FFCP PHASE1:Mm9::chr2:80421429..80421450,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr2:80421429..80421450,- to FFCP PHASE1:Mm9::chr2:80421429..80421450,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=50884 | |EntrezGene=50884 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=361 | |||
|TSSclassifier=NA | |||
|UniProt=P28660 | |UniProt=P28660 | ||
|association_with_transcript=-8bp_to_ENSMUST00000028386_5end | |||
|cluster_id=chr2:80421429..80421450,- | |||
|description=CAGE_peak_3_at_Nckap1_5end | |||
|id=chr2:80421429..80421450,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.44e-14!102;UBERON:0000924!8.44e-14!102;UBERON:0006601!8.44e-14!102;UBERON:0002346!3.13e-12!71;UBERON:0003075!3.13e-12!71;UBERON:0007284!3.13e-12!71;UBERON:0000033!9.50e-12!63;UBERON:0000073!3.91e-11!75;UBERON:0001016!3.91e-11!75;UBERON:0001017!1.32e-10!73;UBERON:0005743!1.32e-10!73;UBERON:0000468!2.55e-10!333;UBERON:0001049!2.97e-10!52;UBERON:0005068!2.97e-10!52;UBERON:0006241!2.97e-10!52;UBERON:0007135!2.97e-10!52;UBERON:0000955!3.58e-10!50;UBERON:0006238!3.58e-10!50;UBERON:0002616!1.25e-09!49;UBERON:0003056!1.97e-09!49;UBERON:0000922!1.42e-08!328;UBERON:0003080!1.19e-07!40;UBERON:0000025!2.23e-07!114;UBERON:0002021!2.79e-07!10;UBERON:0000411!2.79e-07!10;UBERON:0001950!2.79e-07!10;UBERON:0002020!3.61e-07!34;UBERON:0002780!3.86e-07!39;UBERON:0001890!3.86e-07!39;UBERON:0006240!3.86e-07!39;UBERON:0004111!5.10e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,9.60e-14,92;UBERON:0004121,1.43e-13,95;UBERON:0000924,1.43e-13,95;UBERON:0006601,1.43e-13,95;UBERON:0010371,2.92e-13,73;UBERON:0002346,3.07e-12,64;UBERON:0003075,3.07e-12,64;UBERON:0007284,3.07e-12,64;UBERON:0001016,3.84e-11,75;UBERON:0000073,1.23e-10,54;UBERON:0001017,1.30e-10,73;UBERON:0001049,2.92e-10,52;UBERON:0005068,2.92e-10,52;UBERON:0006241,2.92e-10,52;UBERON:0007135,2.92e-10,52;UBERON:0000922,9.57e-10,320;UBERON:0003056,1.93e-09,49;UBERON:0000955,2.86e-09,47;UBERON:0006238,2.86e-09,47;UBERON:0002616,9.68e-09,46;UBERON:0003080,1.17e-07,40;UBERON:0000025,2.20e-07,114;UBERON:0002021,2.76e-07,10;UBERON:0000411,2.76e-07,10;UBERON:0001950,2.76e-07,10;UBERON:0002020,3.56e-07,34;UBERON:0002780,3.82e-07,39;UBERON:0001890,3.82e-07,39;UBERON:0006240,3.82e-07,39;UBERON:0004111,5.05e-07,122 | |||
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| |phase1_expression=11.0502704502308,2.79180326111489,5.91499011206397,2.11724947914781,4.00716583957078,2.85394762250213,2.33612640595526,0.516493293766305,0.281577444303333,0.234064526321993,0.171217968225505,0.239316476986009,0.171200729931206,0.0874204024189974,1.66554880907831,1.61980213911861,0,0,0.137114433605739,0,10.8004978491859,0.198581902401771,0.261199789138935,2.55987876469451,1.60586496747019,3.44539178469012,1.29228598847722,2.37018355954478,2.28028103347649,2.77233142735924,1.55211357458713,1.27006134691926,5.53558308826113,0,2.02196133825892,2.1610503896604,2.04169356262369,0.418531630736908,0,0,0,0,0,7.42791226055906,7.40051597902456,12.664725899156,5.47673941043627,3.92445281484804,2.63623419281366,3.4997381833371,3.3596741190087,2.87505128729943,0,0,1.00828139742739,9.00408026125814,15.7593391966316,8.76642556871652,7.28339259094552,4.7609188134483,8.23980824558033,2.71075625655306,2.66788438833342,0.899899717281399,0,0,1.49800055259202,2.30530983192933,8.8136170462206,5.53524347159932,6.94072372459561,9.42648248532552,7.28866185140325,8.57435594504678,5.84657373211242,5.51531271966013,8.8092704799511,20.0469120793745,20.8904885228491,5.40733779693795,6.49562269577109,8.85552729946492,15.355064945076,13.5063026407603,16.8078072554491,17.9723437138937,17.6540884190888,12.3023634244698,10.6016670666458,14.5097395405028,5.79728977403356,6.0229671388697,4.0798280022465,1.61910957491345,1.94932925234301,3.58421509677868,6.17955448579708,10.9075406449957,7.01422212427746,6.36011234118612,12.6759077799012,6.41632387071589,10.1922095882658,7.11066703153331,4.76280290224671,2.78695852022608,2.52762222507392,6.05174562511018,3.10725460376606,9.64873903921361,7.80683970447611,6.69824052286711,7.84092690670599,9.64624899536784,10.4653949350777,15.3313241422204,10.1349936771093,6.65157041831594,3.5384422077995,7.60304194752823,3.5334642953663,4.363877278217,7.45567044872489,15.2246014446005,16.3368431314495,2.81002760729451,0,0,0.254140454146129,28.759802765726,32.0250421973039,15.9581027183338