!GO:0032940;secretion by cell;3.90346144545101e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.44513967528517e-09!GO:0044445;cytosolic part;4.78365201902311e-09!GO:0044265;cellular macromolecule catabolic process;6.03723678976287e-09!GO:0004842;ubiquitin-protein ligase activity;6.16845547644491e-09!GO:0019787;small conjugating protein ligase activity;6.86456919997242e-09!GO:0005525;GTP binding;6.86456919997242e-09!GO:0044451;nucleoplasm part;7.14222310678398e-09!GO:0007010;cytoskeleton organization and biogenesis;8.4231343956156e-09!GO:0016044;membrane organization and biogenesis;8.43189759649693e-09!GO:0051186;cofactor metabolic process;8.48239614707457e-09!GO:0015986;ATP synthesis coupled proton transport;8.5172624893259e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.5172624893259e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.38392657785497e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.24890101805027e-08!GO:0000139;Golgi membrane;3.31565658346008e-08!GO:0006461;protein complex assembly;3.66293048421213e-08!GO:0008134;transcription factor binding;3.91731718034422e-08!GO:0044248;cellular catabolic process;4.76078726139136e-08!GO:0030163;protein catabolic process;7.35277528224602e-08!GO:0043228;non-membrane-bound organelle;8.65576464265853e-08!GO:0043232;intracellular non-membrane-bound organelle;8.65576464265853e-08!GO:0016881;acid-amino acid ligase activity;9.40820019014757e-08!GO:0043285;biopolymer catabolic process;9.64415722278359e-08!GO:0009060;aerobic respiration;9.64415722278359e-08!GO:0032559;adenyl ribonucleotide binding;1.3537452457909e-07!GO:0046034;ATP metabolic process;1.39109805227166e-07!GO:0045333;cellular respiration;1.45902003509076e-07!GO:0015631;tubulin binding;1.6505280763871e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.38306229979017e-07!GO:0048475;coated membrane;2.38306229979017e-07!GO:0030117;membrane coat;2.38306229979017e-07!GO:0032561;guanyl ribonucleotide binding;2.38345170788085e-07!GO:0019001;guanyl nucleotide binding;2.38345170788085e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.88395688365065e-07!GO:0015935;small ribosomal subunit;2.95987821642744e-07!GO:0016310;phosphorylation;3.14494866324394e-07!GO:0007242;intracellular signaling cascade;3.82210113056629e-07!GO:0044440;endosomal part;3.82210113056629e-07!GO:0010008;endosome membrane;3.82210113056629e-07!GO:0006163;purine nucleotide metabolic process;4.27710456090991e-07!GO:0009141;nucleoside triphosphate metabolic process;4.36105004210529e-07!GO:0005524;ATP binding;5.02611768455304e-07!GO:0019717;synaptosome;5.32158037599325e-07!GO:0006754;ATP biosynthetic process;5.32158037599325e-07!GO:0006753;nucleoside phosphate metabolic process;5.32158037599325e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.35055324417625e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.35055324417625e-07!GO:0009057;macromolecule catabolic process;5.56805225288396e-07!GO:0048471;perinuclear region of cytoplasm;5.57076536158493e-07!GO:0009150;purine ribonucleotide metabolic process;5.74947533928284e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.80062708172508e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.53177570052988e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.62120553363123e-07!GO:0006446;regulation of translational initiation;6.81950813575159e-07!GO:0006413;translational initiation;6.81950813575159e-07!GO:0030554;adenyl nucleotide binding;8.76770817141638e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.18021588001309e-07!GO:0030029;actin filament-based process;9.88462690200276e-07!GO:0006164;purine nucleotide biosynthetic process;9.9232615413435e-07!GO:0003743;translation initiation factor activity;1.0344332926039e-06!GO:0005905;coated pit;1.03835326017137e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.10225181205613e-06!GO:0008287;protein serine/threonine phosphatase complex;1.1088487926624e-06!GO:0006732;coenzyme metabolic process;1.222866108533e-06!GO:0007265;Ras protein signal transduction;1.26937218821178e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.30064563718663e-06!GO:0009259;ribonucleotide metabolic process;1.35092699645799e-06!GO:0030425;dendrite;1.89974213689112e-06!GO:0006099;tricarboxylic acid cycle;1.9611684677083e-06!GO:0046356;acetyl-CoA catabolic process;1.9611684677083e-06!GO:0044432;endoplasmic reticulum part;2.18855315495127e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;2.27436910530059e-06!GO:0000375;RNA splicing, via transesterification reactions;2.27436910530059e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.27436910530059e-06!GO:0006913;nucleocytoplasmic transport;2.62636935750165e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.65479274470205e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.65479274470205e-06!GO:0031965;nuclear membrane;2.7967130724107e-06!GO:0016604;nuclear body;3.17559280664866e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.37289646417274e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.37289646417274e-06!GO:0051056;regulation of small GTPase mediated signal transduction;3.63265021390972e-06!GO:0005761;mitochondrial ribosome;3.63265021390972e-06!GO:0000313;organellar