FFCP PHASE1:Mm9::chr18:35721834..35721851,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr18:35721834..35721851,+ to FFCP PHASE1:Mm9::chr18:35721834..35721851,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=17184 | |EntrezGene=17184 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q6ZQ61,Q8K310,Q5BL18 | |UniProt=Q6ZQ61,Q8K310,Q5BL18 | ||
|association_with_transcript=22bp_to_ENSMUST00000041514,ENSMUST00000166793,NM_010771,uc008emg.2_5end | |||
|cluster_id=chr18:35721834..35721851,+ | |||
|description=CAGE_peak_2_at_Matr3_5end | |||
|id=chr18:35721834..35721851,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.52e-10!75;UBERON:0001016!1.52e-10!75;UBERON:0002346!1.81e-10!71;UBERON:0003075!1.81e-10!71;UBERON:0007284!1.81e-10!71;UBERON:0001017!3.38e-10!73;UBERON:0005743!3.38e-10!73;UBERON:0004121!3.23e-09!102;UBERON:0000924!3.23e-09!102;UBERON:0006601!3.23e-09!102;UBERON:0000033!3.27e-09!63;UBERON:0000955!1.46e-08!50;UBERON:0006238!1.46e-08!50;UBERON:0001049!1.54e-08!52;UBERON:0005068!1.54e-08!52;UBERON:0006241!1.54e-08!52;UBERON:0007135!1.54e-08!52;UBERON:0003056!3.00e-08!49;UBERON:0002616!3.87e-08!49;UBERON:0002021!7.73e-08!10;UBERON:0000411!7.73e-08!10;UBERON:0001950!7.73e-08!10;UBERON:0002020!7.78e-08!34;UBERON:0000153!2.87e-07!94;UBERON:0007811!7.79e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.16e-11,64;UBERON:0003075,2.16e-11,64;UBERON:0007284,2.16e-11,64;UBERON:0001016,1.56e-10,75;UBERON:0001017,3.46e-10,73;UBERON:0004121,9.55e-10,95;UBERON:0000924,9.55e-10,95;UBERON:0006601,9.55e-10,95;UBERON:0010314,1.18e-09,92;UBERON:0000073,2.02e-09,54;UBERON:0010371,2.84e-09,73;UBERON:0001049,1.60e-08,52;UBERON:0005068,1.60e-08,52;UBERON:0006241,1.60e-08,52;UBERON:0007135,1.60e-08,52;UBERON:0003056,3.10e-08,49;UBERON:0002021,7.69e-08,10;UBERON:0000411,7.69e-08,10;UBERON:0001950,7.69e-08,10;UBERON:0002020,8.09e-08,34;UBERON:0000955,2.90e-07,47;UBERON:0006238,2.90e-07,47;UBERON:0002616,7.30e-07,46 | |||
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| |phase1_expression=4.48416771893423,1.39590163055744,0,0.60492842261366,0.500895729946347,2.51818907867835,1.63528848416868,3.74457637980571,10.8407316056783,8.89445200023575,4.45166717386313,3.58974715479014,3.76641605848653,3.75907730401689,3.33109761815663,2.42970320867791,0.699561878128147,2.83915948822414,3.97631857456642,5.09267582157636,12.7564935226605,3.27660138962921,4.4403964153619,0.799962113967033,2.2940928106717,2.29692785646008,2.58457197695445,1.50829862880122,1.52018735565099,1.26015064879965,0.665191531965914,2.54012269383853,4.30545351309199,0,1.44425809875637,1.16364251750945,1.63335485009895,0.837063261473815,1.5626706890476,4.18818995179039,4.70585190424811,2.04913645487534,2.91306211818692,4.28049181116963,4.8660926985367,5.13930906052708,2.34717403304412,0.436050312760893,0.659058548203415,1.36100929351998,0.139986421625363,0,7.88578248471361,2.17608642603403,4.03312558970957,3.08711323243136,4.29800159908135,2.57836046138721,1.61853168687678,6.87688273053643,4.43681982454325,1.69422266034566,0,0,0,0,0.299600110518405,0.768436610643109,4.45865332926454,3.10513658162888,2.94454945891935,5.14171771926846,3.97563373712904,3.30725157880376,2.20444583341944,6.43453150627015,14.3150645299205,10.4703617229854,12.2885226604995,3.69281605644543,2.28719109006024,7.29278718779464,5.02529398202486,18.5711661310454,9.93188610549266,13.258286346315,12.386336229522,7.26957838718672,5.45228591998925,4.98772296704784,3.18850937571846,0,2.03991400112325,0.539703191637817,4.54843492213368,1.79210754838934,4.21333260395256,6.47635225796619,4.41636207824877,3.88673531961374,3.94361575374705,1.28326477414318,5.09610479413291,0,1.94841936910093,2.53359865475099,1.51657333504435,3.76806803072898,4.91981978929626,4.30482203287992,3.46970653532272,3.04465478312141,4.15107895060905,2.56228488939458,7.17291113527799,3.26733137457156,4.6967043869531,2.4581890676385,0,4.85300549842228,1.54589062922275,2.90925151