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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00004973
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000188,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004973
|HumanCAGEScanFiles=NCig10050;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.NCig10050.11282-116I4.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008461;DRR009333;DRZ000758;DRZ002143;DRZ012108;DRZ013493
|accession_numbers_RNASeq=sRNA-Seq;DRX037047;DRR041413;DRZ007055
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162,FF:0104975
|comment=
|comment=
|created_by=tmeehan
|created_by=tmeehan
|creation_date=2011-03-06T03:58:36Z
|creation_date=2011-03-06T03:58:36Z
|data_phase=2
|datafreeze_phase=2
|def="Skeletal muscle cells derived from myotubules." [GOC:tfm]
|def="Skeletal muscle cells derived from myotubules." [GOC:tfm]
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.54!346.16!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.34!376.96!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!1.90!78.35!HEYL;;chr9:20382446..20382493,-!p4@MLLT3!1.79!61.25!MLLT3;;chr15:57511609..57511651,+!p2@TCF12!1.77!96.07!TCF12;;chr8:25902876..25902936,-!p1@EBF2!1.69!47.54!EBF2;;chr14:61116183..61116208,-!p1@SIX1!1.59!139.87!SIX1;;chr11:17741111..17741124,+!p1@MYOD1!1.57!36.50!MYOD1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.52!32.32!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.45!30.81!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.44!26.35!MEOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!124.56!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.41!63.39!HIC1;;chr19:2867325..2867348,+!p1@ZNF556!1.41!24.93!ZNF556;;chr12:81110684..81110700,+!p1@MYF5!1.41!24.66!MYF5;;chr2:239148671..239148686,-!p1@HES6!1.40!86.63!HES6;;chr10:64576105..64576133,-!p1@EGR2!1.38!46.03!EGR2;;chr21:36421535..36421610,-!p2@RUNX1!1.36!77.01!RUNX1;;chr1:170633348..170633399,+!p2@PRRX1!1.34!28.13!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.34!20.66!PKNOX2;;chr8:72756637..72756664,-!p3@MSC!1.33!23.33!MSC;;chr16:1031762..1031781,+!p1@SOX8!1.32!19.77!SOX8;;chr19:13134772..13134822,+!p2@NFIX!1.27!25.82!NFIX;;chr8:72756667..72756736,-!p2@MSC!1.25!26.26!MSC;;chr1:151032922..151032951,+!p2@MLLT11!1.23!26.62!MLLT11;;chr5:88178983..88179012,-!p1@MEF2C!1.22!118.23!MEF2C;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.07!HOXC9;;chr1:244214577..244214593,+!p1@ZNF238!1.18!13.98!ZNF238;;chr12:125003087..125003141,-!p4@NCOR2!1.17!17.72!NCOR2;;chr10:104001259..104001274,-!p1@PITX3!1.17!13.71!PITX3;;chr4:111558135..111558198,-!p2@PITX2!1.17!13.71!PITX2;;chr1:151032860..151032918,+!p1@MLLT11!1.15!152.96!MLLT11;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.14!RUNX2;;chr12:54378923..54378966,+!p1@HOXC10!1.14!12.91!HOXC10;;chr19:50432453..50432468,+!p1@ATF5!1.13!696.85!ATF5;;chr19:45260775..45260838,+!p5@BCL3!1.13!16.38!BCL3;;chr11:17741254..17741282,+!p2@MYOD1!1.11!11.84!MYOD1;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.66!SOX11;;chr7:15726243..15726293,-!p2@MEOX2!1.08!11.13!MEOX2;;chr1:119530493..119530572,-!p1@TBX15!1.05!10.15!TBX15;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.31!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.03!16.65!CREB3L1;;chr2:24714729..24714761,+!p1@NCOA1!1.03!9.62!NCOA1;;chr7:27196267..27196311,-!p1@HOXA7!1.02!9.53!HOXA7;;chr11:125034605..125034636,+!p2@PKNOX2!1.00!8.90!PKNOX2;;chr5:72744594..72744609,-!p1@FOXD1!0.99!40.60!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.26!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.96!53.78!HIC1;;chr18:53068911..53068935,-!p4@TCF4!0.95!8.90!TCF4;;chr10:131762504..131762555,-!p1@EBF3!0.95!8.01!EBF3;;chr12:125002827..125002855,-!p5@NCOR2!0.94!11.04!NCOR2;;chr3:25470156..25470227,+!p2@RARB!0.90!7.03!RARB;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.94!SIX2;;chr7:150945754..150945789,-!p2@SMARCD3!0.89!21.81!SMARCD3;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.68!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.88!10.24!PITX1;;chr19:49864746..49864780,-!p2@TEAD2!0.88!9.26!TEAD2;;chr1:18957333..18957375,+!p1@PAX7!0.87!6.41!PAX7;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.41!ZEB2;;chr12:3068544..3068597,+!p1@TEAD4!0.86!40.06!TEAD4;;chr8:72756063..72756125,-!p1@MSC!0.86!13.27!MSC;;chr1:165414227..165414242,-!p2@RXRG!0.86!6.32!RXRG;;chr11:125034586..125034604,+!p3@PKNOX2!0.86!6.23!PKNOX2;;chr4:111544219..111544240,-!p1@PITX2!0.86!6.23!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.05!HOXC5;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.90!HEY1;;chr18:22932080..22932170,-!p1@ZNF521!0.83!26.26!ZNF521;;chr12:48298765..48298783,-!p2@VDR!0.83!12.64!VDR;;chr1:23696448..23696453,-!p5@ZNF436!0.83!7.12!ZNF436;;chr12:54410948..54410992,+!p3@HOXC5!0.83!5.70!HOXC5;;chr3:52001448..52001478,-!p2@PCBP4!0.82!83.96!PCBP4;;chr14:61116168..61116180,-!p2@SIX1!0.82!6.50!SIX1;;chr1:40367668..40367684,-!p2@MYCL1!0.82!5.61!MYCL1;;chr15:57511589..57511608,+!p4@TCF12!0.82!5.61!TCF12;;chr8:25902668..25902680,-!p3@EBF2!0.81!5.52!EBF2;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.52!HOXD8;;chr22:19748231..19748317,+!p1@TBX1!0.81!5.43!TBX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.81!5.43!PEG3;;chr12:125002739..125002756,-!p6@NCOR2!0.80!8.19!NCOR2;;chr8:72756267..72756296,-!p4@MSC!0.80!8.10!MSC;;chr12:54379029..54379057,+!p2@HOXC10!0.80!5.34!HOXC10;;chr10:104001289..104001310,-!p2@PITX3!0.80!5.25!PITX3;;chr20:30433396..30433414,-!p1@FOXS1!0.80!5.25!FOXS1;;chr11:17741084..17741094,+!p3@MYOD1!0.78!5.07!MYOD1;;chr13:73633131..73633149,+!p1@KLF5!0.77!57.96!KLF5;;chr3:141747459..141747475,-!p1@TFDP2!0.77!44.43!TFDP2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.28!SNAI2;;chr2:145275162..145275202,-!p2@ZEB2!0.77!31.61!ZEB2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.59!TSHZ2;;chr4:174451370..174451387,-!p1@HAND2!0.77!4.90!HAND2;;chr1:41827095..41827155,+!p1@FOXO6!0.76!6.68!FOXO6;;chr2:119605214..119605230,-!p1@EN1!0.76!4.81!EN1;;chr16:31076273..31076288,-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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520muscle%2520cells%2520differentiated%2520into%2520Myotubes%2520-%2520multinucleated%252c%2520donor1.CNhs11084.11282-116I4.hg38.nobarcode.ctss.bed.gz
|id=FF:11282-116I4
|id=FF:11282-116I4
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0104975
|is_a=EFO:0002091;;FF:0104975
|is_obsolete=
|library_id=CNhs11084
|library_id_phase_based=2:CNhs11084
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11282
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTAGAG.11282
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11282
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTAGAG.11282
|name=Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
|name=Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 66:
|profile_cagescan=NCig10050,,,
|profile_cagescan=NCig10050,,,
|profile_hcage=CNhs11084,LSID724,release008,COMPLETED
|profile_hcage=CNhs11084,LSID724,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0.78985262985064,0,0.0500604919608165,0,-0.206193221154561,-0.263883232866197,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116282354926937,0,0.13826770559353,0,0,0,-0.0609172408465664,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0,-0.189504136031258,0,0,0,0,0,0,0,0,-0.0056946934020888,0,0,0,0.0370406554214911,0,0.0370406554214911,0.102809556581045,-0.0969923612426051,0,0,0.0349571013953984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0370406554214911,0.0711689110389527,0.0185203277107455,0,0,0.136831753840418,0.0616417037925133,0.0185203277107455,0.444144877224401,0,0.0370406554214911,-0.0268664401987537,-0.119956873090149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0204107906016815,0.102809556581045,0,0,-0.133148912944135,-0.145865846607338,0,0,0,0,0,0
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA150D-R10f
|rna_catalog_number=CA150D-R10f
Line 55: Line 83:
|rna_tube_id=116I4
|rna_tube_id=116I4
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GTAGAG