ribosome;3.63265021390972e-06!GO:0019226;transmission of nerve impulse;3.64347181081828e-06!GO:0019899;enzyme binding;3.68515708538167e-06!GO:0051169;nuclear transport;3.80256962061503e-06!GO:0003779;actin binding;4.24983035256056e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.56470852021252e-06!GO:0008021;synaptic vesicle;4.66057909621743e-06!GO:0005798;Golgi-associated vesicle;4.66767996324123e-06!GO:0015630;microtubule cytoskeleton;4.97846844112391e-06!GO:0005770;late endosome;5.29320053252782e-06!GO:0016607;nuclear speck;5.68154266356088e-06!GO:0009109;coenzyme catabolic process;5.99308033315497e-06!GO:0009260;ribonucleotide biosynthetic process;6.34208102936767e-06!GO:0006897;endocytosis;6.5926467115005e-06!GO:0010324;membrane invagination;6.5926467115005e-06!GO:0006084;acetyl-CoA metabolic process;7.16668918057327e-06!GO:0009055;electron carrier activity;7.38595411923551e-06!GO:0010467;gene expression;8.40557622963142e-06!GO:0031252;leading edge;1.00623139480286e-05!GO:0005635;nuclear envelope;1.10304617296221e-05!GO:0030120;vesicle coat;1.15050868095791e-05!GO:0030662;coated vesicle membrane;1.15050868095791e-05!GO:0045259;proton-transporting ATP synthase complex;1.2445477567375e-05!GO:0015934;large ribosomal subunit;1.45839537664232e-05!GO:0005769;early endosome;1.63076005597705e-05!GO:0042623;ATPase activity, coupled;1.69768203627669e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.7207697595851e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.45677089623979e-05!GO:0005874;microtubule;2.46946914203665e-05!GO:0016887;ATPase activity;2.49335715191619e-05!GO:0005789;endoplasmic reticulum membrane;2.59321111893851e-05!GO:0051187;cofactor catabolic process;3.00735933046099e-05!GO:0008047;enzyme activator activity;3.70128854259267e-05!GO:0032446;protein modification by small protein conjugation;4.18739230410336e-05!GO:0005096;GTPase activator activity;5.39385933419579e-05!GO:0030133;transport vesicle;5.49023214943467e-05!GO:0008654;phospholipid biosynthetic process;5.50290692784174e-05!GO:0016567;protein ubiquitination;5.50290692784174e-05!GO:0005773;vacuole;6.51983715172823e-05!GO:0008017;microtubule binding;6.65421139086619e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.96492703223376e-05!GO:0015399;primary active transmembrane transporter activity;6.96492703223376e-05!GO:0005730;nucleolus;9.01867078054124e-05!GO:0017038;protein import;9.09955220973617e-05!GO:0046467;membrane lipid biosynthetic process;0.000104529331746678!GO:0051128;regulation of cellular component organization and biogenesis;0.000106798855321329!GO:0016311;dephosphorylation;0.000119443408427991!GO:0048489;synaptic vesicle transport;0.000126771125645825!GO:0005085;guanyl-nucleotide exchange factor activity;0.000131198930933834!GO:0043492;ATPase activity, coupled to movement of substances;0.000132737715059423!GO:0006650;glycerophospholipid metabolic process;0.000136776223359482!GO:0009056;catabolic process;0.000141763300758621!GO:0016301;kinase activity;0.000145814586321904!GO:0006888;ER to Golgi vesicle-mediated transport;0.000148545588200537!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.00015329469929878!GO:0046578;regulation of Ras protein signal transduction;0.000159290506744352!GO:0004721;phosphoprotein phosphatase activity;0.000167665136952949!GO:0003712;transcription cofactor activity;0.000172850531422466!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000178664583800192!GO:0030118;clathrin coat;0.00018358284990378!GO:0007268;synaptic transmission;0.000206987521101772!GO:0000902;cell morphogenesis;0.00022337604621023!GO:0032989;cellular structure morphogenesis;0.00022337604621023!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000230147511755376!GO:0006643;membrane lipid metabolic process;0.000239034362280216!GO:0006613;cotranslational protein targeting to membrane;0.000253240651880375!GO:0016791;phosphoric monoester hydrolase activity;0.000254776023185321!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000306916595878251!GO:0048523;negative regulation of cellular process;0.000320366259351307!GO:0051188;cofactor biosynthetic process;0.000327405194297311!GO:0051246;regulation of protein metabolic process;0.000354840659828844!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000358706790068293!GO:0000151;ubiquitin ligase complex;0.000374241036847051!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000378190089367193!GO:0006470;protein amino acid dephosphorylation;0.000379363271268801!GO:0015980;energy derivation by oxidation of organic compounds;0.000382125592369398!GO:0007269;neurotransmitter secretion;0.000394996769735583!GO:0005643;nuclear pore;0.000414674667696383!GO:0005793;ER-Golgi intermediate compartment;0.00043178855453746!GO:0030027;lamellipodium;0.000443680578224246!GO:0005741;mitochondrial outer membrane;0.000476597236446735!GO:0006752;group transfer coenzyme metabolic process;0.000487985277116444!GO:0044453;nuclear membrane part;0.000493834039909679!GO:0006403;RNA localization;0.000506546260231873!GO:0016568;chromatin modification;0.000515878178226668!GO:0019902;phosphatase binding;0.000564560988763276!GO:0007019;microtubule depolymerization;0.000566457817835597!GO:0030384;phosphoinositide metabolic process;0.000617123460941309!GO:0050657;nucleic acid transport;0.000620978558711274!GO:0051236;establishment of RNA localization;0.000620978558711274!GO:0050658;RNA transport;0.000620978558711274!GO:0019208;phosphatase regulator activity;0.000698228980238327!GO:0000159;protein phosphatase type 2A complex;0.000702798521043723!