FFCP PHASE1:Mm9::chr8:13890233..13890300,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr8:13890233..13890300,- to FFCP PHASE1:Mm9::chr8:13890233..13890300,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=66423 | |EntrezGene=66423 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CQ13 | |UniProt=Q9CQ13 | ||
|association_with_transcript=0bp_to_ENSMUST00000033839,NM_025556,uc009kyr.2_5end | |||
|cluster_id=chr8:13890233..13890300,- | |||
|description=CAGE_peak_1_at_2410022L05Rik_5end | |||
|id=chr8:13890233..13890300,- | |||
|ontology_enrichment_celltype=CL:0000221!1.73e-19!44;CL:0000133!1.73e-19!44;CL:0000055!3.31e-19!50;CL:0002319!3.63e-19!43;CL:0002321!4.83e-18!70;CL:0000220!4.83e-18!70;CL:0000393!2.03e-16!39;CL:0000211!2.03e-16!39;CL:0000540!6.80e-16!33;CL:0000047!6.80e-16!33;CL:0000031!6.80e-16!33;CL:0000404!6.80e-16!33;CL:0000117!6.08e-14!23;CL:0000337!6.08e-14!23;CL:0000548!2.98e-07!115;CL:0000004!2.98e-07!115;CL:0000255!2.98e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.72e-19,44;CL:0000133,1.72e-19,44;CL:0002319,3.60e-19,43;CL:0002321,4.80e-18,70;CL:0000393,2.02e-16,39;CL:0000211,2.02e-16,39;CL:0000540,6.76e-16,33;CL:0000047,6.76e-16,33;CL:0000031,6.76e-16,33;CL:0000404,6.76e-16,33;CL:0000117,6.05e-14,23;CL:0000337,6.05e-14,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.07e-29!73;UBERON:0005743!5.07e-29!73;UBERON:0000073!6.38e-29!75;UBERON:0001016!6.38e-29!75;UBERON:0001049!1.38e-19!52;UBERON:0005068!1.38e-19!52;UBERON:0006241!1.38e-19!52;UBERON:0007135!1.38e-19!52;UBERON:0004121!3.28e-19!102;UBERON:0000924!3.28e-19!102;UBERON:0006601!3.28e-19!102;UBERON:0000955!5.07e-18!50;UBERON:0006238!5.07e-18!50;UBERON:0002616!7.42e-18!49;UBERON:0002346!3.73e-16!71;UBERON:0003075!3.73e-16!71;UBERON:0007284!3.73e-16!71;UBERON:0000033!6.44e-16!63;UBERON:0002020!9.78e-16!34;UBERON:0003080!1.95e-13!40;UBERON:0002780!6.91e-13!39;UBERON:0001890!6.91e-13!39;UBERON:0006240!6.91e-13!39;UBERON:0002791!1.13e-12!29;UBERON:0003528!1.13e-12!29;UBERON:0001893!1.13e-12!29;UBERON:0003056!4.42e-12!49;UBERON:0000956!5.93e-09!21;UBERON:0001869!5.93e-09!21;UBERON:0000203!5.93e-09!21;UBERON:0002619!1.20e-07!17;UBERON:0003076!4.39e-07!12;UBERON:0003057!4.39e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.01e-29,73;UBERON:0001016,6.32e-29,75;UBERON:0004121,1.71e-21,95;UBERON:0000924,1.71e-21,95;UBERON:0006601,1.71e-21,95;UBERON:0000073,4.67e-21,54;UBERON:0001049,1.37e-19,52;UBERON:0005068,1.37e-19,52;UBERON:0006241,1.37e-19,52;UBERON:0007135,1.37e-19,52;UBERON:0002346,6.15e-19,64;UBERON:0003075,6.15e-19,64;UBERON:0007284,6.15e-19,64;UBERON:0000955,4.65e-16,47;UBERON:0006238,4.65e-16,47;UBERON:0010314,6.10e-16,92;UBERON:0002616,6.79e-16,46;UBERON:0002020,9.73e-16,34;UBERON:0010371,2.92e-15,73;UBERON:0003080,1.94e-13,40;UBERON:0002780,6.88e-13,39;UBERON:0001890,6.88e-13,39;UBERON:0006240,6.88e-13,39;UBERON:0003528,1.13e-12,29;UBERON:0002791,1.13e-12,29;UBERON:0001893,1.13e-12,29;UBERON:0003056,4.40e-12,49;UBERON:0000956,5.91e-09,21;UBERON:0001869,5.91e-09,21;UBERON:0000203,5.91e-09,21;UBERON:0002619,1.20e-07,17;UBERON:0003076,4.38e-07,12;UBERON:0003057,4.38e-07,12 | |||
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| ||
|short_description=p1@2410022L05Rik | |||
}} | }} |
Latest revision as of 19:09, 1 October 2015
Short description: | p1@2410022L05Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2410022L05Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 0bp_to_ENSMUST00000033839, NM_025556, uc009kyr.2_5end |
EntrezGene: | 2410022L05Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.72e-19 | 44 |
neurectodermal cell | 1.72e-19 | 44 |
neural cell | 3.60e-19 | 43 |
embryonic cell | 4.80e-18 | 70 |
electrically responsive cell | 2.02e-16 | 39 |
electrically active cell | 2.02e-16 | 39 |
neuron | 6.76e-16 | 33 |
neuronal stem cell | 6.76e-16 | 33 |
neuroblast | 6.76e-16 | 33 |
electrically signaling cell | 6.76e-16 | 33 |
CNS neuron (sensu Vertebrata) | 6.05e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.05e-14 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.01e-29 | 73 |
nervous system | 6.32e-29 | 75 |
ectoderm-derived structure | 1.71e-21 | 95 |
ectoderm | 1.71e-21 | 95 |
presumptive ectoderm | 1.71e-21 | 95 |
regional part of nervous system | 4.67e-21 | 54 |
neural tube | 1.37e-19 | 52 |
neural rod | 1.37e-19 | 52 |
future spinal cord | 1.37e-19 | 52 |
neural keel | 1.37e-19 | 52 |
neurectoderm | 6.15e-19 | 64 |
neural plate | 6.15e-19 | 64 |
presumptive neural plate | 6.15e-19 | 64 |
brain | 4.65e-16 | 47 |
future brain | 4.65e-16 | 47 |
structure with developmental contribution from neural crest | 6.10e-16 | 92 |
regional part of brain | 6.79e-16 | 46 |
gray matter | 9.73e-16 | 34 |
ecto-epithelium | 2.92e-15 | 73 |
anterior neural tube | 1.94e-13 | 40 |
regional part of forebrain | 6.88e-13 | 39 |
forebrain | 6.88e-13 | 39 |
future forebrain | 6.88e-13 | 39 |
brain grey matter | 1.13e-12 | 29 |
regional part of telencephalon | 1.13e-12 | 29 |
telencephalon | 1.13e-12 | 29 |
pre-chordal neural plate | 4.40e-12 | 49 |
cerebral cortex | 5.91e-09 | 21 |
cerebral hemisphere | 5.91e-09 | 21 |
pallium | 5.91e-09 | 21 |
regional part of cerebral cortex | 1.20e-07 | 17 |
posterior neural tube | 4.38e-07 | 12 |
chordal neural plate | 4.38e-07 | 12 |