FFCP PHASE1:Mm9::chr6:115084917..115085000,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr6:115084917..115085000,+ to FFCP PHASE1:Mm9::chr6:115084917..115085000,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20965 | |EntrezGene=20965 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q64332,Q8CE19 | |UniProt=Q64332,Q8CE19 | ||
|association_with_transcript=0bp_to_ENSMUST00000009538,ENSMUST00000169345,NM_001111015,NM_013681,uc009dim.2,uc009din.2_5end | |||
|cluster_id=chr6:115084917..115085000,+ | |||
|description=CAGE_peak_1_at_Syn2_5end | |||
|id=chr6:115084917..115085000,+ | |||
|ontology_enrichment_celltype=CL:0002319!8.14e-15!43;CL:0000221!1.02e-14!44;CL:0000133!1.02e-14!44;CL:0000540!1.43e-14!33;CL:0000047!1.43e-14!33;CL:0000031!1.43e-14!33;CL:0000404!1.43e-14!33;CL:0000117!1.24e-12!23;CL:0000337!1.24e-12!23;CL:0000055!5.55e-10!50;CL:0000393!6.85e-10!39;CL:0000211!6.85e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.10e-15,43;CL:0000221,1.40e-15,44;CL:0000133,1.40e-15,44;CL:0000540,1.67e-15,33;CL:0000047,1.67e-15,33;CL:0000031,1.67e-15,33;CL:0000404,1.67e-15,33;CL:0000117,2.00e-13,23;CL:0000337,2.00e-13,23;CL:0000393,6.38e-11,39;CL:0000211,6.38e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.41e-32!73;UBERON:0005743!7.41e-32!73;UBERON:0000073!5.31e-31!75;UBERON:0001016!5.31e-31!75;UBERON:0004121!5.62e-28!102;UBERON:0000924!5.62e-28!102;UBERON:0006601!5.62e-28!102;UBERON:0002346!1.59e-24!71;UBERON:0003075!1.59e-24!71;UBERON:0007284!1.59e-24!71;UBERON:0001049!7.89e-23!52;UBERON:0005068!7.89e-23!52;UBERON:0006241!7.89e-23!52;UBERON:0007135!7.89e-23!52;UBERON:0000955!6.12e-22!50;UBERON:0006238!6.12e-22!50;UBERON:0002616!2.73e-21!49;UBERON:0000033!2.49e-19!63;UBERON:0002020!2.66e-19!34;UBERON:0003080!9.97e-18!40;UBERON:0002780!4.35e-17!39;UBERON:0001890!4.35e-17!39;UBERON:0006240!4.35e-17!39;UBERON:0002791!1.67e-16!29;UBERON:0003528!1.67e-16!29;UBERON:0001893!1.67e-16!29;UBERON:0003056!1.03e-15!49;UBERON:0000956!3.32e-12!21;UBERON:0001869!3.32e-12!21;UBERON:0000203!3.32e-12!21;UBERON:0002619!1.86e-10!17;UBERON:0000468!1.68e-08!333;UBERON:0007811!3.58e-08!86;UBERON:0002021!4.49e-08!10;UBERON:0000411!4.49e-08!10;UBERON:0001950!4.49e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.42e-33,73;UBERON:0001016,2.50e-32,75;UBERON:0000073,1.91e-25,54;UBERON:0001049,6.50e-24,52;UBERON:0005068,6.50e-24,52;UBERON:0006241,6.50e-24,52;UBERON:0007135,6.50e-24,52;UBERON:0004121,7.95e-24,95;UBERON:0000924,7.95e-24,95;UBERON:0006601,7.95e-24,95;UBERON:0002346,1.48e-22,64;UBERON:0003075,1.48e-22,64;UBERON:0007284,1.48e-22,64;UBERON:0000955,8.19e-21,47;UBERON:0006238,8.19e-21,47;UBERON:0002020,1.42e-20,34;UBERON:0002616,3.90e-20,46;UBERON:0003080,3.24e-18,40;UBERON:0003528,1.42e-17,29;UBERON:0002791,1.42e-17,29;UBERON:0001893,1.42e-17,29;UBERON:0002780,1.55e-17,39;UBERON:0001890,1.55e-17,39;UBERON:0006240,1.55e-17,39;UBERON:0010371,3.95e-17,73;UBERON:0010314,5.20e-16,92;UBERON:0003056,5.31e-16,49;UBERON:0000956,5.76e-13,21;UBERON:0001869,5.76e-13,21;UBERON:0000203,5.76e-13,21;UBERON:0002619,4.30e-11,17;UBERON:0002021,1.53e-08,10;UBERON:0000411,1.53e-08,10;UBERON:0001950,1.53e-08,10 | |||
|phase1_expression=2.5623815536767,0,0,0,0,3.3575854382378,2.80335168714631,0,0,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0,0,47.9644156452034,0,0,0.319984845586813,0.45881856213434,0,0,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.866554859253824,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0,0,0,0,15.4797861030117,7.68901639570651,8.1660557611199,5.73944328663986,25.8754615856949,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,36.0123300330084,39.1453324661304,48.8050180699758,1.0165335962074,0.889294796111139,0,0,0.7104801149461,38.9480143673926,50.3325979971236,16.279269132431,18.3608076131099,13.8814474491912,172.818845564