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000719726024680729!GO:0031072;heat shock protein binding;0.000732253641062786!GO:0016740;transferase activity;0.000735462669334406!GO:0000245;spliceosome assembly;0.000738127341191533!GO:0000323;lytic vacuole;0.000781044911547466!GO:0005764;lysosome;0.000781044911547466!GO:0016197;endosome transport;0.000806835223230992!GO:0004674;protein serine/threonine kinase activity;0.000829300917575127!GO:0008601;protein phosphatase type 2A regulator activity;0.00103703459998676!GO:0019867;outer membrane;0.00104113635227876!GO:0007266;Rho protein signal transduction;0.00105630593850814!GO:0031968;organelle outer membrane;0.00107302266841034!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107773263588162!GO:0045055;regulated secretory pathway;0.00108989620000828!GO:0030054;cell junction;0.0011246465181181!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00114367175246756!GO:0004722;protein serine/threonine phosphatase activity;0.00118676629479297!GO:0045786;negative regulation of progression through cell cycle;0.00122546868402901!GO:0043623;cellular protein complex assembly;0.00127720961385482!GO:0005516;calmodulin binding;0.00133132007103422!GO:0003729;mRNA binding;0.00136266500987267!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00145514624310091!GO:0030427;site of polarized growth;0.00154862254883907!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0015487882377043!GO:0030424;axon;0.00155647911761264!GO:0001505;regulation of neurotransmitter levels;0.00157100784472337!GO:0050767;regulation of neurogenesis;0.00162424096874362!GO:0030426;growth cone;0.00163118717527026!GO:0046488;phosphatidylinositol metabolic process;0.00184613742617064!GO:0009108;coenzyme biosynthetic process;0.00188910288685753!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00195981336614009!GO:0031114;regulation of microtubule depolymerization;0.00195981336614009!GO:0007026;negative regulation of microtubule depolymerization;0.00195981336614009!GO:0048487;beta-tubulin binding;0.00196235827431932!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00196535292096859!GO:0006891;intra-Golgi vesicle-mediated transport;0.00198346807529256!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00199630195442884!GO:0005938;cell cortex;0.00203542066369408!GO:0031902;late endosome membrane;0.00203838643681219!GO:0009966;regulation of signal transduction;0.0020788440810194!GO:0048167;regulation of synaptic plasticity;0.0020788440810194!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00211907809009137!GO:0043209;myelin sheath;0.00218346111345845!GO:0019888;protein phosphatase regulator activity;0.00219517370360418!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00222488991846512!GO:0004812;aminoacyl-tRNA ligase activity;0.00222488991846512!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00222488991846512!GO:0012506;vesicle membrane;0.00227285769346532!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00256550208193799!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00256550208193799!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00256550208193799!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00260262042042213!GO:0048519;negative regulation of biological process;0.00260526929160856!GO:0016050;vesicle organization and biogenesis;0.00264590243595053!GO:0005875;microtubule associated complex;0.00271251569874056!GO:0016126;sterol biosynthetic process;0.00288612299875346!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00303142135976769!GO:0003724;RNA helicase activity;0.00303956144437036!GO:0030660;Golgi-associated vesicle membrane;0.00308087598429542!GO:0051087;chaperone binding;0.00308087598429542!GO:0006904;vesicle docking during exocytosis;0.0031174038492907!GO:0005869;dynactin complex;0.00312954953914281!GO:0006606;protein import into nucleus;0.00317497245094504!GO:0005774;vacuolar membrane;0.00325109878331433!GO:0043038;amino acid activation;0.00332843039603459!GO:0006418;tRNA aminoacylation for protein translation;0.00332843039603459!GO:0043039;tRNA aminoacylation;0.00332843039603459!GO:0022406;membrane docking;0.00336554376900677!GO:0048278;vesicle docking;0.00336554376900677!GO:0006612;protein targeting to membrane;0.003379079640832!GO:0051170;nuclear import;0.00339807680165324!GO:0008026;ATP-dependent helicase activity;0.00350033435750088!GO:0032011;ARF protein signal transduction;0.0036393989812166!GO:0032012;regulation of ARF protein signal transduction;0.0036393989812166!GO:0009117;nucleotide metabolic process;0.0036393989812166!GO:0042578;phosphoric ester hydrolase activity;0.00377482169579188!GO:0006665;sphingolipid metabolic process;0.00379856529697519!GO:0008154;actin polymerization and/or depolymerization;0.00383749054447185!GO:0007272;ensheathment of neurons;0.00383749054447185!GO:0008366;axon ensheathment;0.00383749054447185!GO:0006892;post-Golgi vesicle-mediated transport;0.00384497282329417!