|sample_age=embryo 22week
|sample_age=embryo 22week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 98:
|sample_ethnicity=U
|sample_ethnicity=U
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.92879069752607e-243!GO:0043226;organelle;3.70733187604252e-195!GO:0043229;intracellular organelle;6.37269879927266e-195!GO:0005737;cytoplasm;3.63900984458414e-193!GO:0043231;intracellular membrane-bound organelle;6.06254621375055e-177!GO:0043227;membrane-bound organelle;1.83588092459527e-176!GO:0044422;organelle part;6.92788842445799e-140!GO:0044446;intracellular organelle part;1.20255624015233e-138!GO:0044444;cytoplasmic part;1.130835241887e-132!GO:0032991;macromolecular complex;1.07268849596465e-106!GO:0005515;protein binding;4.79181577876444e-95!GO:0030529;ribonucleoprotein complex;1.426716615088e-82!GO:0044238;primary metabolic process;1.53011392331736e-78!GO:0044237;cellular metabolic process;8.25617441485996e-78!GO:0005634;nucleus;2.8283523209662e-74!GO:0043170;macromolecule metabolic process;1.89965445408702e-73!GO:0043233;organelle lumen;3.16113487230231e-71!GO:0031974;membrane-enclosed lumen;3.16113487230231e-71!GO:0044428;nuclear part;2.0029789254926e-70!GO:0003723;RNA binding;3.34031492666887e-66!GO:0043234;protein complex;2.04109535366502e-56!GO:0005739;mitochondrion;8.44899139344837e-56!GO:0016043;cellular component organization and biogenesis;2.37185353085417e-53!GO:0005840;ribosome;1.11838251222742e-48!GO:0006396;RNA processing;3.47378370801395e-46!GO:0043283;biopolymer metabolic process;1.3148915523728e-43!GO:0019538;protein metabolic process;2.18575244541103e-43!GO:0031090;organelle membrane;2.48811605083476e-43!GO:0006412;translation;3.98469558182409e-43!GO:0010467;gene expression;1.01654984729088e-42!GO:0043228;non-membrane-bound organelle;2.61950870797919e-42!GO:0043232;intracellular non-membrane-bound organelle;2.61950870797919e-42!GO:0003735;structural constituent of ribosome;2.687119694552e-42!GO:0031981;nuclear lumen;7.87313120683442e-42!GO:0044260;cellular macromolecule metabolic process;1.27506965027573e-38!GO:0044429;mitochondrial part;1.34559003921719e-38!GO:0015031;protein transport;1.92123310199646e-38!GO:0033036;macromolecule localization;2.81798305474557e-38!GO:0016071;mRNA metabolic process;5.59722195189014e-38!GO:0031967;organelle envelope;1.34008477010177e-37!GO:0044267;cellular protein metabolic process;1.43156084457377e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12971741041897e-37!GO:0031975;envelope;2.72644242016296e-37!GO:0033279;ribosomal subunit;8.44035344427944e-37!GO:0008104;protein localization;8.67153499312825e-35!GO:0009058;biosynthetic process;9.02419707885375e-35!GO:0008380;RNA splicing;1.44570132200529e-34!GO:0045184;establishment of protein localization;2.26158547434414e-34!GO:0005829;cytosol;4.00169575461181e-34!GO:0046907;intracellular transport;2.53091269265123e-33!GO:0009059;macromolecule biosynthetic process;3.70390982845923e-33!GO:0044249;cellular biosynthetic process;5.26989716978061e-33!GO:0006996;organelle organization and biogenesis;6.74741276032167e-33!GO:0006397;mRNA processing;1.38837889867969e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.22228760370546e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.11372735810597e-27!GO:0065003;macromolecular complex assembly;1.76092387354239e-27!GO:0006886;intracellular protein transport;6.01589749185379e-27!GO:0022607;cellular component assembly;6.78988038465019e-27!GO:0005654;nucleoplasm;4.04640792969911e-26!GO:0005740;mitochondrial envelope;7.83418819615495e-26!GO:0019866;organelle inner membrane;5.26616593187017e-25!GO:0005681;spliceosome;1.04081279891275e-24!GO:0031966;mitochondrial membrane;2.39161078433367e-24!GO:0005743;mitochondrial inner membrane;3.4811126666043e-23!GO:0003676;nucleic acid binding;8.80804620789462e-23!GO:0044451;nucleoplasm part;1.34659420366093e-21!GO:0044445;cytosolic part;2.03702412098128e-21!GO:0005783;endoplasmic reticulum;1.25716091821791e-20!GO:0006119;oxidative phosphorylation;1.95531073180862e-20!GO:0016070;RNA metabolic process;6.16967138930707e-20!GO:0051641;cellular localization;8.91108129133306e-20!GO:0000166;nucleotide binding;9.19633226407281e-20!GO:0051649;establishment of cellular localization;1.59769030482192e-19!GO:0006259;DNA metabolic process;3.8579765036932e-19!GO:0006457;protein folding;4.5726127030694e-19!GO:0015935;small ribosomal subunit;7.61389271206206e-19!GO:0015934;large ribosomal subunit;7.61389271206206e-19!GO:0008134;transcription factor binding;1.72253471163102e-18!GO:0044455;mitochondrial membrane part;2.75226300448338e-18!GO:0006512;ubiquitin cycle;9.02547578628069e-18!GO:0012505;endomembrane system;3.95562624400094e-17!GO:0016462;pyrophosphatase activity;4.9856606327984e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.94052468536798e-17!GO:0005730;nucleolus;7.24083850252166e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.68941870762525e-17!GO:0044432;endoplasmic reticulum part;1.00423905351694e-16!GO:0048770;pigment granule;1.02891314223026e-16!GO:0042470;melanosome;1.02891314223026e-16!GO:0022618;protein-RNA complex assembly;1.26451839299609e-16!GO:0017111;nucleoside-triphosphatase activity;1.90617313890253e-16!GO:0016874;ligase activity;2.03438634728164e-16!GO:0005746;mitochondrial respiratory chain;6.186070477039e-16!GO:0007049;cell cycle;7.54120214448721e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.39940329696458e-15!GO:0031980;mitochondrial lumen;1.41657166552419e-15!GO:0005759;mitochondrial matrix;1.41657166552419e-15!GO:0008135;translation factor activity, nucleic acid binding;1.79829921678702e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.26262718542192e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.22488625188922e-14!GO:0019941;modification-dependent protein catabolic process;1.52924109913367e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.52924109913367e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.92887591311887e-14!GO:0051186;cofactor metabolic process;2.14207299145736e-14!GO:0006605;protein targeting;2.19559895469421e-14!GO:0044257;cellular protein catabolic process;2.50857453775914e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.60745779484397e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.48707615599782e-14!GO:0003954;NADH dehydrogenase activity;3.48707615599782e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.48707615599782e-14!GO:0044265;cellular macromolecule catabolic process;3.95601944531627e-14!GO:0043285;biopolymer catabolic process;5.31627889124908e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.1002246787269e-13!GO:0005794;Golgi apparatus;2.57992732438059e-13!GO:0005761;mitochondrial ribosome;2.68445677993062e-13!GO:0000313;organellar ribosome;2.68445677993062e-13!GO:0032553;ribonucleotide binding;2.71775439890205e-13!GO:0032555;purine ribonucleotide binding;2.71775439890205e-13!GO:0048193;Golgi vesicle transport;2.78356728032737e-13!GO:0030163;protein catabolic process;3.77758250837388e-13!GO:0017076;purine nucleotide binding;8.71106014769127e-13!GO:0042254;ribosome biogenesis and assembly;9.0400305050193e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.73809249136619e-12!GO:0000375;RNA splicing, via transesterification reactions;1.73809249136619e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.73809249136619e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.80622975063695e-12!GO:0042773;ATP synthesis coupled electron transport;1.80622975063695e-12!GO:0008092;cytoskeletal protein binding;1.94754545250136e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.96006587127624e-12!GO:0045271;respiratory chain complex I;1.96006587127624e-12!GO:0005747;mitochondrial respiratory chain complex I;1.96006587127624e-12!GO:0051082;unfolded protein binding;1.99499250945077e-12!GO:0016192;vesicle-mediated transport;2.9863695996666e-12!GO:0009057;macromolecule catabolic process;3.10218444441833e-12!GO:0003712;transcription cofactor activity;3.76350665496664e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.66822647188554e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.90160587143276e-12!GO:0043412;biopolymer