FFCP PHASE1:Mm9::chr8:108089857..108089882,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr8:108089857..108089882,- to FFCP PHASE1:Mm9::chr8:108089857..108089882,-: NSchange) |
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(6 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=11972 | |EntrezGene=11972 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=P51863 | |UniProt=P51863 | ||
|association_with_transcript=57bp_to_NM_013477,uc009ndg.1_5end | |||
|cluster_id=chr8:108089857..108089882,- | |||
|description=CAGE_peak_3_at_Atp6v0d1_5end | |||
|id=chr8:108089857..108089882,- | |||
|ontology_enrichment_celltype=CL:0000055!3.11e-13!50;CL:0000221!5.36e-13!44;CL:0000133!5.36e-13!44;CL:0002319!5.42e-13!43;CL:0000117!4.24e-11!23;CL:0000337!4.24e-11!23;CL:0000393!2.04e-10!39;CL:0000211!2.04e-10!39;CL:0000540!2.06e-10!33;CL:0000047!2.06e-10!33;CL:0000031!2.06e-10!33;CL:0000404!2.06e-10!33;CL:0000723!4.59e-07!91;CL:0000048!4.59e-07!91;CL:0000034!4.67e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.75e-13,44;CL:0000133,3.75e-13,44;CL:0002319,3.79e-13,43;CL:0000117,3.15e-11,23;CL:0000337,3.15e-11,23;CL:0000393,1.55e-10,39;CL:0000211,1.55e-10,39;CL:0000540,1.56e-10,33;CL:0000047,1.56e-10,33;CL:0000031,1.56e-10,33;CL:0000404,1.56e-10,33;CL:0000723,2.51e-07,91;CL:0000048,2.51e-07,91;CL:0000034,2.79e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.17e-26!75;UBERON:0001016!2.17e-26!75;UBERON:0001017!6.52e-26!73;UBERON:0005743!6.52e-26!73;UBERON:0004121!1.27e-23!102;UBERON:0000924!1.27e-23!102;UBERON:0006601!1.27e-23!102;UBERON:0001049!2.47e-21!52;UBERON:0005068!2.47e-21!52;UBERON:0006241!2.47e-21!52;UBERON:0007135!2.47e-21!52;UBERON:0002346!2.76e-20!71;UBERON:0003075!2.76e-20!71;UBERON:0007284!2.76e-20!71;UBERON:0000033!1.30e-19!63;UBERON:0000955!5.23e-19!50;UBERON:0006238!5.23e-19!50;UBERON:0002616!1.34e-18!49;UBERON:0003056!1.56e-16!49;UBERON:0003080!2.48e-15!40;UBERON:0002780!7.47e-15!39;UBERON:0001890!7.47e-15!39;UBERON:0006240!7.47e-15!39;UBERON:0002020!2.43e-14!34;UBERON:0007811!1.12e-11!86;UBERON:0002791!2.59e-11!29;UBERON:0003528!2.59e-11!29;UBERON:0001893!2.59e-11!29;UBERON:0000153!5.39e-09!94;UBERON:0000956!9.29e-08!21;UBERON:0001869!9.29e-08!21;UBERON:0000203!9.29e-08!21;UBERON:0000025!2.93e-07!114;UBERON:0004111!3.22e-07!122;UBERON:0003076!9.27e-07!12;UBERON:0003057!9.27e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.97e-27,75;UBERON:0001017,3.05e-26,73;UBERON:0004121,1.34e-24,95;UBERON:0000924,1.34e-24,95;UBERON:0006601,1.34e-24,95;UBERON:0000073,3.80e-22,54;UBERON:0002346,4.92e-22,64;UBERON:0003075,4.92e-22,64;UBERON:0007284,4.92e-22,64;UBERON:0001049,1.33e-21,52;UBERON:0005068,1.33e-21,52;UBERON:0006241,1.33e-21,52;UBERON:0007135,1.33e-21,52;UBERON:0010371,6.76e-19,73;UBERON:0000955,3.74e-18,47;UBERON:0006238,3.74e-18,47;UBERON:0002616,9.54e-18,46;UBERON:0003056,9.79e-17,49;UBERON:0003080,1.61e-15,40;UBERON:0002780,4.94e-15,39;UBERON:0001890,4.94e-15,39;UBERON:0006240,4.94e-15,39;UBERON:0002020,1.63e-14,34;UBERON:0010314,2.36e-12,92;UBERON:0003528,1.91e-11,29;UBERON:0002791,1.91e-11,29;UBERON:0001893,1.91e-11,29;UBERON:0000956,7.65e-08,21;UBERON:0001869,7.65e-08,21;UBERON:0000203,7.65e-08,21;UBERON:0004111,3.12e-07,122;UBERON:0000025,3.47e-07,114;UBERON:0003076,7.87e-07,12;UBERON:0003057,7.87e-07,12 | |||
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| ||
|short_description=p3@Atp6v0d1 | |||
}} | }} |
Latest revision as of 07:26, 27 September 2015
Short description: | p3@Atp6v0d1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Atp6v0d1_5end |
Coexpression cluster: | NA |
Association with transcript: | 57bp_to_NM_013477, uc009ndg.1_5end |
EntrezGene: | Atp6v0d1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.75e-13 | 44 |
neurectodermal cell | 3.75e-13 | 44 |
neural cell | 3.79e-13 | 43 |
CNS neuron (sensu Vertebrata) | 3.15e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.15e-11 | 23 |
electrically responsive cell | 1.55e-10 | 39 |
electrically active cell | 1.55e-10 | 39 |
neuron | 1.56e-10 | 33 |
neuronal stem cell | 1.56e-10 | 33 |
neuroblast | 1.56e-10 | 33 |
electrically signaling cell | 1.56e-10 | 33 |
somatic stem cell | 2.51e-07 | 91 |
multi fate stem cell | 2.51e-07 | 91 |
stem cell | 2.79e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.97e-27 | 75 |
central nervous system | 3.05e-26 | 73 |
ectoderm-derived structure | 1.34e-24 | 95 |
ectoderm | 1.34e-24 | 95 |
presumptive ectoderm | 1.34e-24 | 95 |
regional part of nervous system | 3.80e-22 | 54 |
neurectoderm | 4.92e-22 | 64 |
neural plate | 4.92e-22 | 64 |
presumptive neural plate | 4.92e-22 | 64 |
neural tube | 1.33e-21 | 52 |
neural rod | 1.33e-21 | 52 |
future spinal cord | 1.33e-21 | 52 |
neural keel | 1.33e-21 | 52 |
ecto-epithelium | 6.76e-19 | 73 |
brain | 3.74e-18 | 47 |
future brain | 3.74e-18 | 47 |
regional part of brain | 9.54e-18 | 46 |
pre-chordal neural plate | 9.79e-17 | 49 |
anterior neural tube | 1.61e-15 | 40 |
regional part of forebrain | 4.94e-15 | 39 |
forebrain | 4.94e-15 | 39 |
future forebrain | 4.94e-15 | 39 |
gray matter | 1.63e-14 | 34 |
structure with developmental contribution from neural crest | 2.36e-12 | 92 |
brain grey matter | 1.91e-11 | 29 |
regional part of telencephalon | 1.91e-11 | 29 |
telencephalon | 1.91e-11 | 29 |
cerebral cortex | 7.65e-08 | 21 |
cerebral hemisphere | 7.65e-08 | 21 |
pallium | 7.65e-08 | 21 |
anatomical conduit | 3.12e-07 | 122 |
tube | 3.47e-07 | 114 |
posterior neural tube | 7.87e-07 | 12 |
chordal neural plate | 7.87e-07 | 12 |