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00386410626072616!GO:0004667;prostaglandin-D synthase activity;0.00386410626072616!GO:0050802;circadian sleep/wake cycle, sleep;0.00386410626072616!GO:0022410;circadian sleep/wake cycle process;0.00386410626072616!GO:0042749;regulation of circadian sleep/wake cycle;0.00386410626072616!GO:0008610;lipid biosynthetic process;0.0038801713295809!GO:0016564;transcription repressor activity;0.0038801713295809!GO:0006644;phospholipid metabolic process;0.00389347107761587!GO:0003697;single-stranded DNA binding;0.00392515449566596!GO:0048699;generation of neurons;0.00419463722727657!GO:0043566;structure-specific DNA binding;0.00443673732035368!GO:0030658;transport vesicle membrane;0.00452665974497755!GO:0044433;cytoplasmic vesicle part;0.00464566307608099!GO:0005048;signal sequence binding;0.00470390320614664!GO:0050803;regulation of synapse structure and activity;0.0047869712744107!GO:0006323;DNA packaging;0.00487417731472434!GO:0065002;intracellular protein transport across a membrane;0.00506282677723376!GO:0022008;neurogenesis;0.00532140002694483!GO:0015629;actin cytoskeleton;0.0053498481826084!GO:0046474;glycerophospholipid biosynthetic process;0.00545890921064881!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00550114529034517!GO:0055083;monovalent inorganic anion homeostasis;0.00550114529034517!GO:0055064;chloride ion homeostasis;0.00550114529034517!GO:0030644;cellular chloride ion homeostasis;0.00550114529034517!GO:0019903;protein phosphatase binding;0.0056422682076862!GO:0043087;regulation of GTPase activity;0.00584411039673234!GO:0051168;nuclear export;0.00584411039673234!GO:0051028;mRNA transport;0.00599381905832649!GO:0030258;lipid modification;0.00610668202166365!GO:0001508;regulation of action potential;0.00611909047096645!GO:0031901;early endosome membrane;0.00611909047096645!GO:0051427;hormone receptor binding;0.00699026788833641!GO:0030182;neuron differentiation;0.00701486365909808!GO:0050839;cell adhesion molecule binding;0.00709807992959632!GO:0051261;protein depolymerization;0.00715356611745128!GO:0003714;transcription corepressor activity;0.00715356611745128!GO:0050811;GABA receptor binding;0.00718589946473296!GO:0005099;Ras GTPase activator activity;0.00726281794045117!GO:0044448;cell cortex part;0.00733425666947771!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00821011909041397!GO:0019198;transmembrane receptor protein phosphatase activity;0.00821011909041397!GO:0030867;rough endoplasmic reticulum membrane;0.00861552520801795!GO:0006414;translational elongation;0.00861552520801795!GO:0006607;NLS-bearing substrate import into nucleus;0.00866779062492612!GO:0030132;clathrin coat of coated pit;0.00869498265456205!GO:0051920;peroxiredoxin activity;0.00872020487206072!GO:0000287;magnesium ion binding;0.00890439290969872!GO:0007017;microtubule-based process;0.00914668573065216!GO:0001578;microtubule bundle formation;0.0100015478654693!GO:0005765;lysosomal membrane;0.0100497059149149!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0100749251897777!GO:0019887;protein kinase regulator activity;0.0106400494460771!GO:0031109;microtubule polymerization or depolymerization;0.010658188522193!GO:0051540;metal cluster binding;0.0110364060943957!GO:0051536;iron-sulfur cluster binding;0.0110364060943957!GO:0005791;rough endoplasmic reticulum;0.0110364060943957!GO:0048500;signal recognition particle;0.0112996640574345!GO:0030137;COPI-coated vesicle;0.0113995702935096!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0117682329499571!GO:0035257;nuclear hormone receptor binding;0.0118100789427894!GO:0043021;ribonucleoprotein binding;0.0119246066862325!GO:0005839;proteasome core complex (sensu Eukaryota);0.0120204799228754!GO:0044437;vacuolar part;0.0121353792248431!GO:0004386;helicase activity;0.0122203422603717!GO:0003746;translation elongation factor activity;0.0123696914266613!GO:0006695;cholesterol biosynthetic process;0.0128854157806531!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0128879854338541!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0128879854338541!GO:0030659;cytoplasmic vesicle membrane;0.0130621497388512!GO:0030125;clathrin vesicle coat;0.0140416776549282!GO:0030665;clathrin coated vesicle membrane;0.0140416776549282!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0140945790641418!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.014571220970047!GO:0030532;small nuclear ribonucleoprotein complex;0.0146259219122953!GO:0044456;synapse part;0.0151421962484695!GO:0030041;actin filament polymerization;0.0152197562320428!GO:0035035;histone acetyltransferase binding;0.0160442841114985!GO:0007034;vacuolar transport;0.016141432781253!GO:0019904;protein domain specific binding;0.0161456013384263!GO:0008250;oligosaccharyl transferase complex;0.016263270491327!GO:0006402;mRNA catabolic process;0.0163347147801378!GO:0001726;ruffle;0.0164450625868118!GO:0006916;anti-apoptosis;0.016596867054542!GO:0033673;negative regulation of kinase activity;0.0166089382961946!GO:0006469;negative regulation of protein kinase activity;0.0166089382961946!GO:0003713;transcription coactivator activity;0.016703296387639!