modification;4.90160587143276e-12!GO:0005635;nuclear envelope;5.44381697986117e-12!GO:0022402;cell cycle process;8.81217247367978e-12!GO:0031965;nuclear membrane;1.41609890050305e-11!GO:0003743;translation initiation factor activity;2.57654748217066e-11!GO:0006732;coenzyme metabolic process;4.86243439358259e-11!GO:0005793;ER-Golgi intermediate compartment;5.10651113968668e-11!GO:0005788;endoplasmic reticulum lumen;5.21112880165001e-11!GO:0006366;transcription from RNA polymerase II promoter;5.59217498442665e-11!GO:0006464;protein modification process;8.67141990365949e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27545427555971e-10!GO:0006913;nucleocytoplasmic transport;2.59853282019427e-10!GO:0005524;ATP binding;3.35135432811597e-10!GO:0006413;translational initiation;3.8694890194811e-10!GO:0000278;mitotic cell cycle;3.89192670770172e-10!GO:0005789;endoplasmic reticulum membrane;4.13860821718313e-10!GO:0044248;cellular catabolic process;4.28244430818887e-10!GO:0006446;regulation of translational initiation;5.28765351750258e-10!GO:0016604;nuclear body;5.63854891600518e-10!GO:0051169;nuclear transport;6.85186182837647e-10!GO:0032559;adenyl ribonucleotide binding;7.45859183909434e-10!GO:0006163;purine nucleotide metabolic process;9.08344725363903e-10!GO:0006974;response to DNA damage stimulus;1.01675961232872e-09!GO:0009259;ribonucleotide metabolic process;1.03391002643878e-09!GO:0005694;chromosome;1.24003880738893e-09!GO:0044453;nuclear membrane part;1.29900638447059e-09!GO:0051276;chromosome organization and biogenesis;1.38564660070117e-09!GO:0009150;purine ribonucleotide metabolic process;1.61862820179967e-09!GO:0008565;protein transporter activity;1.71182732680973e-09!GO:0043687;post-translational protein modification;1.87490284329192e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.3976851818046e-09!GO:0030554;adenyl nucleotide binding;2.66438594302622e-09!GO:0008639;small protein conjugating enzyme activity;5.23196979279327e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.0049435018596e-09!GO:0050794;regulation of cellular process;7.97403998175154e-09!GO:0012501;programmed cell death;8.26042826401621e-09!GO:0004842;ubiquitin-protein ligase activity;8.44740673171262e-09!GO:0015629;actin cytoskeleton;8.71306393237952e-09!GO:0006323;DNA packaging;8.71584278880609e-09!GO:0007517;muscle development;9.84984879280835e-09!GO:0009055;electron carrier activity;1.04860277235059e-08!GO:0019787;small conjugating protein ligase activity;1.35126271279231e-08!GO:0006915;apoptosis;1.38364442643588e-08!GO:0016607;nuclear speck;2.07155108178602e-08!GO:0003924;GTPase activity;2.14522234757678e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.30459346960973e-08!GO:0065002;intracellular protein transport across a membrane;2.42461090853002e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.75140036340744e-08!GO:0017038;protein import;3.06652710816912e-08!GO:0006164;purine nucleotide biosynthetic process;3.18791065068248e-08!GO:0009141;nucleoside triphosphate metabolic process;3.80494367062031e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.02612763050805e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.02612763050805e-08!GO:0006399;tRNA metabolic process;4.23499260260693e-08!GO:0009060;aerobic respiration;4.62615253832584e-08!GO:0042623;ATPase activity, coupled;5.13022228669765e-08!GO:0050789;regulation of biological process;5.1358502800828e-08!GO:0006364;rRNA processing;5.53076457089207e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.88098984957918e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.11534783299599e-08!GO:0044427;chromosomal part;6.41175902562878e-08!GO:0009260;ribonucleotide biosynthetic process;6.92984195734644e-08!GO:0051726;regulation of cell cycle;8.04582302604206e-08!GO:0000074;regulation of progression through cell cycle;9.13627384262291e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.35540278772382e-08!GO:0016887;ATPase activity;9.35540278772382e-08!GO:0048523;negative regulation of cellular process;9.68802464818831e-08!GO:0045333;cellular respiration;1.08437675368285e-07!GO:0005643;nuclear pore;1.09212266711919e-07!GO:0016072;rRNA metabolic process;1.11902542747237e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12595433779072e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.12595433779072e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12595433779072e-07!GO:0046034;ATP metabolic process;1.18157306877805e-07!GO:0005667;transcription factor complex;1.18157306877805e-07!GO:0044449;contractile fiber part;1.2370685804717e-07!GO:0065004;protein-DNA complex assembly;1.27879473652298e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.33224654775181e-07!GO:0008219;cell death;1.40804760705586e-07!GO:0016265;death;1.40804760705586e-07!GO:0003779;actin binding;1.48598528160216e-07!GO:0016881;acid-amino acid ligase activity;1.65784370438264e-07!GO:0050657;nucleic acid transport;1.66148717091124e-07!GO:0051236;establishment of RNA localization;1.66148717091124e-07!GO:0050658;RNA transport;1.66148717091124e-07!GO:0007010;cytoskeleton organization and biogenesis;1.67284927176191e-07!GO:0006281;DNA repair;1.67284927176191e-07!GO:0006403;RNA localization;1.961515424211e-07!GO:0015986;ATP synthesis coupled proton transport;2.3364897264893e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.3364897264893e-07!GO:0004386;helicase activity;2.36632567188338e-07!GO:0043038;amino acid activation;2.70777150814155e-07!GO:0006418;tRNA aminoacylation for protein translation;2.70777150814155e-07!GO:0043039;tRNA aminoacylation;2.70777150814155e-07!GO:0006461;protein complex assembly;2.76126609804666e-07!GO:0009719;response to endogenous stimulus;3.04293368071412e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.83883783434181e-07!GO:0030029;actin filament-based process;3.85427497220613e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.97510160398735e-07!GO:0006099;tricarboxylic acid cycle;4.08321092280961e-07!GO:0046356;acetyl-CoA catabolic process;4.08321092280961e-07!GO:0043292;contractile fiber;4.43672324389349e-07!GO:0006333;chromatin assembly or disassembly;4.71205540035668e-07!GO:0030036;actin cytoskeleton organization and biogenesis;5.03126977748828e-07!GO:0048475;coated membrane;5.03126977748828e-07!GO:0030117;membrane coat;5.03126977748828e-07!GO:0030120;vesicle coat;5.54346421756508e-07!GO:0030662;coated vesicle membrane;5.54346421756508e-07!GO:0019829;cation-transporting ATPase activity;5.95759709393324e-07!GO:0008026;ATP-dependent helicase activity;7.29076274899929e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.5843241354692e-07!GO:0022403;cell cycle phase;8.80096454485713e-07!GO:0003714;transcription corepressor activity;9.14530326018782e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.19074709194714e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.19074709194714e-07!GO:0031252;leading edge;9.31961474499985e-07!GO:0051246;regulation of protein metabolic process;1.01548542487453e-06!GO:0051187;cofactor catabolic process;1.10226805465737e-06!GO:0009109;coenzyme catabolic process;1.11203622339756e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.11367342901865e-06!GO:0051188;cofactor biosynthetic process;1.17950258416016e-06!GO:0000087;M phase of mitotic cell cycle;1.19069933608036e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.32929457579749e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32929457579749e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32929457579749e-06!GO:0007067;mitosis;1.40297036147458e-06!GO:0015630;microtubule cytoskeleton;1.41817215587051e-06!GO:0006260;DNA replication;1.49685716782668e-06!GO:0043566;structure-specific DNA binding;1.52687801002981e-06!GO:0006084;acetyl-CoA metabolic process;1.7051238317552e-06!GO:0051301;cell division;2.03475659987994e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.1914007248157e-06!GO:0003697;single-stranded DNA binding;2.20827019766696e-06!GO:0000785;chromatin;2.57055440100663e-06!GO:0046930;pore complex;3.19796719595404e-06!GO:0016564;transcription repressor