,37.0245802009549,49.8645141794145,27.0124457927428,24.0117069340281,13.5446353920921,7.46441823660558,9.60346482047964,5.89237196482127,13.9228873970093,10.8053989083732,13.3245976055958,14.1662528765572,12.3146063463903,12.1708034270607,14.8985742049969,9.05461797586555,10.1316956678436,11.9136830505726,10.0292140773451,11.3981780862339,11.3999372182495,9.4028084960985,10.906453229621,13.1362616100206,0,0,0,17.1914391204467,11.2572508790926,11.3439098720439,11.1270025725049,10.0349758191176,8.79322543458056,9.99895962426754,11.8040296615832,10.1585847859437,11.8483091937706,10.0142153088248,7.94474333549386,6.14039947186396,5.70830299756732,8.18659154438268,35.5390013073375,21.4041593748912,3.96502539580558,4.7601101999438,10.8777007772969,14.3986736553472,10.5671318284117,11.0925938542838,6.89371935919098,7.41879941838981,6.16887780007865,6.25856027951241,7.28872105520782,3.58121649674071,6.23885078781184,7.19055526923377,3.24207074812041,2.19055400579804,7.01771233526402,10.5108631600951,13.5249282807697,12.0154283428735,13.5766741017338,10.2398297039865,13.7855650930881,11.6612016903886,8.00693511991011,8.63780147452604,1.77871576252289,4.83850806576673,5.11053387294328,3.37293168577281,3.24576194221605,3.61765739628625,3.31013607315846,4.60313819921297,5.35046248357617,4.11842119782122,8.62609239164127,9.30352369171258,6.24075346229121,5.05157755894223,6.63770430031075,4.3419916922703,8.31389355749721,12.127450353311,14.3409179268983,9.33597971763535,12.9079636558676,11.3904255060435,13.5684875305028,9.95181604074774,10.719189799221,15.2810635857655,11.0023790373666,9.01248230936559,8.11619414769709,7.23245292907558,0,0,5.90117127622843,5.51873492609465,31.9495674075706,28.3652281553132,9.50822683184717,3.53459298086122,5.99465616890888,10.5418460960092,12.2791336707695,13.860190281248,11.8083297263669,15.286132662597,10.1202675418724,10.5212108848072,12.6492088942888,28.5975971615408,9.08416545332919,7.83488656135923,15.9629220166505,9.89820737835213,5.30980553359851,6.31229654002952,5.13950046840077,5.84675747243284,3.2483208216885,8.30074899448604,8.78656196771952,7.99774204850512,5.34746067577082,3.47640433729398,0,2.06271086496374,8.85142974959849,14.0447653344422,5.95049945400671,10.9311887866112,10.4630737848941,8.38333442729732,12.176627524557,4.56697423671899,11.9682571112492,18.2175580942885,4.85162475720916,11.2122652000206,8.7190790415789,12.6054013099846,13.6084472163576,13.459553779095,6.99554007911642,28.740921811629,2.39219233116994,10.5257302661243,8.70414278637645,4.89757988212197,1.6403307326523,2.28778173206523,0.679913719975421,0.279902904647316,0.552799895217695,0.954670618015114,12.0207677560831,11.7925290933572,10.0444966964275,11.2907679847813,8.07941485860857,6.60835297285622,5.86839535649885,4.71160695571253,2.85152941241944,4.97071450469541,10.1464728963154,15.1011711504419,11.5820943319968,11.4726201122988,13.3034618182063,13.0096216627899,13.4960824442617,12.4996209450192,20.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| ||
|short_description=p3@Nckap1 | |||
}} | }} |
Latest revision as of 01:17, 27 September 2015
Short description: | p3@Nckap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nckap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | -8bp_to_ENSMUST00000028386_5end |
EntrezGene: | Nckap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 9.60e-14 | 92 |
ectoderm-derived structure | 1.43e-13 | 95 |
ectoderm | 1.43e-13 | 95 |
presumptive ectoderm | 1.43e-13 | 95 |
ecto-epithelium | 2.92e-13 | 73 |
neurectoderm | 3.07e-12 | 64 |
neural plate | 3.07e-12 | 64 |
presumptive neural plate | 3.07e-12 | 64 |
nervous system | 3.84e-11 | 75 |
regional part of nervous system | 1.23e-10 | 54 |
central nervous system | 1.30e-10 | 73 |
neural tube | 2.92e-10 | 52 |
neural rod | 2.92e-10 | 52 |
future spinal cord | 2.92e-10 | 52 |
neural keel | 2.92e-10 | 52 |
embryo | 9.57e-10 | 320 |
pre-chordal neural plate | 1.93e-09 | 49 |
brain | 2.86e-09 | 47 |
future brain | 2.86e-09 | 47 |
regional part of brain | 9.68e-09 | 46 |
anterior neural tube | 1.17e-07 | 40 |
tube | 2.20e-07 | 114 |
occipital lobe | 2.76e-07 | 10 |
visual cortex | 2.76e-07 | 10 |
neocortex | 2.76e-07 | 10 |
gray matter | 3.56e-07 | 34 |
regional part of forebrain | 3.82e-07 | 39 |
forebrain | 3.82e-07 | 39 |
future forebrain | 3.82e-07 | 39 |
anatomical conduit | 5.05e-07 | 122 |