FFCP PHASE1:Mm9::chrX:71002408..71002450,+: Difference between revisions
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m (moved FFCP PHASE1 mm9::chrX:71002408..71002450,+ to FFCP PHASE1:Mm9::chrX:71002408..71002450,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=140571 | |EntrezGene=140571 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=786 | |||
|TSSclassifier=NA | |||
|UniProt=A2AFF9 | |UniProt=A2AFF9 | ||
|association_with_transcript=0bp_to_ENSMUST00000002079,ENSMUST00000146812,ENSMUST00000147127,ENSMUST00000149478,NM_019587_5end | |||
|cluster_id=chrX:71002408..71002450,+ | |||
|description=CAGE_peak_1_at_Plxnb3_5end | |||
|id=chrX:71002408..71002450,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.46e-10,44;CL:0000133,3.46e-10,44;CL:0002319,1.99e-09,43;CL:0000107,2.50e-09,9;CL:0000540,3.06e-09,33;CL:0000047,3.06e-09,33;CL:0000031,3.06e-09,33;CL:0000404,3.06e-09,33;CL:0000393,6.98e-07,39;CL:0000211,6.98e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.88e-20!102;UBERON:0000924!5.88e-20!102;UBERON:0006601!5.88e-20!102;UBERON:0000073!6.43e-17!75;UBERON:0001016!6.43e-17!75;UBERON:0001017!8.46e-16!73;UBERON:0005743!8.46e-16!73;UBERON:0002346!2.29e-13!71;UBERON:0003075!2.29e-13!71;UBERON:0007284!2.29e-13!71;UBERON:0000033!1.67e-10!63;UBERON:0001049!8.55e-10!52;UBERON:0005068!8.55e-10!52;UBERON:0006241!8.55e-10!52;UBERON:0007135!8.55e-10!52;UBERON:0000955!3.28e-09!50;UBERON:0006238!3.28e-09!50;UBERON:0002616!9.81e-09!49;UBERON:0000010!1.40e-07!11;UBERON:0002021!7.28e-07!10;UBERON:0000411!7.28e-07!10;UBERON:0001950!7.28e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.60e-24,75;UBERON:0004121,1.70e-22,95;UBERON:0000924,1.70e-22,95;UBERON:0006601,1.70e-22,95;UBERON:0001017,3.48e-22,73;UBERON:0010371,9.80e-14,73;UBERON:0000073,1.78e-13,54;UBERON:0002346,2.35e-12,64;UBERON:0003075,2.35e-12,64;UBERON:0007284,2.35e-12,64;UBERON:0001049,4.66e-12,52;UBERON:0005068,4.66e-12,52;UBERON:0006241,4.66e-12,52;UBERON:0007135,4.66e-12,52;UBERON:0000010,4.29e-11,11;UBERON:0010314,3.17e-10,92;UBERON:0002021,5.75e-10,10;UBERON:0000411,5.75e-10,10;UBERON:0001950,5.75e-10,10;UBERON:0000955,1.70e-09,47;UBERON:0006238,1.70e-09,47;UBERON:0002410,2.50e-09,9;UBERON:0002616,7.64e-09,46;UBERON:0002020,8.34e-09,34;UBERON:0003076,2.12e-07,12;UBERON:0003057,2.12e-07,12;UBERON:0003080,9.82e-07,40 | |||
|phase1_expression=3.68342348341026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.279972843250725,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0.889294796111139,0,0,0,14.3808053048834,7.68436610643109,0.103689612308478,0,0,21.7094748146891,23.1911967999194,0.122490799214954,0.0958454710182364,0,9.91042928994498,17.2377906415003,14.5926206593431,0,0.0914876436024097,0,22.3346399201105,5.06486349028512,16.9606055032259,6.77645746589436,5.83723891276322,0.372798891650601,2.57469057332826,26.5256175974817,0,0,0,0,0,0,0.561777680527007,0,0,0,20.9856695467254,0,0,0,0,0,0,0.11418387971906,0.517875767294343,0.29688427812965,1.21439728736295,1.21786191324856,2.53677046981664,1.20578112442098,1.29347577849275,0.502666365318702,0,0.289198713839823,0,1.45590164952668,1.10420759230197,0.969750506270444,0,12.296793474485,16.127396424636,0,0,0,0,29.2091746839404,25.1625331550245,0.251308704225729,11.4724051326902,12.0186264945255,36.5706958424826,33.0972176658226,0.203678727700633,0.124406970610093,0,0.841767423545896,0.130120442962704,0,0.360124259610698,0.30140963567143,0.204109497453984,0.896796041993948,1.40552586839593,6.98499100995342,0,0,1.05570674498369,1.09597866213787,1.39023624612799,2.43776516565517,1.23469281844766,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0.116765342367169,0.329119699826961,0.164167464079095,0.56748166682099,0.438599962275997,0.219550115291051,0.134206418760372,15.3511662451813,0.205809224758569,0,0,0.213288250535234,0,0.515469845288373,0.605050573870028,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.754005626400808,0.596869416123452,0.58489226135736,0,0,0,0,0.456994050438