activity;3.36876783837476e-06!GO:0048519;negative regulation of biological process;3.39550436263823e-06!GO:0006752;group transfer coenzyme metabolic process;3.66454733636456e-06!GO:0005525;GTP binding;4.11278938996181e-06!GO:0006754;ATP biosynthetic process;4.11278938996181e-06!GO:0006753;nucleoside phosphate metabolic process;4.11278938996181e-06!GO:0005768;endosome;4.35511218348678e-06!GO:0032446;protein modification by small protein conjugation;4.47281452017214e-06!GO:0000245;spliceosome assembly;4.94532436001209e-06!GO:0051170;nuclear import;5.40017650553442e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.55343823401513e-06!GO:0051028;mRNA transport;5.69326222238841e-06!GO:0005798;Golgi-associated vesicle;5.70059455842575e-06!GO:0016567;protein ubiquitination;6.08240489979895e-06!GO:0016563;transcription activator activity;6.39623493035074e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.98123620924712e-06!GO:0006606;protein import into nucleus;7.42111111939388e-06!GO:0016853;isomerase activity;7.48656897252123e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.72978735226368e-06!GO:0009056;catabolic process;8.69528047536562e-06!GO:0045259;proton-transporting ATP synthase complex;9.01273954218866e-06!GO:0003713;transcription coactivator activity;1.05811534441061e-05!GO:0006334;nucleosome assembly;1.05811534441061e-05!GO:0019222;regulation of metabolic process;1.12828179137815e-05!GO:0009117;nucleotide metabolic process;1.15057568560085e-05!GO:0006613;cotranslational protein targeting to membrane;1.2559579430902e-05!GO:0031324;negative regulation of cellular metabolic process;1.26842018742249e-05!GO:0016568;chromatin modification;1.29986819593324e-05!GO:0004298;threonine endopeptidase activity;1.43058109282819e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.79168638192569e-05!GO:0051427;hormone receptor binding;1.79295221991845e-05!GO:0000151;ubiquitin ligase complex;1.8657268444492e-05!GO:0007005;mitochondrion organization and biogenesis;1.97844427502727e-05!GO:0051789;response to protein stimulus;1.97844427502727e-05!GO:0006986;response to unfolded protein;1.97844427502727e-05!GO:0042981;regulation of apoptosis;1.97844427502727e-05!GO:0044431;Golgi apparatus part;2.14826875330347e-05!GO:0044440;endosomal part;2.17861497455944e-05!GO:0010008;endosome membrane;2.17861497455944e-05!GO:0045786;negative regulation of progression through cell cycle;2.25514679934456e-05!GO:0031497;chromatin assembly;2.32169247417711e-05!GO:0043067;regulation of programmed cell death;2.52828211441359e-05!GO:0030016;myofibril;3.55867188856198e-05!GO:0035257;nuclear hormone receptor binding;3.86566635070149e-05!GO:0009108;coenzyme biosynthetic process;3.8725780135457e-05!GO:0032561;guanyl ribonucleotide binding;3.8725780135457e-05!GO:0019001;guanyl nucleotide binding;3.8725780135457e-05!GO:0009892;negative regulation of metabolic process;3.93645253305829e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.25721803387613e-05!GO:0030867;rough endoplasmic reticulum membrane;4.3719720021698e-05!GO:0016491;oxidoreductase activity;4.37324033683836e-05!GO:0005856;cytoskeleton;4.97226037691142e-05!GO:0003724;RNA helicase activity;5.08873295412043e-05!GO:0016859;cis-trans isomerase activity;5.45475930782616e-05!GO:0043069;negative regulation of programmed cell death;5.47134003098224e-05!GO:0016481;negative regulation of transcription;5.48967050621311e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.754219269194e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.68387687669782e-05!GO:0045454;cell redox homeostasis;6.68765417477963e-05!GO:0005865;striated muscle thin filament;6.76719559390107e-05!GO:0031988;membrane-bound vesicle;7.24303608847182e-05!GO:0008361;regulation of cell size;7.44520698629868e-05!GO:0043066;negative regulation of apoptosis;7.58520496751375e-05!GO:0016049;cell growth;8.94409909161939e-05!GO:0005791;rough endoplasmic reticulum;9.1636879345396e-05!GO:0000279;M phase;0.000110305641749633!GO:0006916;anti-apoptosis;0.000111876000783305!GO:0008307;structural constituent of muscle;0.000114424394765199!GO:0014706;striated muscle development;0.000127791563712234!GO:0043021;ribonucleoprotein binding;0.0001330651424082!GO:0030017;sarcomere;0.000157112191856855!GO:0006793;phosphorus metabolic process;0.000159442526990791!GO:0006796;phosphate metabolic process;0.000159442526990791!GO:0065007;biological regulation;0.00016374773663618!GO:0005770;late endosome;0.000165563357754926!GO:0044420;extracellular matrix part;0.000170019016770954!GO:0016126;sterol biosynthetic process;0.000180561285406728!GO:0031982;vesicle;0.0001904305047973!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000191948595057083!GO:0008654;phospholipid biosynthetic process;0.000197635486691386!GO:0005762;mitochondrial large ribosomal subunit;0.000198181868495281!GO:0000315;organellar large ribosomal subunit;0.000198181868495281!GO:0031410;cytoplasmic vesicle;0.000199736859809087!GO:0016044;membrane organization and biogenesis;0.000209327400190572!GO:0016310;phosphorylation;0.000219236540359549!GO:0000314;organellar small ribosomal subunit;0.000242810786643565!GO:0005763;mitochondrial small ribosomal subunit;0.000242810786643565!GO:0033116;ER-Golgi intermediate compartment membrane;0.000282296652438616!GO:0003729;mRNA binding;0.000289982755193482!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000343380234225519!GO:0030133;transport vesicle;0.000343395184951318!GO:0043284;biopolymer biosynthetic process;0.000357000510602885!GO:0006612;protein targeting to membrane;0.000365838610980038!GO:0030663;COPI coated vesicle membrane;0.000385838520688427!GO:0030126;COPI vesicle coat;0.000385838520688427!GO:0016779;nucleotidyltransferase activity;0.000404860460938377!GO:0005769;early endosome;0.000426795643031956!GO:0007519;skeletal muscle development;0.000426795643031956!GO:0051329;interphase of mitotic cell cycle;0.000456940823285485!GO:0008250;oligosaccharyl transferase complex;0.000468496848598072!GO:0003899;DNA-directed RNA polymerase activity;0.000472481472988389!GO:0001558;regulation of cell growth;0.000488333948642377!GO:0043623;cellular protein complex assembly;0.000493105824577964!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000537287386326067!GO:0008186;RNA-dependent ATPase activity;0.000582894623489534!GO:0005813;centrosome;0.000611176475021339!GO:0005048;signal sequence binding;0.000623470104056903!GO:0005885;Arp2/3 protein complex;0.000630664578679458!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000711807637515122!GO:0006414;translational elongation;0.000803949467482663!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000811173930524229!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000825303352410053!GO:0004576;oligosaccharyl transferase activity;0.00083419722142815!GO:0016740;transferase activity;0.000895502403100209!GO:0019899;enzyme binding;0.000913003973159274!GO:0051168;nuclear export;0.000923261982153935!GO:0005905;coated pit;0.000956408999679224!GO:0016363;nuclear matrix;0.000986734542085613!GO:0001725;stress fiber;0.00100891420548502!GO:0032432;actin filament bundle;0.00100891420548502!GO:0006091;generation of precursor metabolites and energy;0.0010218367535599!GO:0007264;small GTPase mediated signal transduction;0.00105240534245647!GO:0019867;outer membrane;0.00112169194499592!GO:0030137;COPI-coated vesicle;0.00113152505775366!GO:0043681;protein import into mitochondrion;0.00114742175148011!GO:0051920;peroxiredoxin activity;0.00114742175148011!GO:0051128;regulation of cellular component organization and biogenesis;0.00115658773849698!GO:0051325;interphase;0.00118538178194323!GO:0031968;organelle outer membrane;0.00121224965502302!GO:0006350;transcription;0.00123575878144173!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00123575878144173!GO:0000139;Golgi membrane;0.00126697713175146!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00129493684330224!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00129493684330224!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00129493684330224!