FFCP PHASE1:Mm9::chr2:32143505..32143516,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr2:32143505..32143516,- to FFCP PHASE1:Mm9::chr2:32143505..32143516,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=72931 | |EntrezGene=72931 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3343 | |||
|TSSclassifier=NA | |||
|UniProt=A2AN40 | |UniProt=A2AN40 | ||
|association_with_transcript=8bp_to_ENSMUST00000113397_5end | |||
|cluster_id=chr2:32143505..32143516,- | |||
|description=CAGE_peak_3_at_Swi5_5end | |||
|id=chr2:32143505..32143516,- | |||
|ontology_enrichment_celltype=CL:0000221!1.10e-11!44;CL:0000133!1.10e-11!44;CL:0002319!1.27e-11!43;CL:0000055!2.02e-10!50;CL:0000540!2.46e-07!33;CL:0000047!2.46e-07!33;CL:0000031!2.46e-07!33;CL:0000404!2.46e-07!33;CL:0000393!3.72e-07!39;CL:0000211!3.72e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.10e-11,44;CL:0000133,1.10e-11,44;CL:0002319,1.27e-11,43;CL:0000540,2.46e-07,33;CL:0000047,2.46e-07,33;CL:0000031,2.46e-07,33;CL:0000404,2.46e-07,33;CL:0000393,3.72e-07,39;CL:0000211,3.72e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.69e-12!75;UBERON:0001016!5.69e-12!75;UBERON:0001017!1.26e-11!73;UBERON:0005743!1.26e-11!73;UBERON:0002020!2.20e-08!34;UBERON:0001049!4.46e-08!52;UBERON:0005068!4.46e-08!52;UBERON:0006241!4.46e-08!52;UBERON:0007135!4.46e-08!52;UBERON:0002780!1.10e-07!39;UBERON:0001890!1.10e-07!39;UBERON:0006240!1.10e-07!39;UBERON:0003080!1.54e-07!40;UBERON:0003056!2.08e-07!49;UBERON:0002346!2.84e-07!71;UBERON:0003075!2.84e-07!71;UBERON:0007284!2.84e-07!71;UBERON:0004121!4.25e-07!102;UBERON:0000924!4.25e-07!102;UBERON:0006601!4.25e-07!102;UBERON:0002791!9.69e-07!29;UBERON:0003528!9.69e-07!29;UBERON:0001893!9.69e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.69e-12,75;UBERON:0001017,1.26e-11,73;UBERON:0002346,8.30e-09,64;UBERON:0003075,8.30e-09,64;UBERON:0007284,8.30e-09,64;UBERON:0002020,2.20e-08,34;UBERON:0004121,3.08e-08,95;UBERON:0000924,3.08e-08,95;UBERON:0006601,3.08e-08,95;UBERON:0001049,4.46e-08,52;UBERON:0005068,4.46e-08,52;UBERON:0006241,4.46e-08,52;UBERON:0007135,4.46e-08,52;UBERON:0000073,7.44e-08,54;UBERON:0002780,1.10e-07,39;UBERON:0001890,1.10e-07,39;UBERON:0006240,1.10e-07,39;UBERON:0003080,1.54e-07,40;UBERON:0003056,2.08e-07,49;UBERON:0002616,5.12e-07,46;UBERON:0010371,6.85e-07,73;UBERON:0003528,9.69e-07,29;UBERON:0002791,9.69e-07,29;UBERON:0001893,9.69e-07,29 | |||
|phase1_expression=11.0502704502308,0.697950815278722,2.27499619694768,0,1.50268718983904,4.02910252588535,3.97141489012394,1.03298658753261,1.12630977721333,0.70219357896598,1.02730780935303,1.91453181588807,1.71200729931206,1.13646523144697,6.99530499812892,5.26435695213547,1.39912375625629,2.99689057090326,2.87940310572051,4.2438965179803,11.6509307506966,19.4610264353735,28.7319768052829,5.11975752938901,3.21172993494038,4.01962374880514,4.73838195774982,2.80112602491656,2.28028103347649,2.52030129759931,6.65191531965914,3.81018404075779,4.92051830067656,0,4.04392267651784,3.98963148860382,3.87921776898501,3.76678467663217,6.2506827561904,4.18818995179039,2.94115744015507,3.41522742479223,1.45653105909346,4.15459499319405,5.06884656097573,6.9747765821439,14.0830441982647,17.2239873540553,14.4992880604751,15.5543919259427,15.818465643666,18.6878333674463,3.02008690903925,1.45072428402269,1.68046899571232,14.663787854049,8.5960031981627,7.21940929188419,12.1389876515759,9.52183762689659,12.6766280