915,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.37898282354097,0.162964976442026,0,0.234690248288502,0,0.238043640886014,0.390267295715598,0.630540576424764,0.221464689648775,0.478364305972461,0.491589944147214,0.518054945597687,0.144649058581512,0,0,0,0,48.3257275863254,54.1517992055979,0,2.01976741763498,2.52406575533005,1.95219372148319,20.2497993868831,14.5770966751057,35.4249891791007,27.4584234865167,4.45291771842384,3.79932615284705,9.48690667071656,9.96096080907602,0.141940085208269,0.178065603667255,0.325773918707152,0,0,0,0,0,0.885905678642318,1.22974059177571,1.55056975900933,1.09060118843252,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0,0.857348140126369,0.177340233642274,0.535106452806212,0.822745103010605,3.04464949114599,0,0,0.661585194164886,0.49465875882444,0.968786560175433,1.20625849856312,1.43246812803764,2.29797259643086,0,62.8591773815628,0,0,0.185194527369712,0,0,0,0,0,0,0,0,2.43983360552218,1.29606408986162,0.627264888043406,1.52853794622324,0.809186078308924,1.81837602595739,1.04702376793612,0.777689839750757,0,0,0.448549638131936,0.496375471371293,0.194451188344048,0.129159823477731,0,0,0.2604087696879,0.209718688851422,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0.295379054349154,0,0.0762068066549998,0,0.292373642219257,0,0,1.81384306892169,0,0,0,0.965947970160952,0,0,1.50057865355346,0,6.7770221114048,11.0478056761722,12.0308057822273,8.59265911718438,8.22099023724771,6.7985450765073,11.4753825039407,4.05289082901798,5.43770890781046,7.7664046762773,0.103787347584177,0.399024873401031,0.682934423016537,0.729320151204882,0,0.367687016900028,1.33348036680969,0.824140228955577,1.92551525755089,0.505394423527595,1.01391719956096,0.754505365544305,0.749132059759059,1.40855335290712,1.14870937911227,0.476293691283074,0.927074607558844,0.77163688185482,0.824171801606613,1.17759136107518,0.342869252385415,1.24233064311536,0.476872379894642,1.0174249164263,0.941093804153306,0.761531471025089,1.28049581010941,0.789209134313529,0.950628796921032,1.12228454331548,0.949080144993393,1.37906275325789,1.22769312950907,0.77468420592983,0.578719832943424,0.999242311751784,1.87145286756327,1.71896843238639,2.86932498103265,5.29419405886837,4.86922454802885 | |phase1_expression=3.68342348341026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.279972843250725,0,0,0,0,0.257259436035947,0,0,0,0,0,0,0.889294796111139,0,0,0,14.3808053048834,7.68436610643109,0.103689612308478,0,0,21.7094748146891,23.1911967999194,0.122490799214954,0.0958454710182364,0,9.91042928994498,17.2377906415003,14.5926206593431,0,0.0914876436024097,0,22.3346399201105,5.06486349028512,16.9606055032259,6.77645746589436,5.83723891276322,0.372798891650601,2.57469057332826,26.5256175974817,0,0,0,0,0,0,0.561777680527007,0,0,0,20.9856695467254,0,0,0,0,0,0,0.11418387971906,0.517875767294343,0.29688427812965,1.21439728736295,1.21786191324856,2.53677046981664,1.20578112442098,1.29347577849275,0.502666365318702,0,0.289198713839823,0,1.45590164952668,1.10420759230197,0.969750506270444,0,12.296793474485,16.127396424636,0,0,0,0,29.2091746839404,25.1625331550245,0.251308704225729,11.4724051326902,12.0186264945255,36.5706958424826,33.0972176658226,0.203678727700633,0.124406970610093,0,0.841767423545896,0.130120442962704,0,0.360124259610698,0.30140963567143,0.204109497453984,0.896796041993948,1.40552586839593,6.98499100995342,0,0,1.05570674498369,1.09597866213787,1.39023624612799,2.43776516565517,1.23469281844766,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0.116765342367169,0.329119699826961,0.164167464079095,0.56748166682099,0.438599962275997,0.219550115291051,0.134206418760372,15.3511662451813,0.205809224758569,0,0,0.213288250535234,0,0.515469845288373,0.605050573870028,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.754005626400808,0.596869416123452,0.58489226135736,0,0,0,0,0.456994050438915,0,0.203651327845314,0,0.140271639780637,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0.37898282354097,0.162964