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00129493684330224!GO:0030027;lamellipodium;0.00129539902340681!GO:0031323;regulation of cellular metabolic process;0.00137765405411661!GO:0006626;protein targeting to mitochondrion;0.00139930845024368!GO:0033673;negative regulation of kinase activity;0.00141190029685145!GO:0006469;negative regulation of protein kinase activity;0.00141190029685145!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00155086208393103!GO:0003746;translation elongation factor activity;0.00156439256757265!GO:0004004;ATP-dependent RNA helicase activity;0.00157125168403743!GO:0018196;peptidyl-asparagine modification;0.00161138607688508!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00161138607688508!GO:0006891;intra-Golgi vesicle-mediated transport;0.00176154805157673!GO:0005773;vacuole;0.00181355890416644!GO:0005815;microtubule organizing center;0.0018696822500206!GO:0051252;regulation of RNA metabolic process;0.00210798902436973!GO:0043488;regulation of mRNA stability;0.00213932239654772!GO:0043487;regulation of RNA stability;0.00213932239654772!GO:0045892;negative regulation of transcription, DNA-dependent;0.00213932239654772!GO:0051348;negative regulation of transferase activity;0.00220448640741981!GO:0046474;glycerophospholipid biosynthetic process;0.00222638362697509!GO:0019843;rRNA binding;0.00224362918432917!GO:0030521;androgen receptor signaling pathway;0.00226245060750397!GO:0015631;tubulin binding;0.00230698624662581!GO:0048500;signal recognition particle;0.00241939021882673!GO:0005581;collagen;0.00244282877587624!GO:0005874;microtubule;0.0025026913046017!GO:0035258;steroid hormone receptor binding;0.00253010866455636!GO:0006402;mRNA catabolic process;0.00255467730418119!GO:0006695;cholesterol biosynthetic process;0.00261922712579326!GO:0030880;RNA polymerase complex;0.0026522544816226!GO:0003690;double-stranded DNA binding;0.00277150276277185!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00295203070465254!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00306300413614817!GO:0045941;positive regulation of transcription;0.00311303690186021!GO:0007050;cell cycle arrest;0.00312704420547364!GO:0031072;heat shock protein binding;0.00313037805597874!GO:0001726;ruffle;0.00317630981655882!GO:0044452;nucleolar part;0.00340303720531075!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00341148134482045!GO:0003702;RNA polymerase II transcription factor activity;0.00352747858300555!GO:0051101;regulation of DNA binding;0.00352747858300555!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00381846219148305!GO:0030134;ER to Golgi transport vesicle;0.0039670480728584!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00405351862771296!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00406139904719204!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00425965971128825!GO:0051087;chaperone binding;0.00451117591788382!GO:0005741;mitochondrial outer membrane;0.00451117591788382!GO:0007006;mitochondrial membrane organization and biogenesis;0.00451117591788382!GO:0009165;nucleotide biosynthetic process;0.00451117591788382!GO:0055003;cardiac myofibril assembly;0.0047600583600396!GO:0055013;cardiac muscle cell development;0.0047600583600396!GO:0010468;regulation of gene expression;0.00483940937845209!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00483940937845209!GO:0033043;regulation of organelle organization and biogenesis;0.00483940937845209!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00507200496881579!GO:0005523;tropomyosin binding;0.00517690439184953!GO:0000049;tRNA binding;0.00521889913763451!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00533479856398126!GO:0000428;DNA-directed RNA polymerase complex;0.00533479856398126!GO:0008154;actin polymerization and/or depolymerization;0.00539403639338088!GO:0031124;mRNA 3'-end processing;0.00540681092192895!GO:0005657;replication fork;0.00550404427803712!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00578688367178212!GO:0045047;protein targeting to ER;0.00578688367178212!GO:0008312;7S RNA binding;0.00590140976237427!GO:0030127;COPII vesicle coat;0.00600509983410247!GO:0012507;ER to Golgi transport vesicle membrane;0.00600509983410247!GO:0051287;NAD binding;0.00602423235422622!GO:0006383;transcription from RNA polymerase III promoter;0.00610705629593564!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00613510751008146!GO:0048471;perinuclear region of cytoplasm;0.00616419677923646!GO:0045893;positive regulation of transcription, DNA-dependent;0.00619426173435038!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00619426173435038!GO:0015002;heme-copper terminal oxidase activity;0.00619426173435038!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00619426173435038!GO:0004129;cytochrome-c oxidase activity;0.00619426173435038!GO:0006595;polyamine metabolic process;0.0063526528004191!GO:0017166;vinculin binding;0.00652427834714333!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00658440480924784!GO:0007265;Ras protein signal transduction;0.006658937275824!GO:0006839;mitochondrial transport;0.00690984271507182!GO:0000059;protein import into nucleus, docking;0.00702387197056702!GO:0030176;integral to endoplasmic reticulum membrane;0.0070518755228892!GO:0015992;proton transport;0.00707553888646145!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00709641259186809!GO:0005684;U2-dependent spliceosome;0.00714337095669501!GO:0005586;collagen type III;0.00732608663068296!GO:0030118;clathrin coat;0.00733589208064971!GO:0006509;membrane protein ectodomain proteolysis;0.00736116465512094!GO:0033619;membrane protein proteolysis;0.00736116465512094!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00747546384725858!GO:0005583;fibrillar collagen;0.00747546384725858!GO:0005819;spindle;0.00747824248397634!GO:0000323;lytic vacuole;0.007588966863373!GO:0005764;lysosome;0.007588966863373!GO:0048741;skeletal muscle fiber development;0.00759603034830999!GO:0048747;muscle fiber development;0.00759603034830999!GO:0030132;clathrin coat of coated pit;0.00789326713952284!GO:0048487;beta-tubulin binding;0.00806189165081712!GO:0000786;nucleosome;0.00817141376401568!GO:0006650;glycerophospholipid metabolic process;0.00819542177321988!GO:0030658;transport vesicle membrane;0.00836443947567134!GO:0006818;hydrogen transport;0.00863354306858602!GO:0031418;L-ascorbic acid binding;0.00863354306858602!GO:0005862;muscle thin filament tropomyosin;0.00866929711233737!GO:0016787;hydrolase activity;0.00871646674497168!GO:0001527;microfibril;0.00947784163772569!GO:0016251;general RNA polymerase II transcription factor activity;0.00951056018547556!GO:0046483;heterocycle metabolic process;0.00967849691337239!GO:0006352;transcription initiation;0.00980902145655566!GO:0065009;regulation of a molecular function;0.00992200652481642!GO:0000339;RNA cap binding;0.0102739962497988!GO:0003682;chromatin binding;0.0104308920865262!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0104762601366012!GO:0016197;endosome transport;0.010758607441381!GO:0006261;DNA-dependent DNA replication;0.0108654638018224!GO:0008180;signalosome;0.01097093108104!GO:0022890;inorganic cation transmembrane transporter activity;0.01097093108104!GO:0051098;regulation of binding;0.0111934419365695!GO:0008139;nuclear localization sequence binding;0.0112046059779673!GO:0050681;androgen receptor binding;0.0112278116698769!GO:0005869;dynactin complex;0.0116428102806868!GO:0006401;RNA catabolic process;0.0117785405732084!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0117797199016521!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0117797199016521!GO:0003711;transcription elongation regulator activity;0.0121330587769471!GO:0030041;actin filament polymerization;0.0122345057056853!GO:0044262;cellular carbohydrate metabolic process;0.0124166146774765!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0125340985928793!GO:0031901;early endosome membrane;0.0127900316091103!GO:0003756;protein disulfide isomerase activity;0.0130197207740596!