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0167655251110875!GO:0009165;nucleotide biosynthetic process;0.0170127616787264!GO:0006818;hydrogen transport;0.0170369951330946!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0171033816307232!GO:0005092;GDP-dissociation inhibitor activity;0.0171327383407301!GO:0000314;organellar small ribosomal subunit;0.017192017854468!GO:0005763;mitochondrial small ribosomal subunit;0.017192017854468!GO:0008186;RNA-dependent ATPase activity;0.0174832669119558!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0176889105076312!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0177008695376778!GO:0051287;NAD binding;0.0177235755950845!GO:0030742;GTP-dependent protein binding;0.0178777490450101!GO:0042995;cell projection;0.0179660134932674!GO:0046930;pore complex;0.0182516784373278!GO:0046489;phosphoinositide biosynthetic process;0.0189796013156605!GO:0046839;phospholipid dephosphorylation;0.0196167472172152!GO:0030119;AP-type membrane coat adaptor complex;0.0199919824419825!GO:0008139;nuclear localization sequence binding;0.0202321998728906!GO:0048666;neuron development;0.0202485159479771!GO:0030030;cell projection organization and biogenesis;0.0202485159479771!GO:0048858;cell projection morphogenesis;0.0202485159479771!GO:0032990;cell part morphogenesis;0.0202485159479771!GO:0008180;signalosome;0.0203771552304732!GO:0006672;ceramide metabolic process;0.0206116623050519!GO:0042254;ribosome biogenesis and assembly;0.0206119844665824!GO:0008286;insulin receptor signaling pathway;0.0207550135274829!GO:0045296;cadherin binding;0.0209123258249108!GO:0043407;negative regulation of MAP kinase activity;0.0209493398532692!GO:0009892;negative regulation of metabolic process;0.0209493398532692!GO:0005813;centrosome;0.0215425279614615!GO:0005100;Rho GTPase activator activity;0.0217165202796952!GO:0007611;learning and/or memory;0.0221959840032946!GO:0006661;phosphatidylinositol biosynthetic process;0.0227080071688949!GO:0000904;cellular morphogenesis during differentiation;0.0227877389940846!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0230532053649161!GO:0000059;protein import into nucleus, docking;0.0232159322475011!GO:0005868;cytoplasmic dynein complex;0.023356857089231!GO:0015992;proton transport;0.0233653126680125!GO:0006887;exocytosis;0.0234506891888793!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0234506891888793!GO:0035258;steroid hormone receptor binding;0.023646394884075!GO:0030131;clathrin adaptor complex;0.0236889240846738!GO:0004672;protein kinase activity;0.0239489540203203!GO:0019207;kinase regulator activity;0.0242030218323183!GO:0035023;regulation of Rho protein signal transduction;0.024236110995931!GO:0019894;kinesin binding;0.0247165747718579!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0247165747718579!GO:0045047;protein targeting to ER;0.0247165747718579!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.024728727168725!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0249182070388444!GO:0008219;cell death;0.0250122992607044!GO:0016265;death;0.0250122992607044!GO:0046519;sphingoid metabolic process;0.0250367993460633!GO:0005885;Arp2/3 protein complex;0.0252184270904915!GO:0000062;acyl-CoA binding;0.0254464615352401!GO:0051348;negative regulation of transferase activity;0.0256223958992019!GO:0006595;polyamine metabolic process;0.0257539433696802!GO:0048667;neuron morphogenesis during differentiation;0.0257539433696802!GO:0048812;neurite morphogenesis;0.0257539433696802!GO:0031124;mRNA 3'-end processing;0.0259669730516294!GO:0006366;transcription from RNA polymerase II promoter;0.0260362410222939!GO:0043681;protein import into mitochondrion;0.0264411864366213!GO:0031371;ubiquitin conjugating enzyme complex;0.0266896751932716!GO:0048168;regulation of neuronal synaptic plasticity;0.0267591036903343!GO:0008088;axon cargo transport;0.0268944420718215!GO:0016579;protein deubiquitination;0.0270028581048211!GO:0043025;cell soma;0.0280232985079618!GO:0031301;integral to organelle membrane;0.0283007364728463!GO:0004683;calmodulin-dependent protein kinase activity;0.0283007364728463!GO:0051252;regulation of RNA metabolic process;0.0287735540468847!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0291035736042676!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0295921722249171!GO:0006259;DNA metabolic process;0.0297248238778044!GO:0042552;myelination;0.0298508878830543!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0299304468379616!GO:0000209;protein polyubiquitination;0.0305719131082999!GO:0004298;threonine endopeptidase activity;0.0313478279399193!GO:0008361;regulation of cell size;0.0314480395028551!GO:0016079;synaptic vesicle exocytosis;0.0315163753286397!GO:0031175;neurite development;0.0320665108516068!GO:0005952;cAMP-dependent protein kinase complex;0.0332433578336949!GO:0042670;retinal cone cell differentiation;0.0337015489956666!