301,126.557673965275,20.4559634688973,20.6067762689208,24.8189072384706,249.963049868612,241.20138164292,224.111932020859,29.1468695883728,25.3420772778675,36.4639359389732,231.163523173143,177.270222159979,227.974985683001,137.886178001676,105.639787152934,59.6478226640962,0.605809546665472,2.41828992341714,0.579728977403356,0,0,0,0,0,11.9377757111989,0,0,0,3.23939865486365,0,0,0,0,0,0,7.65031994117702,0.258937883647172,18.4068252440383,15.9606500624845,11.8741536541735,12.9144678463393,18.38816214742,15.4041206347773,8.16832843642891,0.494389935468748,1.15679485535929,0,1.45590164952668,1.32504911076236,0,3.72783522436244,156.930507198189,161.902304366801,2.55457055208591,0,0,0,228.730306371164,161.497712794975,49.3821603803557,291.851033602832,282.821295807346,187.217028148164,203.450543886968,0.81471491080253,2.98576729464223,17.1851475734899,3.15662783829711,0.390361328888111,1.14951052216736,1.26043490863744,1.65775299619287,2.78949646520444,2.94661556655154,2.71735001223214,12.9351685369508,0.862271971731369,0.567318240503458,0.703804496655795,0.657587197282725,1.11218899690239,0.348252166522167,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0.938104239924385,0.900310307305074,0.710234206755631,0.393528463494808,1.23413690309903,1.62773761325285,0.804820204198858,0.350296027101508,1.15191894939436,0.32833492815819,1.13496333364198,0.584799949701329,1.09775057645525,1.34206418760372,332.047828782757,66.1676657598799,1.65209391491899,1.05780226665418,1.91959425481711,1.16118335930219,2.06187938115349,3.02525286935014,2.2237804384487,2.85338439168839,4.2707615539006,3.62337700392824,9.55073793441024,6.56556357735798,7.40863531052657,1.79763881730844,2.59365659849633,3.78368419183298,0.948339504765408,3.42745537829186,1.1270773567308,1.22190796707189,2.32742984601151,2.31448205638051,3.92066530170395,5.16635517928608,5.49495547444812,5.67626954040282,0,0.333690211432188,0,0,0,0,0.25462585178142,0.287696137450811,0,0,1.43768206527355,0.372140947668503,0.312037673114561,0,0,0,4.98833613449833,0.189491411770485,0.814824882210129,0.339490171550376,1.87752198630802,1.17254380209271,0.714130922658041,1.17080188714679,3.15270288212382,2.6575762757853,7.33491935824441,6.06294264448231,10.3610989119537,9.83613598354279,0,0,0.983528546038072,0.275936746304732,168.096467717218,161.048857377687,0,2.27223834483936,7.2566890465739,11.3227235846025,10.5557464889071,4.54040716109849,10.2487390077901,12.7384438854975,12.5491317519217,20.7501659117031,15.8115111178609,209.82281962344,7.52282451603824,0.534196811001766,0.651547837414304,3.79431282836832,21.2392221343941,1.69946445308487,1.51161778482376,1.13163047853539,3.54362271456927,3.68922177532713,4.39328098385976,5.08947221268508,6.06045543254026,9.7971394960103,7.37930260024991,6.18813259489121,14.9793426531667,0.720244376125241,0.517434735131018,3.42939256050548,5.32020700926821,6.59964625127661,10.6956863391379,14.6143175575008,0,0,6.83638033970382,0.8244312647074,0.322928853391811,0.422190474497091,0.477489376012546,0.984845398470368,2.62332752966866,169.664151339616,0,0,0,0,0,0,0,0.419854356970974,0,0.954670618015114,1.10717597753397,2.23651413839534,3.88819226958485,4.18176592028937,3.05707589244649,4.98998081623837,7.93473174963225,3.92633912976044,3.88844919875379,3.72803587852155,2.25477175473676,0.598066184175915,0.496375471371293,1.94451188344048,0.387479470433193,0.675824501963113,0.469428954583016,2.0832701575032,4.92838918800841,2.65742532908607,2.88030006257865,0.316011120628178,0.608175645870493,0.513554785824136,0.25984164595559,0.537080087002444,0.39736270956253,0.360586348559907,0.590758108698309,0.302899349844443,0.609654453239999,0.705783295957884,0.877120926657772,0.481059208201647,0.350630706544707,1.13365191807606,0,0,0,21.0576657495088,0.750729901804728,8.05867146775966,1.2862102744