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0130197207740596!GO:0006897;endocytosis;0.0131140675886646!GO:0010324;membrane invagination;0.0131140675886646!GO:0048468;cell development;0.0132446074764735!GO:0007179;transforming growth factor beta receptor signaling pathway;0.013262710422582!GO:0005832;chaperonin-containing T-complex;0.0133822045493436!GO:0043022;ribosome binding;0.013561300451533!GO:0008610;lipid biosynthetic process;0.0135840736803883!GO:0007051;spindle organization and biogenesis;0.0137683912963653!GO:0046489;phosphoinositide biosynthetic process;0.0138207202895847!GO:0016408;C-acyltransferase activity;0.0142336443255465!GO:0007243;protein kinase cascade;0.0147605861974336!GO:0003684;damaged DNA binding;0.0149259677096488!GO:0008033;tRNA processing;0.0149259677096488!GO:0030518;steroid hormone receptor signaling pathway;0.0150556126051227!GO:0006979;response to oxidative stress;0.0150790410624761!GO:0006405;RNA export from nucleus;0.0150790410624761!GO:0051539;4 iron, 4 sulfur cluster binding;0.0155015951376679!GO:0008047;enzyme activator activity;0.0155015951376679!GO:0008286;insulin receptor signaling pathway;0.0156174808244117!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0165113871471157!GO:0006740;NADPH regeneration;0.0166786565261989!GO:0006098;pentose-phosphate shunt;0.0166786565261989!GO:0003678;DNA helicase activity;0.0169069373327154!GO:0000902;cell morphogenesis;0.0176236805167728!GO:0032989;cellular structure morphogenesis;0.0176236805167728!GO:0016584;nucleosome positioning;0.0178422185939912!GO:0048522;positive regulation of cellular process;0.0179173842341479!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0180797607161133!GO:0001952;regulation of cell-matrix adhesion;0.0181568957752389!GO:0031970;organelle envelope lumen;0.0182130309191232!GO:0040008;regulation of growth;0.0188847609709332!GO:0030660;Golgi-associated vesicle membrane;0.0196452466493596!GO:0004177;aminopeptidase activity;0.0198792427734878!GO:0032774;RNA biosynthetic process;0.0202103201283628!GO:0005758;mitochondrial intermembrane space;0.0203654965544475!GO:0031123;RNA 3'-end processing;0.0204403324162013!GO:0032535;regulation of cellular component size;0.020733657001421!GO:0042802;identical protein binding;0.0208008080247455!GO:0031529;ruffle organization and biogenesis;0.0208008080247455!GO:0006351;transcription, DNA-dependent;0.0208008080247455!GO:0031543;peptidyl-proline dioxygenase activity;0.0208008080247455!GO:0008629;induction of apoptosis by intracellular signals;0.0211072215223632!GO:0019798;procollagen-proline dioxygenase activity;0.0212806712549247!GO:0008320;protein transmembrane transporter activity;0.0213039420884771!GO:0016272;prefoldin complex;0.0214276997534747!GO:0030031;cell projection biogenesis;0.0214276997534747!GO:0030032;lamellipodium biogenesis;0.0214276997534747!GO:0035035;histone acetyltransferase binding;0.0224855536881477!GO:0005637;nuclear inner membrane;0.02252405321535!GO:0046467;membrane lipid biosynthetic process;0.02252405321535!GO:0006720;isoprenoid metabolic process;0.0230258737788035!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0234226528253434!GO:0000209;protein polyubiquitination;0.023546778243837!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.023822013253241!GO:0015399;primary active transmembrane transporter activity;0.023822013253241!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0243778321026322!GO:0031674;I band;0.0243778321026322!GO:0030832;regulation of actin filament length;0.0244854308606286!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0250081272740939!GO:0006376;mRNA splice site selection;0.0256820637677015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256820637677015!GO:0008147;structural constituent of bone;0.0269276118002843!GO:0000096;sulfur amino acid metabolic process;0.0278364439273023!GO:0008652;amino acid biosynthetic process;0.0279788865273872!GO:0009303;rRNA transcription;0.0279788865273872!GO:0017022;myosin binding;0.0282933047966228!GO:0008022;protein C-terminus binding;0.0282947114933576!GO:0051540;metal cluster binding;0.0284065938117026!GO:0051536;iron-sulfur cluster binding;0.0284065938117026!GO:0006338;chromatin remodeling;0.0284557177525123!GO:0000792;heterochromatin;0.0288775372559915!GO:0006302;double-strand break repair;0.0292326701709765!GO:0006778;porphyrin metabolic process;0.0293903319232446!GO:0033013;tetrapyrrole metabolic process;0.0293903319232446!GO:0040029;regulation of gene expression, epigenetic;0.0294899652720589!GO:0032984;macromolecular complex disassembly;0.0298082669410025!GO:0006892;post-Golgi vesicle-mediated transport;0.0300627370098632!GO:0043624;cellular protein complex disassembly;0.0305847076247868!GO:0050811;GABA receptor binding;0.0311874602941345!GO:0006984;ER-nuclear signaling pathway;0.0311874602941345!GO:0006144;purine base metabolic process;0.031300420249415!GO:0005588;collagen type V;0.0325012544652968!GO:0007160;cell-matrix adhesion;0.0325012544652968!GO:0000082;G1/S transition of mitotic cell cycle;0.0325574260295739!GO:0000075;cell cycle checkpoint;0.0334153887323127!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0335435539842848!GO:0031589;cell-substrate adhesion;0.0340035233875661!GO:0007030;Golgi organization and biogenesis;0.0341230497010759!GO:0008538;proteasome activator activity;0.035321332824386!GO:0032507;maintenance of cellular protein localization;0.0353466785817225!GO:0005669;transcription factor TFIID complex;0.0353965579937429!GO:0005096;GTPase activator activity;0.0354032843547295!GO:0006611;protein export from nucleus;0.0355727651611938!GO:0030833;regulation of actin filament polymerization;0.0358837811375995!GO:0032780;negative regulation of ATPase activity;0.0365152805722279!GO:0000228;nuclear chromosome;0.0367924245967802!GO:0007052;mitotic spindle organization and biogenesis;0.0369443689104497!GO:0032508;DNA duplex unwinding;0.0369617188599332!GO:0032392;DNA geometric change;0.0369617188599332!GO:0045445;myoblast differentiation;0.036970242125633!GO:0005861;troponin complex;0.0371663740579749!GO:0008094;DNA-dependent ATPase activity;0.0378455164576715!GO:0019752;carboxylic acid metabolic process;0.0382316575026985!GO:0004674;protein serine/threonine kinase activity;0.0382837445217361!GO:0045449;regulation of transcription;0.039055045017705!GO:0008097;5S rRNA binding;0.039055045017705!GO:0007021;tubulin folding;0.039055045017705!GO:0009112;nucleobase metabolic process;0.0393941110163068!GO:0043407;negative regulation of MAP kinase activity;0.0401989014645553!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0406435294581286!GO:0030508;thiol-disulfide exchange intermediate activity;0.0406435294581286!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0408756318333369!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0408756318333369!GO:0006082;organic acid metabolic process;0.041220927748042!GO:0030659;cytoplasmic vesicle membrane;0.0416845570860429!GO:0042585;germinal vesicle;0.0417222233199629!GO:0031902;late endosome membrane;0.0418723387486291!GO:0006289;nucleotide-excision repair;0.0421974340396282!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0422786217656975!GO:0008632;apoptotic program;0.042819256949829!GO:0005784;translocon complex;0.0432201282880016!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0432201282880016!GO:0055083;monovalent inorganic anion homeostasis;0.0432201282880016!GO:0055064;chloride ion homeostasis;0.0432201282880016!GO:0030644;cellular chloride ion homeostasis;0.0432201282880016!GO:0030145;manganese ion binding;0.0433040374375644!GO:0000776;kinetochore;0.0439740651159777!GO:0004860;protein kinase inhibitor activity;0.0442176723091701!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0447250855352727!GO:0006378;mRNA polyadenylation;0.0447346806912678!GO:0016741;transferase activity, transferring one-carbon groups;0.0458214878173574!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0459144300937542!GO:0006596;polyamine biosynthetic process;0.0459646134644798!GO:0007266;Rho protein signal transduction;0.0460412501865286!GO:0045098;type III intermediate filament;0.0467527360553508!GO:0006779;porphyrin biosynthetic process;0.0470309729392341!GO:0033014;tetrapyrrole biosynthetic process;0.0470309729392341!GO:0003923;GPI-anchor transamidase activity;0.0470309729392341!GO:0016255;attachment of GPI anchor to protein;0.0470309729392341!GO:0042765;GPI-anchor transamidase complex;0.0470309729392341!GO:0043241;protein complex disassembly;0.0475466898207406!GO:0031625;ubiquitin protein ligase binding;0.0475466898207406!GO:0030119;AP-type membrane coat adaptor complex;0.047750396431764!GO:0045045;secretory pathway;0.0479134289702793!GO:0006739;NADP metabolic process;0.0489267499643414!GO:0005100;Rho GTPase activator activity;0.0489726937039555