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0337015489956666!GO:0046549;retinal cone cell development;0.0337015489956666!GO:0043069;negative regulation of programmed cell death;0.0337406433162224!GO:0048468;cell development;0.0341589365744451!GO:0051726;regulation of cell cycle;0.034631293702152!GO:0008090;retrograde axon cargo transport;0.034631293702152!GO:0033596;TSC1-TSC2 complex;0.034631293702152!GO:0033693;neurofilament bundle assembly;0.034631293702152!GO:0000096;sulfur amino acid metabolic process;0.0347835999170482!GO:0009066;aspartate family amino acid metabolic process;0.0347835999170482!GO:0019911;structural constituent of myelin sheath;0.0352135274462139!GO:0006611;protein export from nucleus;0.0354956057627146!GO:0051539;4 iron, 4 sulfur cluster binding;0.0360914026031899!GO:0008312;7S RNA binding;0.0372159643024803!GO:0043066;negative regulation of apoptosis;0.0376372536935934!GO:0043488;regulation of mRNA stability;0.0378788737138964!GO:0043487;regulation of RNA stability;0.0378788737138964!GO:0004004;ATP-dependent RNA helicase activity;0.0381607275363637!GO:0012501;programmed cell death;0.0381945756888978!GO:0030663;COPI coated vesicle membrane;0.0383902298331739!GO:0030126;COPI vesicle coat;0.0383902298331739!GO:0065009;regulation of a molecular function;0.0386462811954743!GO:0019783;small conjugating protein-specific protease activity;0.0389223329408649!GO:0008022;protein C-terminus binding;0.0396188101634222!GO:0007041;lysosomal transport;0.0396188101634222!GO:0006915;apoptosis;0.0399488275072322!GO:0016859;cis-trans isomerase activity;0.041237621449011!GO:0033130;acetylcholine receptor binding;0.041983202901317!GO:0004576;oligosaccharyl transferase activity;0.0424309984104926!GO:0005815;microtubule organizing center;0.0424309984104926!GO:0003711;transcription elongation regulator activity;0.0431599934344478!GO:0030911;TPR domain binding;0.0434673443530936!GO:0007005;mitochondrion organization and biogenesis;0.0437020860721663!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0449996458218424!GO:0000188;inactivation of MAPK activity;0.0452962958816748!GO:0030140;trans-Golgi network transport vesicle;0.0453082218953459!GO:0032318;regulation of Ras GTPase activity;0.0469779201738996!GO:0016049;cell growth;0.0470527117934819!GO:0016615;malate dehydrogenase activity;0.0470566793253842!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0474777861315712!GO:0033043;regulation of organelle organization and biogenesis;0.0474777861315712!GO:0016363;nuclear matrix;0.0477502844131921!GO:0042802;identical protein binding;0.047819507632036!GO:0004843;ubiquitin-specific protease activity;0.0483948131669707!GO:0000074;regulation of progression through cell cycle;0.0490759368709899 | |||
|sample_id=10034 | |sample_id=10034 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=parietal lobe | |sample_tissue=parietal lobe | ||
|top_motifs=REST:4.41168678832;NHLH1,2:4.25517519604;EGR1..3:3.92876270155;ZFP161:3.76169358698;MYFfamily:3.60437100948;MTE{core}:3.53849757977;PRRX1,2:3.51326076347;ATF2:3.49812436554;AHR_ARNT_ARNT2:3.48592004178;MED-1{core}:3.47905873424;ZBTB6:3.44382195842;TFAP2B:3.42242803931;MTF1:3.22040687109;PAX5:3.08787345291;RREB1:3.07612647644;HIC1:3.07483378092;CUX2:2.96544596252;GTF2I:2.90191601222;RFX1:2.75365539521;SOX5:2.71677109408;MZF1:2.61137575671;SOX2:2.5856260554;BREu{core}:2.48865825882;SMAD1..7,9:2.46133969591;PRDM1:2.43835579676;JUN:2.42867582031;SOX{8,9,10}:2.35782211116;DBP:2.33593622078;LMO2:2.31156795754;PATZ1:2.30937102617;TGIF1:2.25134217553;POU6F1:2.24647813487;OCT4_SOX2{dimer}:2.20567145221;MAZ:2.1801250694;NFIX:2.15225281337;SOX17:2.09919533285;NKX3-2:2.07554895641;GFI1B:2.07280045774;TFDP1:2.05363050984;NANOG:2.01102442704;ESRRA:2.01102348722;LEF1_TCF7_TCF7L1,2:1.94879304064;FOXM1:1.93608314969;NKX2-3_NKX2-5:1.93416721728;HOXA9_MEIS1:1.92775816778;MAFB:1.87147554271;GCM1,2:1.84692548569;EBF1:1.79474976298;NRF1:1.7612227966;PAX6:1.74460116429;POU5F1:1.69658677678;ARID5B:1.69510728003;FOXQ1:1.576795634;XBP1:1.50892124111;RFX2..5_RFXANK_RFXAP:1.5086768784;FOX{F1,F2,J1}:1.47429454734;GTF2A1,2:1.45593052471;KLF4:1.45079784164;ZNF238:1.44359629908;HOX{A4,D4}:1.44076335316;SP1:1.40339913432;EP300:1.34326471059;MYOD1:1.34013975783;RORA:1.2945057974;GATA4:1.26109076712;SREBF1,2:1.25589178698;NFIL3:1.24875739965;CDC5L:1.21624978907;ZNF423:1.19226479077;TFAP2{A,C}:1.14631102381;HMGA1,2:1.08994644159;RBPJ:0.999214715174;HBP1_HMGB_SSRP1_UBTF:0.982981751647;ZNF143:0.961537747765;HAND1,2:0.946687991901;MEF2{A,B,C,D}:0.936443538248;POU3F1..4:0.931171471198;CREB1:0.876614243761;SPZ1:0.859095129256;TLX1..3_NFIC{dimer}:0.846497773;T:0.80938910108;ZEB1:0.782455168053;ADNP_IRX_SIX_ZHX:0.71095768349;CRX:0.706959381303;TLX2:0.678274693812;HMX1:0.669014438893;ALX1:0.667974012725;XCPE1{core}:0.618233675446;FOXP3:0.575905712296;TBX4,5:0.539730613302;AR:0.527561633712;YY1:0.488876869754;FOXN1:0.483179279054;ZIC1..3:0.48031605914;FOX{D1,D2}:0.472391038941;STAT1,3:0.451749932822;ATF5_CREB3:0.43554900708;ZNF384:0.417825608225;ONECUT1,2:0.400387835166;GZF1:0.362867649254;GFI1:0.357883943515;BPTF:0.330405537372;PBX1:0.324469310075;ATF4:0.31063650743;bHLH_family:0.307466833858;FOXP1:0.298321511593;PAX2:0.221491391972;NR3C1:0.203308427551;MYBL2:0.155134016689;NFY{A,B,C}:0.131319466322;IKZF1:0.101717208193;NFE2L2:0.0948280700365;NFATC1..3:0.0360393387965;NANOG{mouse}:0.0336918713473;PAX3,7:0.00692052204958;VSX1,2:-0.00456736015595;PAX4:-0.0614523113714;HOX{A6,A7,B6,B7}:-