701236,23.041428180701,21.3430751066673,9.89889689009539,6.92206453796882,7.8152812644071,14.6804054154018,21.9004434033286,7.8804105354443,9.31540974488665,13.4607975264884,14.2825492201902,15.2399293256613,9.55428233876641,11.2139201091337,5.51531271966013,2.20231761998777,6.38436690425939,6.45147439676223,14.3756053625911,19.9443063053253,14.5855743755893,7.53794097303729,9.56696437053856,7.94550888439413,6.77645746589436,11.5321061447273,13.047961207771,8.32988126665025,8.31287161174641,2.31891590961342,0.860423876981386,7.47968467078526,5.39703191637817,3.24888208723835,4.03224198387602,4.21333260395256,11.0779709675738,24.4198844326697,13.7802434059033,7.60554466794075,3.84979432242953,0,0,10.3915699685383,8.36087556067825,9.60496445528088,4.11061966988616,3.88406825470758,2.9688427812965,9.88866362566974,2.13125834818499,5.76538743140146,5.27529241934179,5.64425794251383,4.27266410520897,2.71914464507811,4.19338135067744,4.42305275974937,5.82360659810673,5.96272099843063,7.27312879702833,5.59175283654366,3.51336956413857,2.72280718857492,2.29911349687732,20.967646788536,37.1939693215913,28.3366606372934,5.99162557619291,7.32000964509802,8.92145900001337,6.08385120672968,5.62574006126727,5.40248915854856,9.08551073179443,7.33243419722277,6.71797641294502,9.35074206204597,2.10441855886474,12.1012011955314,13.7941262660084,10.2635413989049,10.7000420663358,7.0757959117381,8.45550553880009,4.8724896771059,2.58703370739016,12.7185115830377,9.45530400839096,9.32540958068929,10.7405908889512,6.11703948296315,5.2237824978325,6.99659263787008,8.16040493955822,32.3018066164088,33.1978800177983,21.0280989552739,7.45652781127807,7.97388603935727,6.66229627405755,6.62885259638589,4.72234156193769,6.17068451549513,5.58081467400979,5.36546802799238,6.18856314545998,6.25327429671226,3.94001913789829,3.08061476274252,2.92399974850665,3.95190207523891,2.81833479396781,9.04246778825747,9.67303356365274,0.660837565967596,1.85115396664481,8.10495352033889,6.96710015581316,5.7990357594942,4.63872106633688,3.11329261382818,3.99473814836374,3.32170343081158,4.28217282282428,5.27803938480566,4.37704238490532,3.11942539390592,3.59527763461689,1.94524244887225,2.38969527905241,17.4494468876835,9.02563249616858,7.88954149711563,6.10953983535943,6.20647958936402,6.17195215034803,5.43834219268613,5.75679577120448,4.55296310739987,5.05928372079382,2.96452627087149,7.00749444007595,9.23827277032054,7.19558759631532,4.66578279193557,5.06472035480075,7.38414970166117,6.04161888646702,5.67473293712624,6.31491250332587,1.43768206527355,4.09355042435354,7.17686648163489,5.05157755894223,5.56131981917928,5.78932225636041,3.32555742299888,11.7484675297701,8.47417877498535,8.14776411720903,5.16318546234705,4.35516269348721,3.80869825417622,4.87834119644497,5.2019597555043,4.20782910332672,3.6674596791222,4.42430949732493,4.31712454664739,4.33947175744535,1.50791283939272,3.80733978673097,1.96705709207614,3.03530420935206,5.45872005958493,6.68106613575558,13.9344703570174,3.02965112645248,11.042787679569,10.9322848403059,7.97066571611356,8.60287672629187,7.12955757063661,7.64306633129848,10.1202675418724,10.5212108848072,6.32460444714438,3.21321316421807,7.52282451603824,10.3278050127008,7.4928001302645,4.94910368917606,2.65490276679926,10.9251286269742,11.4882951646605,8.29862350925952,7.67784921490009,5.22639751504677,4.65170927702798,6.18007340111759,9.26893183800275,4.42451461110