976442026,0,0.234690248288502,0,0.238043640886014,0.390267295715598,0.630540576424764,0.221464689648775,0.478364305972461,0.491589944147214,0.518054945597687,0.144649058581512,0,0,0,0,48.3257275863254,54.1517992055979,0,2.01976741763498,2.52406575533005,1.95219372148319,20.2497993868831,14.5770966751057,35.4249891791007,27.4584234865167,4.45291771842384,3.79932615284705,9.48690667071656,9.96096080907602,0.141940085208269,0.178065603667255,0.325773918707152,0,0,0,0,0,0.885905678642318,1.22974059177571,1.55056975900933,1.09060118843252,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0.18006109403131,0,0.857348140126369,0.177340233642274,0.535106452806212,0.822745103010605,3.04464949114599,0,0,0.661585194164886,0.49465875882444,0.968786560175433,1.20625849856312,1.43246812803764,2.29797259643086,0,62.8591773815628,0,0,0.185194527369712,0,0,0,0,0,0,0,0,2.43983360552218,1.29606408986162,0.627264888043406,1.52853794622324,0.809186078308924,1.81837602595739,1.04702376793612,0.777689839750757,0,0,0.448549638131936,0.496375471371293,0.194451188344048,0.129159823477731,0,0,0.2604087696879,0.209718688851422,0,0,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0.295379054349154,0,0.0762068066549998,0,0.292373642219257,0,0,1.81384306892169,0,0,0,0.965947970160952,0,0,1.50057865355346,0,6.7770221114048,11.0478056761722,12.0308057822273,8.59265911718438,8.22099023724771,6.7985450765073,11.4753825039407,4.05289082901798,5.43770890781046,7.7664046762773,0.103787347584177,0.399024873401031,0.682934423016537,0.729320151204882,0,0.367687016900028,1.33348036680969,0.824140228955577,1.92551525755089,0.505394423527595,1.01391719956096,0.754505365544305,0.749132059759059,1.40855335290712,1.14870937911227,0.476293691283074,0.927074607558844,0.77163688185482,0.824171801606613,1.17759136107518,0.342869252385415,1.24233064311536,0.476872379894642,1.0174249164263,0.941093804153306,0.761531471025089,1.28049581010941,0.789209134313529,0.950628796921032,1.12228454331548,0.949080144993393,1.37906275325789,1.22769312950907,0.77468420592983,0.578719832943424,0.999242311751784,1.87145286756327,1.71896843238639,2.86932498103265,5.29419405886837,4.86922454802885 | ||
|short_description=p1@Plxnb3 | |||
}} | }} |
Latest revision as of 23:54, 1 October 2015
Short description: | p1@Plxnb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Plxnb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:786 |
Association with transcript: | 0bp_to_ENSMUST00000002079, ENSMUST00000146812, ENSMUST00000147127, ENSMUST00000149478, NM_019587_5end |
EntrezGene: | Plxnb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.46e-10 | 44 |
neurectodermal cell | 3.46e-10 | 44 |
neural cell | 1.99e-09 | 43 |
autonomic neuron | 2.50e-09 | 9 |
neuron | 3.06e-09 | 33 |
neuronal stem cell | 3.06e-09 | 33 |
neuroblast | 3.06e-09 | 33 |
electrically signaling cell | 3.06e-09 | 33 |
electrically responsive cell | 6.98e-07 | 39 |
electrically active cell | 6.98e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.60e-24 | 75 |
ectoderm-derived structure | 1.70e-22 | 95 |
ectoderm | 1.70e-22 | 95 |
presumptive ectoderm | 1.70e-22 | 95 |
central nervous system | 3.48e-22 | 73 |
ecto-epithelium | 9.80e-14 | 73 |
regional part of nervous system | 1.78e-13 | 54 |
neurectoderm | 2.35e-12 | 64 |
neural plate | 2.35e-12 | 64 |
presumptive neural plate | 2.35e-12 | 64 |
neural tube | 4.66e-12 | 52 |
neural rod | 4.66e-12 | 52 |
future spinal cord | 4.66e-12 | 52 |
neural keel | 4.66e-12 | 52 |
peripheral nervous system | 4.29e-11 | 11 |
structure with developmental contribution from neural crest | 3.17e-10 | 92 |
occipital lobe | 5.75e-10 | 10 |
visual cortex | 5.75e-10 | 10 |
neocortex | 5.75e-10 | 10 |
brain | 1.70e-09 | 47 |
future brain | 1.70e-09 | 47 |
autonomic nervous system | 2.50e-09 | 9 |
regional part of brain | 7.64e-09 | 46 |
gray matter | 8.34e-09 | 34 |
posterior neural tube | 2.12e-07 | 12 |
chordal neural plate | 2.12e-07 | 12 |
anterior neural tube | 9.82e-07 | 40 |