0.0714852697945;NKX6-1,2:-0.0769103991092;FOX{I1,J2}:-0.110418710312;IRF7:-0.182074830952;ZNF148:-0.18418197961;NR5A1,2:-0.194304243484;PDX1:-0.196831752723;IKZF2:-0.200908737183;PAX1,9:-0.210362811715;SNAI1..3:-0.213700385153;TEF:-0.233490638146;NFE2:-0.308999609474;FOXA2:-0.309050071654;LHX3,4:-0.367490385212;NFE2L1:-0.382413701621;POU1F1:-0.435063480408;TFCP2:-0.465051659358;TFAP4:-0.467500517678;GATA6:-0.483631815828;SPI1:-0.491241946822;STAT2,4,6:-0.516464599398;TOPORS:-0.517645691286;FOXL1:-0.540882832072;FOXO1,3,4:-0.541752418491;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.572420993544;IRF1,2:-0.580534638613;NR1H4:-0.621493252298;CEBPA,B_DDIT3:-0.623120200912;UFEwm:-0.666005021303;TAL1_TCF{3,4,12}:-0.674828366539;ESR1:-0.678247167338;ATF6:-0.687921936205;HSF1,2:-0.690450849554;FOXD3:-0.692501104397;ETS1,2:-0.712728639786;TP53:-0.715068260801;PPARG:-0.722432124451;DMAP1_NCOR{1,2}_SMARC:-0.732230518292;FOSL2:-0.741448675224;HNF1A:-0.748865398806;SPIB:-0.789600737377;PAX8:-0.813047645567;BACH2:-0.913147583467;FOS_FOS{B,L1}_JUN{B,D}:-0.91599827972;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.948880769797;TEAD1:-0.953658420518;ELK1,4_GABP{A,B1}:-1.03496873854;HNF4A_NR2F1,2:-1.05494734332;GLI1..3:-1.07527631952;SRF:-1.09089196977;TBP:-1.13004160987;RUNX1..3:-1.14030167268;HLF:-1.18543266082;NFKB1_REL_RELA:-1.20781189886;E2F1..5:-1.26572799762;HIF1A:-1.28256387409;RXR{A,B,G}:-1.33211870098;EN1,2:-1.39841043707;MYB:-1.46461272143;RXRA_VDR{dimer}:-1.50092786604;ELF1,2,4:-1.53620438266;ALX4:-1.60056637416;NKX3-1:-1.63560008908;POU2F1..3:-1.64028456539;EVI1:-1.69406080368;NKX2-1,4:-1.70701628905;HES1:-1.72112957772;NKX2-2,8:-1.73477630304;PITX1..3:-1.74280029209;STAT5{A,B}:-1.75256546657;ZBTB16:-1.93293269078;HOX{A5,B5}:-2.30810248722;CDX1,2,4:-2.38339000659;AIRE:-2.52666216475;NR6A1:-3.24300685861 | |top_motifs=REST:4.41168678832;NHLH1,2:4.25517519604;EGR1..3:3.92876270155;ZFP161:3.76169358698;MYFfamily:3.60437100948;MTE{core}:3.53849757977;PRRX1,2:3.51326076347;ATF2:3.49812436554;AHR_ARNT_ARNT2:3.48592004178;MED-1{core}:3.47905873424;ZBTB6:3.44382195842;TFAP2B:3.42242803931;MTF1:3.22040687109;PAX5:3.08787345291;RREB1:3.07612647644;HIC1:3.07483378092;CUX2:2.96544596252;GTF2I:2.90191601222;RFX1:2.75365539521;SOX5:2.71677109408;MZF1:2.61137575671;SOX2:2.5856260554;BREu{core}:2.48865825882;SMAD1..7,9:2.46133969591;PRDM1:2.43835579676;JUN:2.42867582031;SOX{8,9,10}:2.35782211116;DBP:2.33593622078;LMO2:2.31156795754;PATZ1:2.30937102617;TGIF1:2.25134217553;POU6F1:2.24647813487;OCT4_SOX2{dimer}:2.20567145221;MAZ:2.1801250694;NFIX:2.15225281337;SOX17:2.09919533285;NKX3-2:2.07554895641;GFI1B:2.07280045774;TFDP1:2.05363050984;NANOG:2.01102442704;ESRRA:2.01102348722;LEF1_TCF7_TCF7L1,2:1.94879304064;FOXM1:1.93608314969;NKX2-3_NKX2-5:1.93416721728;HOXA9_MEIS1:1.92775816778;MAFB:1.87147554271;GCM1,2:1.84692548569;EBF1:1.79474976298;NRF1:1.7612227966;PAX6:1.74460116429;POU5F1:1.69658677678;ARID5B:1.69510728003;FOXQ1:1.576795634;XBP1:1.50892124111;RFX2..5_RFXANK_RFXAP:1.5086768784;FOX{F1,F2,J1}:1.47429454734;GTF2A1,2:1.45593052471;KLF4:1.45079784164;ZNF238:1.44359629908;HOX{A4,D4}:1.44076335316;SP1:1.40339913432;EP300:1.34326471059;MYOD1:1.34013975783;RORA:1.2945057974;GATA4:1.26109076712;SREBF1,2:1.25589178698;NFIL3:1.24875739965;CDC5L:1.21624978907;ZNF423:1.19226479077;TFAP2{A,C}:1.14631102381;HMGA1,2:1.08994644159;RBPJ:0.999214715174;HBP1_HMGB_SSRP1_UBTF:0.982981751647;ZNF143:0.961537747765;HAND1,2:0.946687991901;MEF2{A,B,C,D}:0.936443538248;POU3F1..4:0.931171471198;CREB1:0.876614243761;SPZ1:0.859095129256;TLX1..3_NFIC{dimer}:0.846497773;T:0.80938910108;ZEB1:0.782455168053;ADNP_IRX_SIX_ZHX:0.71095768349;CRX:0.706959381303;TLX2:0.678274693812;HMX1:0.669014438893;ALX1:0.667974012725;XCPE1{core}:0.618233675446;FOXP3:0.575905712296;TBX4,5:0.539730613302;AR:0.527561633712;YY1:0.488876869754;FOXN1:0.483179279054;ZIC1..3:0.48031605914;FOX{D1,D2}:0.472391038941;STAT1,3:0.451749932822;ATF5_CREB3:0.43554900708;ZNF384:0.417825608225;ONECUT1,2:0.400387835166;GZF1:0.362867649254;GFI1:0.357883943515;BPTF:0.330405537372;PBX1:0.324469310075;ATF4:0.31063650743;bHLH_family:0.307466833858;FOXP1:0.298321511593;PAX2:0.221491391972;NR3C1:0.203308427551;MYBL2:0.155134016689;NFY{A,B,C}:0.131319466322;IKZF1:0.101717208193;NFE2L2:0.0948280700365;NFATC1..3:0.0360393387965;NANOG{mouse}:0.0336918713473;PAX3,7:0.00692052204958;VSX1,2:-0.00456736015595;PAX4:-0.0614523113714;HOX{A6,A7,B6,B7}:-0.0714852697945;NKX6-1,2:-0.0769103991092;FOX{I1,J2}:-0.110418710312;IRF7:-0.182074830952;ZNF148:-0.18418197961;NR5A1,2:-0.194304243484;PDX1:-0.196831752723;IKZF2:-0.200908737183;PAX1,9:-0.210362811715;SNAI1..3:-0.213700385153;TEF:-0.233490638146;NFE2:-0.308999609474;FOXA2:-0.309050071654;LHX3,4:-0.367490385212;NFE2L1:-0.382413701621;POU1F1:-0.435063480408;TFCP2:-0.465051659358;TFAP4:-0.467500517678;GATA6:-0.483631815828;SPI1:-0.491241946822;STAT2,4,6:-0.516464599398;TOPORS:-0.517645691286;FOXL1:-0.540882832072;FOXO1,3,4:-0.541752418491;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.572420993544;IRF1,2:-0.580534638613;NR1H4:-0.621493252298;CEBPA,B_DDIT3:-0.623120200912;UFEwm:-0.666005021303;TAL1_TCF{3,4,12}:-0.674828366539;ESR1:-0.678247167338;ATF6:-0.687921936