744,0.501572104035363,262.609606816936,237.527822037703,277.281428504668,305.554958207077,276.088255467569,276.47416644463,277.434247595272,301.264884957003,254.212891440139,273.377444604961,1.86817225651518,3.99024873401031,4.43907374960749,5.34834777550247,6.07878171621149,10.2952364732008,10.2233494788743,9.68364769022803,8.98573786857083,9.6024940470243,7.85785829659743,9.24269072791773,9.45779225445812,8.9635213366817,9.24711050185374,11.4310485907938,12.5155072020444,1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| |phase1_expression=2.5623815536767,0,0,0,0,3.3575854382378,2.80335168714631,0,0,0.234064526321993,0,0,0,0,0.333109761815663,0,0,0,0,0,47.9644156452034,0,0,0.319984845586813,0.45881856213434,0,0,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.866554859253824,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0,0,0,0,15.4797861030117,7.68901639570651,8.1660557611199,5.73944328663986,25.8754615856949,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,36.0123300330084,39.1453324661304,48.8050180699758,1.0165335962074,0.889294796111139,0,0,0.7104801149461,38.9480143673926,50.3325979971236,16.279269132431,18.3608076131099,13.8814474491912,172.818845564301,126.557673965275,20.4559634688973,20.6067762689208,24.8189072384706,249.963049868612,241.20138164292,224.111932020859,29.1468695883728,25.3420772778675,36.4639359389732,231.163523173143,177.270222159979,227.974985683001,137.886178001676,105.639787152934,59.6478226640962,0.605809546665472,2.41828992341714,0.579728977403356,0,0,0,0,0,11.9377757111989,0,0,0,3.23939865486365,0,0,0,0,0,0,7.65031994117702,0.258937883647172,18.4068252440383,15.9606500624845,11.8741536541735,12.9144678463393,18.38816214742,15.4041206347773,8.16832843642891,0.494389935468748,1.15679485535929,0,1.45590164952668,1.32504911076236,0,3.72783522436244,156.930507198189,161.902304366801,2.55457055208591,0,0,0,228.730306371164,161.497712794975,49.3821603803557,291.851033602832,282.821295807346,187.217028148164,203.450543886968,0.81471491080253,2.98576729464223,17.1851475734899,3.15662783829711,0.390361328888111,1.14951052216736,1.26043490863744,1.65775299619287,2.78949646520444,2.94661556655154,2.71735001223214,12.9351685369508,0.862271971731369,0.567318240503458,0.703804496655795,0.657587197282725,1.11218899690239,0.348252166522167,0.205782136407943,0.59710280045548,0,0,0,0.414251545071004,0.938104239924385,0.900310307305074,0.710234206755631,0.393528463494808,1.23413690309903,1.62773761325285,0.804820204198858,0.350296027101508,1.15191894939436,0.32833492815819,1.13496333364198,0.584799949701329,1.09775057645525,1.34206418760372,332.047828782757,66.1676657598799,1.65209391491899,1.05780226665418,1.91959425481711,1.16118335930219,2.06187938115349,3.02525286935014,2.2237804384487,2.85338439168839,4.2707615539006,3.62337700392824,9.55073793441024,6.56556357735798,7.40863531052657,1.79763881730844,2.59365659849633,3.78368419183298,0.948339504765408,3.42745537829186,1.1270773567308,1.22190796707189,2.32742984601151,2.31448205638051,3.92066530170395,5.16635517928608,5.49495547444812,5.67626954040282,0,0.333690211432188,0,0,0,0,0.25462585178142,0.287696137450811,0,0,1.43768206527355,0.372140947668503,0.312037673114561,0,0,0,4.98833613449833,0.189491411770485,0.814824882210129,0.339490171550376,1.87752198630802,1.17254380209271,0.714130922658041,1.17080188714679,3.15270288212382,2.6575762757853,7.33491935824441,6.06294264448231,10.3610989119537,9.83613598354279,0,0,0.983528546038072,0.275936746304732,168.096467717218,161.048857377687,0,2.27223834483936,7.2566890465739,11.3227235846025,10.5557464889071,4.54040716109849,10.2487390077901,12.7384438854975,12.5491317519217,20.7501659117031,15.8115111178609,209.82281962344,7.52282451603824,0.534196811001766,0.651547837414304,3.79431282836832,21.2392221343941,1.69946445