|sample_id=11282
|sample_id=11282
|sample_note=
|sample_note=
Line 75: Line 106:
|sample_tissue=skeletal muscle
|sample_tissue=skeletal muscle
|top_motifs=MEF2{A,B,C,D}:2.71120577662;NHLH1,2:2.6135763734;MYBL2:2.20028654538;SRF:2.14806687976;TAL1_TCF{3,4,12}:2.13823023079;TFAP4:1.98962328922;MYOD1:1.65488468771;NR6A1:1.61673324613;ZNF384:1.59679251239;HOX{A4,D4}:1.58643716452;GLI1..3:1.51861037699;ZNF238:1.43069720472;SMAD1..7,9:1.42662806961;KLF4:1.3624111371;GTF2A1,2:1.34313666657;PAX5:1.34255662443;TEAD1:1.30670924888;SOX5:1.23873601385;RXR{A,B,G}:1.23235161671;NR5A1,2:1.23027101866;SPZ1:1.20965047554;ESR1:1.20785849355;TBP:1.19140257967;NR3C1:1.1663247599;HOX{A5,B5}:1.16446495292;TGIF1:1.16293455374;SOX17:1.15799252064;IKZF1:1.14636876916;RREB1:1.11682875635;MAZ:1.09960417352;NKX3-1:1.09669653907;EVI1:1.06652832202;RXRA_VDR{dimer}:1.05682836304;LMO2:1.0371290126;ZIC1..3:1.01411611067;GFI1B:1.01207920302;NKX6-1,2:1.01166525221;PATZ1:1.00322353158;GATA4:0.97054622586;LHX3,4:0.969247795679;TFCP2:0.959938526639;MZF1:0.950025240001;MAFB:0.941329083831;HAND1,2:0.933120668282;HSF1,2:0.925879602665;FOXL1:0.919761870032;GCM1,2:0.896919195441;NFIX:0.873206969009;ALX4:0.869704917593;TLX1..3_NFIC{dimer}:0.847306244678;EN1,2:0.839052373821;GTF2I:0.821670202257;UFEwm:0.786617654427;NFATC1..3:0.739227705113;ZNF148:0.733464370429;PRDM1:0.698612587067;YY1:0.640223176974;MYFfamily:0.623054263847;SOX2:0.621914824609;POU3F1..4:0.57831507768;TP53:0.573303180922;FOXM1:0.551463006522;PAX4:0.537330542431;TFAP2{A,C}:0.520983690162;TFAP2B:0.516428965653;ZNF143:0.50900766992;T:0.498456264019;PAX3,7:0.49622295814;NANOG{mouse}:0.478384843222;NKX2-3_NKX2-5:0.474680331037;MTE{core}:0.473359533525;NKX2-1,4:0.467495787394;HIC1:0.46523218423;DBP:0.452824692015;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.449763269384;HES1:0.432610544443;MED-1{core}:0.423808210426;TOPORS:0.406356057481;HMX1:0.402956906926;GFI1:0.382838543258;TBX4,5:0.360877484789;SOX{8,9,10}:0.32534489781;PAX1,9:0.31034089087;RBPJ:0.305451433926;NR1H4:0.269856725332;EGR1..3:0.265359832295;SP1:0.261117001019;HMGA1,2:0.242700226801;EBF1:0.234709216388;XCPE1{core}:0.22457422825;LEF1_TCF7_TCF7L1,2:0.207945766427;NFE2L2:0.189262437513;EP300:0.183789482079;HOX{A6,A7,B6,B7}:0.149322711683;NRF1:0.138343742177;IKZF2:0.137712412708;POU6F1:0.118381356573;PAX8:0.116895451341;REST:0.110978558512;CRX:0.0892830941168;E2F1..5:0.0886002527124;NFY{A,B,C}:0.0837418343607;CDC5L:0.0746562104171;DMAP1_NCOR{1,2}_SMARC:0.0726489496978;FOSL2:0.0614358670038;GZF1:0.0563687674964;ELK1,4_GABP{A,B1}:0.0553012741249;POU5F1:0.0363467480679;CUX2:0.0310570331574;FOXD3:0.0251200845813;RFX2..5_RFXANK_RFXAP:0.011982980989;ZNF423:0.00974159395744;NFIL3:0.00637994296536;STAT1,3:0.00414974679593;NKX3-2:-0.0265370088193;ADNP_IRX_SIX_ZHX:-0.037209496155;JUN:-0.0393840477352;HLF:-0.0512829409089;RUNX1..3:-0.0579487296809;STAT5{A,B}:-0.0682662826404;RFX1:-0.0701756848208;AIRE:-0.0784235894739;STAT2,4,6:-0.0795490719408;HIF1A:-0.0974831147858;FOXO1,3,4:-0.101436068453;PAX2:-0.106275405883;ZBTB6:-0.118780130963;AHR_ARNT_ARNT2:-0.139460845007;IRF1,2:-0.149635636588;ZFP161:-0.161165279796;FOXA2:-0.170409623413;SNAI1..3:-0.179400860774;ATF2:-0.182412366274;TEF:-0.192707936548;TFDP1:-0.204287133352;ESRRA:-0.205321789359;HNF1A:-0.205636720317;BACH2:-0.221070660555;FOS_FOS{B,L1}_JUN{B,D}:-0.238688202834;ATF6:-0.249611051054;NFE2L1:-0.26543266749;CDX1,2,4:-0.270825481235;MYB:-0.279581967219;OCT4_SOX2{dimer}:-0.284797287121;AR:-0.289269948063;NKX2-2,8:-0.295458095463;VSX1,2:-0.303514947583;CEBPA,B_DDIT3:-0.305472266366;PRRX1,2:-0.308412665024;FOXP3:-0.308563206757;IRF7:-0.310242399459;TLX2:-0.331537104591;bHLH_family:-0.374970221646;RORA:-0.39137105125;PAX6:-0.406650798823;FOXP1:-0.417000152014;PDX1:-0.419101303096;HNF4A_NR2F1,2:-0.424770537105;NFE2:-0.440061981297;NFKB1_REL_RELA:-0.448425584264;CREB1:-0.491215021963;XBP1:-0.495965317536;ATF4:-0.539091441671;PBX1:-0.571982256991;BPTF:-0.583978697616;SPI1:-0.59506731194;PITX1..3:-0.607964888656;MTF1:-0.608544536809;ALX1:-0.61263084638;POU1F1:-0.632157752969;ELF1,2,4:-0.649687475136;FOX{F1,F2,J1}:-0.649933288837;HBP1_HMGB_SSRP1_UBTF:-0.650384654273;SREBF1,2:-0.656214728787;ONECUT1,2:-0.663857266534;FOXQ1:-0.716156072143;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.736060334994;SPIB:-0.747288771959;PPARG:-0.754454868085;NANOG:-0.765870742337;BREu{core}:-0.767512876459;ETS1,2:-0.816608798673;GATA6:-0.837992584154;FOXN1:-0.851422892649;HOXA9_MEIS1:-0.908891184194;FOX{D1,D2}:-0.919394379143;ZEB1:-0.928612605697;ATF5_CREB3:-0.99273986523;POU2F1..3:-1.00782637758;FOX{I1,J2}:-1.19060989615;ZBTB16:-1.2543246159;ARID5B:-1.26478216539
|top_motifs=MEF2{A,B,C,D}:2.71120577662;NHLH1,2:2.6135763734;MYBL2:2.20028654538;SRF:2.14806687976;TAL1_TCF{3,4,12}:2.13823023079;TFAP4:1.98962328922;MYOD1:1.65488468771;NR6A1:1.61673324613;ZNF384:1.59679251239;HOX{A4,D4}:1.58643716452;GLI1..3:1.51861037699;ZNF238:1.43069720472;SMAD1..7,9:1.42662806961;KLF4:1.3624111371;GTF2A1,2:1.34313666657;PAX5:1.34255662443;TEAD1:1.30670924888;SOX5:1.23873601385;RXR{A,B,G}:1.23235161671;NR5A1,2:1.23027101866;SPZ1:1.20965047554;ESR1:1.20785849355;TBP:1.19140257967;NR3C1:1.1663247599;HOX{A5,B5}:1.16446495292;TGIF1:1.16293455374;SOX17:1.15799252064;IKZF1:1.14636876916;RREB1:1.11682875635;MAZ:1.09960417352;NKX3-1:1.09669653907;EVI1:1.06652832202;RXRA_VDR{dimer}:1.05682836304;LMO2:1.0371290126;ZIC1..3:1.01411611067;GFI1B:1.01207920302;NKX6-1,2:1.01166525221;PATZ1:1.00322353158;GATA4:0.97054622586;LHX3,4:0.969247795679;TFCP2:0.959938526639;MZF1:0.950025240001;MAFB:0.941329083831;HAND1,2:0.933120668282;HSF1,2:0.925879602665;FOXL1:0.919761870032;GCM1,2:0.896919195441;NFIX:0.873206969009;ALX4:0.869704917593;TLX1..3_NFIC{dimer}:0.847306244678;EN1,2:0.839052373821;GTF2I:0.821670202257;UFEwm:0.786617654427;NFATC1..3:0.739227705113;ZNF148:0.733464370429;PRDM1:0.698612587067;YY1:0.640223176974;MYFfamily:0.623054263847;SOX2:0.621914824609;POU3F1..4:0.57831507768;TP53:0.573303180922;FOXM1:0.551463006522;PAX4:0.537330542431;TFAP2{A,C}:0.520983690162;TFAP2B:0.516428965653;ZNF143:0.50900766992;T:0.498456264019;PAX3,7:0.49622295814;NANOG{mouse}:0.478384843222;NKX2-3_NKX2-5:0.474680331037;MTE{core}:0.473359533525;NKX2-1,4:0.467495787394;HIC1:0.46523218423;DBP:0.452824692015;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.449763269384;HES1:0.432610544443;MED-1{core}:0.423808210426;TOPORS:0.406356057481;HMX1:0.402956906926;GFI1:0.382838543258;TBX4,5:0.360877484789;SOX{8,9,10}:0.32534489781;PAX1,9:0.31034089087;RBPJ:0.305451433926;NR1H4:0.269856725332;EGR1..3:0.265359832295;SP1:0.261117001019;HMGA1,2:0.242700226801;EBF1:0.234709216388;XCPE1{core}:0.22457422825;LEF1_TCF7_TCF7L1,2:0.207945766427;NFE2L2:0.189262437513;EP300:0.183789482079;HOX{A6,A7,B6,B7}:0.149322711683;NRF1:0.138343742177;IKZF2:0.137712412708;POU6F1:0.118381356573;PAX8:0.116895451341;REST:0.110978558512;CRX:0.0892830941168;E2F1..5:0.0886002527124;NFY{A,B,C}:0.0837418343607;CDC5L:0.0746562104171;DMAP1_NCOR{1,2}_SMARC:0.0726489496978;FOSL2:0.0614358670038;GZF1:0.0563687674964;ELK1,4_GABP{A,B1}:0.0553012741249;POU5F1:0.0363467480679;CUX2:0.0310570331574;FOXD3:0.0251200845813;RFX2..5_RFXANK_RFXAP:0.011982980989;ZNF423:0.00974159395744;NFIL3:0.00637994296536;STAT1,3:0.00414974679593;NKX3-2:-0.0265370088193;ADNP_IRX_SIX_ZHX:-0.037209496155;JUN:-0.0393840477352;HLF:-0.0512829409089;RUNX1..3:-0.0579487296809;STAT5{A,B}:-0.0682662826404;RFX1:-0.0701756848208;AIRE:-0.0784235894739;STAT2,4,6:-0.0795490719408;HIF1A:-0.0974831147858;FOXO1,3,4:-0.101436068453;PAX2:-0.106275405883;ZBTB6:-0.118780130963;AHR_ARNT_ARNT2:-0.139460845007;IRF1,2:-0.149635636588;ZFP161:-0.161165279796;FOXA2:-0.170409623413;SNAI1..3:-0.179400860774;ATF2:-0.182412366274;TEF:-0.192707936548;TFDP1:-0.204287133352;ESRRA:-0.205321789359;HNF1A:-0.205636720317;BACH2:-0.221070660555;FOS_FOS{B,L1}_JUN{B,D}:-0.238688202834;ATF6:-0.249611051054;NFE2L1:-0.26543266749;CDX1,2,4:-0.270825481235;MYB:-0.279581967219;OCT4_SOX2{dimer}:-0.284797287121;AR:-0.289269948063;NKX2-2,8:-0.295458095463;VSX1,2:-0.303514947583;CEBPA,B_DDIT3:-0.305472266366;PRRX1,2:-0.308412665024;FOXP3:-0.308563206757;IRF7:-0.310242399459;TLX2:-0.331537104591;bHLH_family:-0.374970221646;RORA:-0.39137105125;PAX6:-0.406650798823;FOXP1:-0.417000152014;PDX1:-0.419101303096;HNF4A_NR2F1,2:-0.424770537105;NFE2:-0.440061981297;NFKB1_REL_RELA:-0.448425584264;CREB1:-0.491215021963;XBP1:-0.495965317536;ATF4:-0.539091441671;PBX1:-0.571982256991;BPTF:-0.583978697616;SPI1:-0.59506731194;PITX1..3:-0.607964888656;MTF1:-0.608544536809;ALX1:-0.61263084638;POU1F1:-0.632157752969;ELF1,2,4:-0.649687475136;FOX{F1,F2,J1}:-0.649933288837;HBP1_HMGB_SSRP1_UBTF:-0.650384654273;SREBF1,2:-0.656214728787;ONECUT1,2:-0.663857266534;FOXQ1:-0.716156072143;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.736060334994;SPIB:-0.747288771959;PPARG:-0.754454868085;NANOG:-0.765870742337;BREu{core}:-0.767512876459;ETS1,2:-0.816608798673;GATA6:-0.837992584154;FOXN1:-0.851422892649;HOXA9_MEIS1:-0.908891184194;FOX{D1,D2}:-0.919394379143;ZEB1:-0.928612605697;ATF5_CREB3:-0.99273986523;POU2F1..3:-1.00782637758;FOX{I1,J2}:-1.19060989615;ZBTB16:-1.2543246159;ARID5B:-1.26478216539
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11282-116I4;search_select_hide=table117:FF:11282-116I4
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11084
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stage22 weeks old fetus
sexunknown
ageembryo 22week
cell typeskeletal muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1424
catalog numberCA150D-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004973
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11084 CAGE DRX008461 DRR009333
Accession ID Hg19

Library idBAMCTSS
CNhs11084 DRZ000758 DRZ002143
Accession ID Hg38

Library idBAMCTSS
CNhs11084 DRZ012108 DRZ013493
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10050downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004973
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTAGAG sRNA-Seq DRX037047 DRR041413
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTAGAG DRZ007055


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.053
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0155
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.52
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0712
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0.777
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.744
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00813
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0902
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.132
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.52
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.183
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.192
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.037
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.676
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0385
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00569
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.037
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.103
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00667
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0304
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0125
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.037
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.132
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.037
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.659
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.575
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.4
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.037
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.245
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.037
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.737
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.458
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.037
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11084

Jaspar motifP-value
MA0002.20.124
MA0003.10.172
MA0004.10.191
MA0006.10.451
MA0007.10.0467
MA0009.10.0196
MA0014.10.633
MA0017.10.109
MA0018.20.0383
MA0019.10.0849
MA0024.10.651
MA0025.10.111
MA0027.10.378
MA0028.10.0315
MA0029.10.413
MA0030.10.137
MA0031.10.018
MA0035.20.0398
MA0038.10.288
MA0039.20.0762
MA0040.10.667
MA0041.10.534
MA0042.10.587
MA0043.10.0114
MA0046.10.288
MA0047.20.00638
MA0048.10.00815
MA0050.10.00113
MA0051.10.0184
MA0052.13.93849e-10
MA0055.15.03024e-4
MA0057.10.922
MA0058.10.0942
MA0059.10.576
MA0060.10.854
MA0061.14.76641e-4
MA0062.26.44404e-8
MA0065.20.317
MA0066.10.489
MA0067.10.012
MA0068.10.0579
MA0069.10.0587
MA0070.10.0906
MA0071.10.778
MA0072.10.634
MA0073.10.639
MA0074.10.447
MA0076.10.0372
MA0077.10.378
MA0078.10.701
MA0079.20.925
MA0080.27.13863e-13
MA0081.10.00357
MA0083.11.58161e-5
MA0084.10.116
MA0087.10.286
MA0088.10.833
MA0090.10.00193
MA0091.11.85543e-11
MA0092.10.706
MA0093.10.235
MA0099.21.88129e-4
MA0100.10.578
MA0101.17.2659e-5
MA0102.20.00971
MA0103.10.0118
MA0104.20.165
MA0105.10.00238
MA0106.10.408
MA0107.12.16562e-4
MA0108.22.46192e-13
MA0111.10.362
MA0112.20.0329
MA0113.10.224
MA0114.10.26
MA0115.10.302
MA0116.10.00789
MA0117.10.399
MA0119.10.475
MA0122.10.506
MA0124.10.697
MA0125.10.401
MA0131.10.237
MA0135.10.124
MA0136.11.2546e-15
MA0137.20.194
MA0138.20.872
MA0139.10.397
MA0140.10.0629
MA0141.10.626
MA0142.10.138
MA0143.10.618
MA0144.10.11
MA0145.10.0127
MA0146.10.312
MA0147.10.302
MA0148.10.00483
MA0149.10.0739
MA0150.11.58935e-4
MA0152.10.00585
MA0153.10.531
MA0154.10.389
MA0155.10.0281
MA0156.11.69171e-14
MA0157.10.0271
MA0159.10.672
MA0160.10.0353
MA0162.10.183
MA0163.10.825
MA0164.10.605
MA0258.10.834
MA0259.10.642



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11084

Novel motifP-value
10.397
100.0288
1000.946
1010.651
1020.616
1030.195
1040.374
1050.819
1060.232
1070.252
1080.437
1090.32
110.794
1100.705
1110.669
1120.225
1136.19584e-5
1140.576
1150.982
1160.234
1170.154
1180.0795
1190.863
120.645
1200.358
1210.62
1220.0483
1231.31115e-4
1240.108
1250.321
1260.558
1270.422
1280.496
1290.691
130.93
1300.327
1310.0849
1320.501
1330.653
1340.0643
1350.963
1360.0589
1370.266
1380.217
1390.784
140.772
1400.161
1410.0951
1420.987
1430.194
1440.427
1450.57
1460.867
1470.0947
1480.304
1490.0417
150.11
1500.902
1510.837
1520.218
1530.365
1540.484
1550.00555
1560.321
1570.58
1580.0777
1590.876
160.316
1600.735
1610.779
1620.0635
1630.65
1640.159
1650.71
1660.426
1670.025
1680.693
1690.0248
170.971
180.932
190.0355
20.152
200.0831
210.341
220.204
230.892
240.571
250.532
260.297
270.567
280.27
290.157
30.355
300.248
310.888
321.08339e-9
330.259
340.58
350.478
360.151
370.932
380.447
390.227
40.72
400.0791
410.0729
420.401
430.558
440.818
450.577
460.991
470.546
480.746
490.393
50.832
500.439
510.829
520.881
530.656
540.801
550.857
560.876
570.605
580.168
590.597
60.833
600.513
610.47
620.555
630.9
640.508
650.818
660.585
670.823
680.799
690.904
70.742
700.351
710.118
720.197
730.594
740.417
750.251
760.0354
770.632
780.458
790.0113
80.937
800.647
810.379
820.875
830.272
840.592
850.947
860.697
870.222
880.713
890.194
90.198
900.323
910.895
920.891
930.659
940.522
950.0859
960.822
970.775
980.119
990.00294



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11084


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
0104975 (human myotube cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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