FFCP PHASE1:Mm9::chr7:13619953..13620022,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr7:13619953..13620022,- to FFCP PHASE1:Mm9::chr7:13619953..13620022,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=68953 | |EntrezGene=68953 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1875 | |||
|TSSclassifier=NA | |||
|UniProt=Q9DB34 | |UniProt=Q9DB34 | ||
|association_with_transcript=103bp_to_ENSMUST00000005711,NM_026885,uc009ffc.2_5end | |||
|cluster_id=chr7:13619953..13620022,- | |||
|description=CAGE_peak_2_at_Chmp2a_5end | |||
|id=chr7:13619953..13620022,- | |||
|ontology_enrichment_celltype=CL:0000055!5.74e-21!50;CL:0002319!9.98e-18!43;CL:0000221!1.27e-17!44;CL:0000133!1.27e-17!44;CL:0000393!6.93e-17!39;CL:0000211!6.93e-17!39;CL:0002321!2.45e-14!70;CL:0000220!2.45e-14!70;CL:0000540!8.90e-14!33;CL:0000047!8.90e-14!33;CL:0000031!8.90e-14!33;CL:0000404!8.90e-14!33;CL:0000117!1.55e-12!23;CL:0000337!1.55e-12!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.98e-18,43;CL:0000221,1.27e-17,44;CL:0000133,1.27e-17,44;CL:0000393,6.93e-17,39;CL:0000211,6.93e-17,39;CL:0002321,2.45e-14,70;CL:0000540,8.90e-14,33;CL:0000047,8.90e-14,33;CL:0000031,8.90e-14,33;CL:0000404,8.90e-14,33;CL:0000117,1.55e-12,23;CL:0000337,1.55e-12,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.19e-25,75;UBERON:0001017,1.08e-24,73;UBERON:0000073,6.25e-20,54;UBERON:0001049,5.61e-18,52;UBERON:0005068,5.61e-18,52;UBERON:0006241,5.61e-18,52;UBERON:0007135,5.61e-18,52;UBERON:0004121,3.97e-16,95;UBERON:0000924,3.97e-16,95;UBERON:0006601,3.97e-16,95;UBERON:0002616,4.75e-16,46;UBERON:0003080,5.13e-16,40;UBERON:0010314,5.67e-16,92;UBERON:0002346,5.75e-16,64;UBERON:0003075,5.75e-16,64;UBERON:0007284,5.75e-16,64;UBERON:0002780,6.37e-16,39;UBERON:0001890,6.37e-16,39;UBERON:0006240,6.37e-16,39;UBERON:0000955,8.30e-16,47;UBERON:0006238,8.30e-16,47;UBERON:0002020,2.10e-14,34;UBERON:0003056,1.05e-12,49;UBERON:0003528,3.81e-12,29;UBERON:0002791,3.81e-12,29;UBERON:0001893,3.81e-12,29;UBERON:0010371,1.98e-11,73;UBERON:0000025,2.41e-10,114;UBERON:0004111,1.11e-08,122;UBERON:0000956,5.58e-08,21;UBERON:0001869,5.58e-08,21;UBERON:0000203,5.58e-08,21;UBERON:0002619,3.87e-07,17 | |||
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| ||
|short_description=p2@Chmp2a | |||
}} | }} |
Latest revision as of 00:04, 26 September 2015
Short description: | p2@Chmp2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Chmp2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1875 |
Association with transcript: | 103bp_to_ENSMUST00000005711, NM_026885, uc009ffc.2_5end |
EntrezGene: | Chmp2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.98e-18 | 43 |
ectodermal cell | 1.27e-17 | 44 |
neurectodermal cell | 1.27e-17 | 44 |
electrically responsive cell | 6.93e-17 | 39 |
electrically active cell | 6.93e-17 | 39 |
embryonic cell | 2.45e-14 | 70 |
neuron | 8.90e-14 | 33 |
neuronal stem cell | 8.90e-14 | 33 |
neuroblast | 8.90e-14 | 33 |
electrically signaling cell | 8.90e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.55e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.55e-12 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.19e-25 | 75 |
central nervous system | 1.08e-24 | 73 |
regional part of nervous system | 6.25e-20 | 54 |
neural tube | 5.61e-18 | 52 |
neural rod | 5.61e-18 | 52 |
future spinal cord | 5.61e-18 | 52 |
neural keel | 5.61e-18 | 52 |
ectoderm-derived structure | 3.97e-16 | 95 |
ectoderm | 3.97e-16 | 95 |
presumptive ectoderm | 3.97e-16 | 95 |
regional part of brain | 4.75e-16 | 46 |
anterior neural tube | 5.13e-16 | 40 |
structure with developmental contribution from neural crest | 5.67e-16 | 92 |
neurectoderm | 5.75e-16 | 64 |
neural plate | 5.75e-16 | 64 |
presumptive neural plate | 5.75e-16 | 64 |
regional part of forebrain | 6.37e-16 | 39 |
forebrain | 6.37e-16 | 39 |
future forebrain | 6.37e-16 | 39 |
brain | 8.30e-16 | 47 |
future brain | 8.30e-16 | 47 |
gray matter | 2.10e-14 | 34 |
pre-chordal neural plate | 1.05e-12 | 49 |
brain grey matter | 3.81e-12 | 29 |
regional part of telencephalon | 3.81e-12 | 29 |
telencephalon | 3.81e-12 | 29 |
ecto-epithelium | 1.98e-11 | 73 |
tube | 2.41e-10 | 114 |
anatomical conduit | 1.11e-08 | 122 |
cerebral cortex | 5.58e-08 | 21 |
cerebral hemisphere | 5.58e-08 | 21 |
pallium | 5.58e-08 | 21 |
regional part of cerebral cortex | 3.87e-07 | 17 |