FFCP PHASE1:Mm9::chr1:173341474..173341513,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr1:173341474..173341513,+ to FFCP PHASE1:Mm9::chr1:173341474..173341513,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=22278 | |EntrezGene=22278 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000159466_5end | |||
|cluster_id=chr1:173341474..173341513,+ | |||
|description=CAGE_peak_2_at_Usf1_5end | |||
|id=chr1:173341474..173341513,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.47e-11!23;CL:0000337!5.47e-11!23;CL:0000540!2.19e-10!33;CL:0000047!2.19e-10!33;CL:0000031!2.19e-10!33;CL:0000404!2.19e-10!33;CL:0000221!8.64e-10!44;CL:0000133!8.64e-10!44;CL:0002319!2.02e-09!43;CL:0000723!5.16e-09!91;CL:0000048!5.16e-09!91;CL:0000034!1.81e-08!97;CL:0000393!7.44e-08!39;CL:0000211!7.44e-08!39;CL:0000055!4.27e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.47e-11,23;CL:0000337,5.47e-11,23;CL:0000540,2.19e-10,33;CL:0000047,2.19e-10,33;CL:0000031,2.19e-10,33;CL:0000404,2.19e-10,33;CL:0000221,8.64e-10,44;CL:0000133,8.64e-10,44;CL:0002319,2.02e-09,43;CL:0000723,5.16e-09,91;CL:0000048,5.16e-09,91;CL:0000034,1.81e-08,97;CL:0000393,7.44e-08,39;CL:0000211,7.44e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.71e-21,73;UBERON:0001016,8.81e-20,75;UBERON:0000073,3.02e-18,54;UBERON:0001049,3.11e-18,52;UBERON:0005068,3.11e-18,52;UBERON:0006241,3.11e-18,52;UBERON:0007135,3.11e-18,52;UBERON:0002346,4.54e-18,64;UBERON:0003075,4.54e-18,64;UBERON:0007284,4.54e-18,64;UBERON:0003080,7.55e-16,40;UBERON:0010371,8.11e-16,73;UBERON:0004121,8.48e-16,95;UBERON:0000924,8.48e-16,95;UBERON:0006601,8.48e-16,95;UBERON:0002616,9.16e-16,46;UBERON:0000955,1.16e-15,47;UBERON:0006238,1.16e-15,47;UBERON:0002780,1.24e-15,39;UBERON:0001890,1.24e-15,39;UBERON:0006240,1.24e-15,39;UBERON:0003056,1.67e-15,49;UBERON:0002020,2.19e-15,34;UBERON:0003528,5.39e-13,29;UBERON:0002791,5.39e-13,29;UBERON:0001893,5.39e-13,29;UBERON:0010314,4.25e-10,92;UBERON:0000956,6.44e-10,21;UBERON:0001869,6.44e-10,21;UBERON:0000203,6.44e-10,21;UBERON:0002619,8.43e-08,17 | |||
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| ||
|short_description=p2@Usf1 | |||
}} | }} |
Latest revision as of 19:02, 26 September 2015
Short description: | p2@Usf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Usf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000159466_5end |
EntrezGene: | Usf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.47e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.47e-11 | 23 |
neuron | 2.19e-10 | 33 |
neuronal stem cell | 2.19e-10 | 33 |
neuroblast | 2.19e-10 | 33 |
electrically signaling cell | 2.19e-10 | 33 |
ectodermal cell | 8.64e-10 | 44 |
neurectodermal cell | 8.64e-10 | 44 |
neural cell | 2.02e-09 | 43 |
somatic stem cell | 5.16e-09 | 91 |
multi fate stem cell | 5.16e-09 | 91 |
stem cell | 1.81e-08 | 97 |
electrically responsive cell | 7.44e-08 | 39 |
electrically active cell | 7.44e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.71e-21 | 73 |
nervous system | 8.81e-20 | 75 |
regional part of nervous system | 3.02e-18 | 54 |
neural tube | 3.11e-18 | 52 |
neural rod | 3.11e-18 | 52 |
future spinal cord | 3.11e-18 | 52 |
neural keel | 3.11e-18 | 52 |
neurectoderm | 4.54e-18 | 64 |
neural plate | 4.54e-18 | 64 |
presumptive neural plate | 4.54e-18 | 64 |
anterior neural tube | 7.55e-16 | 40 |
ecto-epithelium | 8.11e-16 | 73 |
ectoderm-derived structure | 8.48e-16 | 95 |
ectoderm | 8.48e-16 | 95 |
presumptive ectoderm | 8.48e-16 | 95 |
regional part of brain | 9.16e-16 | 46 |
brain | 1.16e-15 | 47 |
future brain | 1.16e-15 | 47 |
regional part of forebrain | 1.24e-15 | 39 |
forebrain | 1.24e-15 | 39 |
future forebrain | 1.24e-15 | 39 |
pre-chordal neural plate | 1.67e-15 | 49 |
gray matter | 2.19e-15 | 34 |
brain grey matter | 5.39e-13 | 29 |
regional part of telencephalon | 5.39e-13 | 29 |
telencephalon | 5.39e-13 | 29 |
structure with developmental contribution from neural crest | 4.25e-10 | 92 |
cerebral cortex | 6.44e-10 | 21 |
cerebral hemisphere | 6.44e-10 | 21 |
pallium | 6.44e-10 | 21 |
regional part of cerebral cortex | 8.43e-08 | 17 |