142,7.37930260024991,5.15677716240934,6.12791290356818,9.90336017172206,12.6771510107099,10.2881776815164,7.80297028026004,6.0645397984704,7.24015690649332,10.3518082698964,8.91752490642099,8.89694697628045,5.51320995137405,2.80306630000516,4.19807509409354,5.36785031860587,5.96861720015682,4.92422699235184,2.62332752966866,3.70850604021019,3.2465467351592,4.95328483111734,7.03739204004904,9.41842285023455,5.33107488111998,5.0331198105435,11.8984900995699,11.47601909054,12.1615976947893,2.86401185404534,7.43389584915668,5.69294507955176,6.48032044930808,4.39085421630384,5.8957892211468,6.60835297285622,4.05001933054146,3.92633912976044,1.42576470620972,3.10669656543463,44.531742156051,9.8680920389026,9.10021697514037,11.2781689239548,15.1116993468945,10.4752797804282,9.15386461436881,10.2861464026721,16.5677764192623,47.5920718027232,30.8192106695916,6.00421129193539,13.9880398550213,19.001527075493,14.551132173513,11.2786818270513,12.715606706001,12.5003267500768,12.7012993370136,10.3995443446592,11.27860738494,8.4693995514946,7.50425681696094,8.27421838106833,5.14258369598903,1.58711268530648,5.54964883435162,11.2142320761845,7.05115388729129,3.28422309854724,7.88266396894964,4.76194223094889,3.64426244434412,4.51414893631827,11.2950368523413,12.889106622201,6.30185064783336,12.8889886757766,8.22099023724771,8.3093328712867,10.1253375034771,7.20513925158753,9.06284817968409,5.1776031175182,19.408233998241,5.58634822761443,9.73181552798565,7.53630822911712,7.54607385460736,6.80220981265052,6.22290837844523,4.12070114477788,4.81378814387723,7.07552192938633,4.81610669791456,5.84741658296836,4.12022632867483,5.05798703998467,5.39893408182765,3.81034953026459,3.47652977834566,5.20854895252004,6.1812885120496,4.41596760403192,2.74295401908332,3.01708870470874,6.67621331852499,4.36039249896986,5.55245344450451,3.55381353145041,5.85369513192872,6.83981249738391,6.3827933507555,3.92799590160417,5.33857581558784,4.23569274214923,4.09231043169689,5.57772628269478,3.85813221962283,5.9954538705107,3.04111090979031,4.94203424311086,6.12122662620299,5.51478547798789,5.56482805489012 | |phase1_expression=11.0502704502308,0.697950815278722,2.27499619694768,0,1.50268718983904,4.02910252588535,3.97141489012394,1.03298658753261,1.12630977721333,0.70219357896598,1.02730780935303,1.91453181588807,1.71200729931206,1.13646523144697,6.99530499812892,5.26435695213547,1.39912375625629,2.99689057090326,2.87940310572051,4.2438965179803,11.6509307506966,19.4610264353735,28.7319768052829,5.11975752938901,3.21172993494038,4.01962374880514,4.73838195774982,2.80112602491656,2.28028103347649,2.52030129759931,6.65191531965914,3.81018404075779,4.92051830067656,0,4.04392267651784,3.98963148860382,3.87921776898501,3.76678467663217,6.2506827561904,4.18818995179039,2.94115744015507,3.41522742479223,1.45653105909346,4.15459499319405,5.06884656097573,6.9747765821439,14.0830441982647,17.2239873540553,14.4992880604751,15.5543919259427,15.818465643666,18.6878333674463,3.02008690903925,1.45072428402269,1.68046899571232,14.663787854049,8.5960031981627,7.21940929188419,12.1389876515759,9.52183762689659,12.6766280701236,23.041428180701,21.3430751066673,9.89889689009539,6.92206453796882,7.8152812644071,14.6804054154018,21.9004434033286,7.8804105354443,9.31540974488665,13.4607975264884,14.2825492201902,15.2399293256613,9.55428233876641,11.2139201091337,5.51531271966013,2.20231761998777,6.38436690