308487,1.51161778482376,1.13163047853539,3.54362271456927,3.68922177532713,4.39328098385976,5.08947221268508,6.06045543254026,9.7971394960103,7.37930260024991,6.18813259489121,14.9793426531667,0.720244376125241,0.517434735131018,3.42939256050548,5.32020700926821,6.59964625127661,10.6956863391379,14.6143175575008,0,0,6.83638033970382,0.8244312647074,0.322928853391811,0.422190474497091,0.477489376012546,0.984845398470368,2.62332752966866,169.664151339616,0,0,0,0,0,0,0,0.419854356970974,0,0.954670618015114,1.10717597753397,2.23651413839534,3.88819226958485,4.18176592028937,3.05707589244649,4.98998081623837,7.93473174963225,3.92633912976044,3.88844919875379,3.72803587852155,2.25477175473676,0.598066184175915,0.496375471371293,1.94451188344048,0.387479470433193,0.675824501963113,0.469428954583016,2.0832701575032,4.92838918800841,2.65742532908607,2.88030006257865,0.316011120628178,0.608175645870493,0.513554785824136,0.25984164595559,0.537080087002444,0.39736270956253,0.360586348559907,0.590758108698309,0.302899349844443,0.609654453239999,0.705783295957884,0.877120926657772,0.481059208201647,0.350630706544707,1.13365191807606,0,0,0,21.0576657495088,0.750729901804728,8.05867146775966,1.2862102744744,0.501572104035363,262.609606816936,237.527822037703,277.281428504668,305.554958207077,276.088255467569,276.47416644463,277.434247595272,301.264884957003,254.212891440139,273.377444604961,1.86817225651518,3.99024873401031,4.43907374960749,5.34834777550247,6.07878171621149,10.2952364732008,10.2233494788743,9.68364769022803,8.98573786857083,9.6024940470243,7.85785829659743,9.24269072791773,9.45779225445812,8.9635213366817,9.24711050185374,11.4310485907938,12.5155072020444,1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| ||
|short_description=p1@Syn2 | |||
}} | }} |
Latest revision as of 11:52, 26 September 2015
Short description: | p1@Syn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Syn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000009538, ENSMUST00000169345, NM_001111015, NM_013681, uc009dim.2, uc009din.2_5end |
EntrezGene: | Syn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.10e-15 | 43 |
ectodermal cell | 1.40e-15 | 44 |
neurectodermal cell | 1.40e-15 | 44 |
neuron | 1.67e-15 | 33 |
neuronal stem cell | 1.67e-15 | 33 |
neuroblast | 1.67e-15 | 33 |
electrically signaling cell | 1.67e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.00e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.00e-13 | 23 |
electrically responsive cell | 6.38e-11 | 39 |
electrically active cell | 6.38e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.42e-33 | 73 |
nervous system | 2.50e-32 | 75 |
regional part of nervous system | 1.91e-25 | 54 |
neural tube | 6.50e-24 | 52 |
neural rod | 6.50e-24 | 52 |
future spinal cord | 6.50e-24 | 52 |
neural keel | 6.50e-24 | 52 |
ectoderm-derived structure | 7.95e-24 | 95 |
ectoderm | 7.95e-24 | 95 |
presumptive ectoderm | 7.95e-24 | 95 |
neurectoderm | 1.48e-22 | 64 |
neural plate | 1.48e-22 | 64 |
presumptive neural plate | 1.48e-22 | 64 |
brain | 8.19e-21 | 47 |
future brain | 8.19e-21 | 47 |
gray matter | 1.42e-20 | 34 |
regional part of brain | 3.90e-20 | 46 |
anterior neural tube | 3.24e-18 | 40 |
brain grey matter | 1.42e-17 | 29 |
regional part of telencephalon | 1.42e-17 | 29 |
telencephalon | 1.42e-17 | 29 |
regional part of forebrain | 1.55e-17 | 39 |
forebrain | 1.55e-17 | 39 |
future forebrain | 1.55e-17 | 39 |
ecto-epithelium | 3.95e-17 | 73 |
structure with developmental contribution from neural crest | 5.20e-16 | 92 |
pre-chordal neural plate | 5.31e-16 | 49 |
cerebral cortex | 5.76e-13 | 21 |
cerebral hemisphere | 5.76e-13 | 21 |
pallium | 5.76e-13 | 21 |
regional part of cerebral cortex | 4.30e-11 | 17 |
occipital lobe | 1.53e-08 | 10 |
visual cortex | 1.53e-08 | 10 |
neocortex | 1.53e-08 | 10 |