205;HSF1,2:-0.690450849554;FOXD3:-0.692501104397;ETS1,2:-0.712728639786;TP53:-0.715068260801;PPARG:-0.722432124451;DMAP1_NCOR{1,2}_SMARC:-0.732230518292;FOSL2:-0.741448675224;HNF1A:-0.748865398806;SPIB:-0.789600737377;PAX8:-0.813047645567;BACH2:-0.913147583467;FOS_FOS{B,L1}_JUN{B,D}:-0.91599827972;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.948880769797;TEAD1:-0.953658420518;ELK1,4_GABP{A,B1}:-1.03496873854;HNF4A_NR2F1,2:-1.05494734332;GLI1..3:-1.07527631952;SRF:-1.09089196977;TBP:-1.13004160987;RUNX1..3:-1.14030167268;HLF:-1.18543266082;NFKB1_REL_RELA:-1.20781189886;E2F1..5:-1.26572799762;HIF1A:-1.28256387409;RXR{A,B,G}:-1.33211870098;EN1,2:-1.39841043707;MYB:-1.46461272143;RXRA_VDR{dimer}:-1.50092786604;ELF1,2,4:-1.53620438266;ALX4:-1.60056637416;NKX3-1:-1.63560008908;POU2F1..3:-1.64028456539;EVI1:-1.69406080368;NKX2-1,4:-1.70701628905;HES1:-1.72112957772;NKX2-2,8:-1.73477630304;PITX1..3:-1.74280029209;STAT5{A,B}:-1.75256546657;ZBTB16:-1.93293269078;HOX{A5,B5}:-2.30810248722;CDX1,2,4:-2.38339000659;AIRE:-2.52666216475;NR6A1:-3.24300685861 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10034-101E7;search_select_hide=table117:FF:10034-101E7 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | parietal lobe, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10641 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10641
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10641
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0314 |
| 10 | 10 | 0.0228 |
| 100 | 100 | 0.256 |
| 101 | 101 | 0.914 |
| 102 | 102 | 0.784 |
| 103 | 103 | 0.182 |
| 104 | 104 | 0.183 |
| 105 | 105 | 0.348 |
| 106 | 106 | 0.0595 |
| 107 | 107 | 0.126 |
| 108 | 108 | 0.829 |
| 109 | 109 | 0.00959 |
| 11 | 11 | 0.0143 |
| 110 | 110 | 0.0385 |
| 111 | 111 | 0.063 |
| 112 | 112 | 0.289 |
| 113 | 113 | 0.666 |
| 114 | 114 | 0.0835 |
| 115 | 115 | 0.918 |
| 116 | 116 | 0.18 |
| 117 | 117 | 0.00892 |
| 118 | 118 | 0.0963 |
| 119 | 119 | 0.104 |
| 12 | 12 | 0.799 |
| 120 | 120 | 0.13 |
| 121 | 121 | 0.682 |
| 122 | 122 | 0.549 |
| 123 | 123 | 0.619 |
| 124 | 124 | 0.0302 |
| 125 | 125 | 0.153 |
| 126 | 126 | 0.0324 |
| 127 | 127 | 0.484 |
| 128 | 128 | 0.154 |
| 129 | 129 | 0.544 |
| 13 | 13 | 0.00135 |
| 130 | 130 | 0.551 |
| 131 | 131 | 0.0619 |
| 132 | 132 | 0.716 |
| 133 | 133 | 0.00304 |
| 134 | 134 | 0.259 |
| 135 | 135 | 0.15 |
| 136 | 136 | 0.0103 |
| 137 | 137 | 0.794 |
| 138 | 138 | 0.822 |
| 139 | 139 | 0.0699 |
| 14 | 14 | 0.898 |
| 140 | 140 | 0.141 |
| 141 | 141 | 0.221 |
| 142 | 142 | 0.896 |
| 143 | 143 | 0.0151 |
| 144 | 144 | 0.805 |
| 145 | 145 | 0.0786 |
| 146 | 146 | 0.664 |
| 147 | 147 | 0.976 |
| 148 | 148 | 0.142 |
| 149 | 149 | 0.293 |
| 15 | 15 | 0.0757 |
| 150 | 150 | 0.184 |
| 151 | 151 | 0.663 |
| 152 | 152 | 0.155 |
| 153 | 153 | 0.741 |
| 154 | 154 | 0.602 |
| 155 | 155 | 0.366 |
| 156 | 156 | 0.484 |
| 157 | 157 | 0.431 |
| 158 | 158 | 0.788 |
| 159 | 159 | 0.0722 |
| 16 | 16 | 0.067 |
| 160 | 160 | 0.194 |
| 161 | 161 | 0.189 |
| 162 | 162 | 0.965 |
| 163 | 163 | 0.929 |
| 164 | 164 | 0.0161 |
| 165 | 165 | 0.0265 |
| 166 | 166 | 0.773 |
| 167 | 167 | 0.304 |
| 168 | 168 | 0.694 |
| 169 | 169 | 0.00772 |
| 17 | 17 | 0.161 |
| 18 | 18 | 0.186 |
| 19 | 19 | 0.208 |
| 2 | 2 | 0.989 |
| 20 | 20 | 0.097 |
| 21 | 21 | 0.0816 |
| 22 | 22 | 0.271 |
| 23 | 23 | 0.463 |
| 24 | 24 | 0.109 |
| 25 | 25 | 0.482 |
| 26 | 26 | 7.12615e-5 |
| 27 | 27 | 0.969 |
| 28 | 28 | 0.7 |
| 29 | 29 | 0.00977 |
| 3 | 3 | 0.0247 |
| 30 | 30 | 0.592 |
| 31 | 31 | 0.907 |
| 32 | 32 | 0.0266 |
| 33 | 33 | 0.0718 |
| 34 | 34 | 0.836 |
| 35 | 35 | 0.473 |
| 36 | 36 | 0.0901 |
| 37 | 37 | 0.0396 |
| 38 | 38 | 0.324 |
| 39 | 39 | 0.264 |
| 4 | 4 | 0.977 |
| 40 | 40 | 0.0589 |
| 41 | 41 | 0.457 |
| 42 | 42 | 0.168 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.0782 |
| 45 | 45 | 0.828 |
| 46 | 46 | 0.0455 |
| 47 | 47 | 0.0608 |
| 48 | 48 | 0.0534 |
| 49 | 49 | 0.137 |
| 5 | 5 | 0.465 |
| 50 | 50 | 0.371 |
| 51 | 51 | 0.514 |
| 52 | 52 | 0.627 |
| 53 | 53 | 0.916 |
| 54 | 54 | 0.506 |
| 55 | 55 | 0.351 |
| 56 | 56 | 0.477 |
| 57 | 57 | 0.23 |
| 58 | 58 | 0.297 |
| 59 | 59 | 0.134 |
| 6 | 6 | 0.562 |
| 60 | 60 | 0.0792 |
| 61 | 61 | 0.0648 |
| 62 | 62 | 0.163 |
| 63 | 63 | 0.17 |
| 64 | 64 | 0.21 |
| 65 | 65 | 0.29 |
| 66 | 66 | 0.311 |
| 67 | 67 | 0.33 |
| 68 | 68 | 0.377 |
| 69 | 69 | 0.381 |
| 7 | 7 | 0.0611 |
| 70 | 70 | 0.0211 |
| 71 | 71 | 0.00733 |
| 72 | 72 | 0.468 |
| 73 | 73 | 0.0508 |
| 74 | 74 | 0.655 |
| 75 | 75 | 0.0293 |
| 76 | 76 | 0.363 |
| 77 | 77 | 0.231 |
| 78 | 78 | 0.00291 |
| 79 | 79 | 0.172 |
| 8 | 8 | 0.0463 |
| 80 | 80 | 0.989 |
| 81 | 81 | 0.532 |
| 82 | 82 | 0.446 |
| 83 | 83 | 0.163 |
| 84 | 84 | 0.63 |
| 85 | 85 | 0.232 |
| 86 | 86 | 0.211 |
| 87 | 87 | 0.00851 |
| 88 | 88 | 0.867 |
| 89 | 89 | 0.531 |
| 9 | 9 | 0.544 |
| 90 | 90 | 0.0326 |
| 91 | 91 | 0.435 |
| 92 | 92 | 0.464 |
| 93 | 93 | 0.701 |
| 94 | 94 | 0.0573 |
| 95 | 95 | 0.0291 |
| 96 | 96 | 0.965 |
| 97 | 97 | 0.774 |
| 98 | 98 | 0.196 |
| 99 | 99 | 0.784 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10641
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010034 (human parietal lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