425939,6.45147439676223,14.3756053625911,19.9443063053253,14.5855743755893,7.53794097303729,9.56696437053856,7.94550888439413,6.77645746589436,11.5321061447273,13.047961207771,8.32988126665025,8.31287161174641,2.31891590961342,0.860423876981386,7.47968467078526,5.39703191637817,3.24888208723835,4.03224198387602,4.21333260395256,11.0779709675738,24.4198844326697,13.7802434059033,7.60554466794075,3.84979432242953,0,0,10.3915699685383,8.36087556067825,9.60496445528088,4.11061966988616,3.88406825470758,2.9688427812965,9.88866362566974,2.13125834818499,5.76538743140146,5.27529241934179,5.64425794251383,4.27266410520897,2.71914464507811,4.19338135067744,4.42305275974937,5.82360659810673,5.96272099843063,7.27312879702833,5.59175283654366,3.51336956413857,2.72280718857492,2.29911349687732,20.967646788536,37.1939693215913,28.3366606372934,5.99162557619291,7.32000964509802,8.92145900001337,6.08385120672968,5.62574006126727,5.40248915854856,9.08551073179443,7.33243419722277,6.71797641294502,9.35074206204597,2.10441855886474,12.1012011955314,13.7941262660084,10.2635413989049,10.7000420663358,7.0757959117381,8.45550553880009,4.8724896771059,2.58703370739016,12.7185115830377,9.45530400839096,9.32540958068929,10.7405908889512,6.11703948296315,5.2237824978325,6.99659263787008,8.16040493955822,32.3018066164088,33.1978800177983,21.0280989552739,7.45652781127807,7.97388603935727,6.66229627405755,6.62885259638589,4.72234156193769,6.17068451549513,5.58081467400979,5.36546802799238,6.18856314545998,6.25327429671226,3.94001913789829,3.08061476274252,2.92399974850665,3.95190207523891,2.81833479396781,9.04246778825747,9.67303356365274,0.660837565967596,1.85115396664481,8.10495352033889,6.96710015581316,5.7990357594942,4.63872106633688,3.11329261382818,3.99473814836374,3.32170343081158,4.28217282282428,5.27803938480566,4.37704238490532,3.11942539390592,3.59527763461689,1.94524244887225,2.38969527905241,17.4494468876835,9.02563249616858,7.88954149711563,6.10953983535943,6.20647958936402,6.17195215034803,5.43834219268613,5.75679577120448,4.55296310739987,5.05928372079382,2.96452627087149,7.00749444007595,9.23827277032054,7.19558759631532,4.66578279193557,5.06472035480075,7.38414970166117,6.04161888646702,5.67473293712624,6.31491250332587,1.43768206527355,4.09355042435354,7.17686648163489,5.05157755894223,5.56131981917928,5.78932225636041,3.32555742299888,11.7484675297701,8.47417877498535,8.14776411720903,5.16318546234705,4.35516269348721,3.80869825417622,4.87834119644497,5.2019597555043,4.20782910332672,3.6674596791222,4.42430949732493,4.31712454664739,4.33947175744535,1.50791283939272,3.80733978673097,1.96705709207614,3.03530420935206,5.45872005958493,6.68106613575558,13.9344703570174,3.02965112645248,11.042787679569,10.9322848403059,7.97066571611356,8.60287672629187,7.12955757063661,7.64306633129848,10.1202675418724,10.5212108848072,6.32460444714438,3.21321316421807,7.52282451603824,10.3278050127008,7.4928001302645,4.94910368917606,2.65490276679926,10.9251286269742,11.4882951646605,8.29862350925952,7.67784921490009,5.22639751504677,4.65170927702798,6.18007340111759,9.26893183800275,4.42451461110142,7.37930260024991,5.15677716240934,6.12791290356818,9.90336017172206,12.6771510107099,10.2881776815164,7.80297028026004,6.0645397984704,7.24015690649332,10.3518082698964,8.91752490642099,8.89694697628045,5.51320995137405,2.80306630000516,4.19807509409354,5.36785031860587,5.96861720015682,4.92422699235184,2.62332752966866,3.70850604021019,3.2465467351592,4.95328483111734,7.03739204004904,9.41842285023455,5.33107488111998,5.0331198105435,11.8984900995699,11.47601909054,12.1615976947893,2.86401185404534,7.43389584915668,5.69294507955176,6.48032044930808,4.39085421630384,5.8957892211468,6.60835297285622,4.05001933054146,3.92633912976044,1.42576470620972,3.10669656543463,44.531742156051,9.8680920389026,9.10021697514037,11.2781689239548,15.1116993468945,10.4752797804282,9.15386461436881,10.2861464026721,16.5677764192623,47.5920718027232,30.8192106695916,6.00421129193539,13.9880398550213,19.001527075493,14.551132173513,11.2786818270513,12.715606706001,12.5003267500768,12.7012993370136,10.3995443446592,11.27860738494,8.4693995514946,7.50425681696094,8.27421838106833,5.14258369598903,1.58711268530648,5.54964883435162,11.2142320761845,7.05115388729129,3.28422309854724,7.88266396894964,4.76194223094889,3.64426244434412,4.51414893631827,11.2950368523413,12.889106622201,6.30185064783336,12.8889886757766,8.22099023724771,8.3093328712867,10.1253375034771,7.20513925158753,9.06284817968409,5.1776031175182,19.408233998241,5.58634822761443,9.73181552798565,7.53630822911712,7.54607385460736,6.80220981265052,6.22290837844523,4.12070114477788,4.81378814387723,7.07552192938633,4.81610669791456,5.84741658296836,4.12022632867483,5.05798703998467,5.39893408182765,3.81034953026459,3.47652977834566,5.20854895252004,6.1812885120496,4.41596760403192,2.74295401908332,3.01708870470874,6.67621331852499,4.36039249896986,5.55245344450451,3.55381353145041,5.85369513192872,6.83981249738391,6.3827933507555,3.92799590160417,5.33857581558784,4.23569274214923,4.09231043169689,5.57772628269478,3.85813221962283,5.9954538705107,3.04111090979031,4.94203424311086,6.12122662620299,5.51478547798789,5.56482805489012 | ||
|short_description=p3@Swi5 | |||
}} | }} |
Latest revision as of 14:07, 26 September 2015
Short description: | p3@Swi5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Swi5_5end |
Coexpression cluster: | MCL_coexpression_mm9:3343 |
Association with transcript: | 8bp_to_ENSMUST00000113397_5end |
EntrezGene: | Swi5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.10e-11 | 44 |
neurectodermal cell | 1.10e-11 | 44 |
neural cell | 1.27e-11 | 43 |
neuron | 2.46e-07 | 33 |
neuronal stem cell | 2.46e-07 | 33 |
neuroblast | 2.46e-07 | 33 |
electrically signaling cell | 2.46e-07 | 33 |
electrically responsive cell | 3.72e-07 | 39 |
electrically active cell | 3.72e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.69e-12 | 75 |
central nervous system | 1.26e-11 | 73 |
neurectoderm | 8.30e-09 | 64 |
neural plate | 8.30e-09 | 64 |
presumptive neural plate | 8.30e-09 | 64 |
gray matter | 2.20e-08 | 34 |
ectoderm-derived structure | 3.08e-08 | 95 |
ectoderm | 3.08e-08 | 95 |
presumptive ectoderm | 3.08e-08 | 95 |
neural tube | 4.46e-08 | 52 |
neural rod | 4.46e-08 | 52 |
future spinal cord | 4.46e-08 | 52 |
neural keel | 4.46e-08 | 52 |
regional part of nervous system | 7.44e-08 | 54 |
regional part of forebrain | 1.10e-07 | 39 |
forebrain | 1.10e-07 | 39 |
future forebrain | 1.10e-07 | 39 |
anterior neural tube | 1.54e-07 | 40 |
pre-chordal neural plate | 2.08e-07 | 49 |
regional part of brain | 5.12e-07 | 46 |
ecto-epithelium | 6.85e-07 | 73 |
brain grey matter | 9.69e-07 | 29 |
regional part of telencephalon | 9.69e-07 | 29 |
telencephalon | 9.69e-07 | 29 |