881133,3.72783522436244,12.0040126774734,6.28340120440365,1.27728527604296,3.95389910869537,1.79970819298022,4.3203877204842,12.5824137100051,16.4700217014706,18.9738071690425,16.6871347384585,18.4115129277838,12.0517065844545,13.7905073607594,5.49932564791708,2.23932547098167,3.28539585963777,2.52530227063769,5.07469727554544,7.12696523743766,8.82304436046211,5.72678307775717,6.39543092022482,7.30248205623644,7.49613796477831,5.17406741478031,4.31135985865684,9.07709184805532,5.10258260075452,3.5071317188412,3.89266148915837,5.2237824978325,3.08673204611915,5.57295947091781,2.80885274925294,2.83082697826187,4.26245249093389,6.42089894860056,6.3322036194896,5.04173772090842,6.62885259638589,1.96764231747404,4.16521204795921,4.41814495025775,4.02410102099429,5.7215017759913,5.43047504714485,3.61168420974009,2.43206428637567,3.50879969820798,4.39100230582101,4.02619256281115,15.1408762966172,18.6257348406505,0.330418782983798,1.32225283331772,8.10495352033889,4.87697010906921,4.89696353023955,4.43703754171354,3.7804267453628,3.42406127002606,0.949058123089023,2.47048432086016,2.76468729680296,1.79060824837036,2.53453313254856,4.49409704327111,2.80979464837102,1.1948476395262,3.22435431620239,4.68418901699888,11.270773567308,5.29493452397817,2.71533482034676,5.6810014111158,3.60448261608267,3.09981310757165,2.19798218977925,3.94870924549762,4.44678940630723,4.50481785433454,2.75182593158484,1.79889689907883,2.43432145666204,2.17059443777175,1.78238096246994,2.01387296215567,2.2698931748505,3.29473695825698,2.87536413054709,1.86070473834252,1.5601883655728,0.757736633841335,1.4351793081753,2.41221760681684,2.40179147216586,6.253216588426,6.51859905768104,4.41337223015489,7.51008794523207,4.85768146581266,3.09456733151818,4.29294025287157,4.72905432318573,1.7717175171902,5.26200736569707,3.27726629431476,5.35323443784276,3.61622646453779,3.01582567878545,4.35124547054968,0,2.75936746304733,13.6468001489623,10.7834751664827,3.27869890753351,3.28212205365685,8.83423014365519,5.46614242015294,7.53981892064796,9.31978312014953,6.90675889655422,8.20921939287614,6.47697122679831,6.42962887404886,5.53402889125133,11.2462460747632,4.11626247103979,4.09550888434687,6.35259141478947,3.46437258242324,1.32745138339963,2.91336763385978,2.72091201268276,2.07465587731488,1.77181135728464,1.84461088766356,2.06742634534577,2.18120237686503,1.78248689192361,2.52829406348653,2.10837217149998,3.09406629744561,4.08527526904546,4.50152735078276,1.29358683782755,3.64372959553707,8.6896714484714,3.0322698992352,4.60737257685939,2.13125464380219,3.98941903708308,3.81297727554876,2.42581237860458,1.97863503529776,5.9741837877485,3.1362720962641,2.626191568069,3.93938159388147,0.874442509889552,10.9400928186201,2.22132145037209,4.95328483111734,4.07427960213366,2.82552685507037,2.05041341581538,2.28778173206523,2.54967644990783,5.03825228365169,4.83699908315483,1.90934123603023,6.48488786841327,5.08298667817122,3.88819226958485,4.18176592028937,3.27543845619266,3.2367443132357,2.72756403893609,2.87931536182433,2.59229946583586,1.24267862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| ||
|short_description=p2@Matr3 | |||
}} | }} |
Latest revision as of 04:44, 27 September 2015
Short description: | p2@Matr3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Matr3_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 22bp_to_ENSMUST00000041514, ENSMUST00000166793, NM_010771, uc008emg.2_5end |
EntrezGene: | Matr3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.16e-11 | 64 |
neural plate | 2.16e-11 | 64 |
presumptive neural plate | 2.16e-11 | 64 |
nervous system | 1.56e-10 | 75 |
central nervous system | 3.46e-10 | 73 |
ectoderm-derived structure | 9.55e-10 | 95 |
ectoderm | 9.55e-10 | 95 |
presumptive ectoderm | 9.55e-10 | 95 |
structure with developmental contribution from neural crest | 1.18e-09 | 92 |
regional part of nervous system | 2.02e-09 | 54 |
ecto-epithelium | 2.84e-09 | 73 |
neural tube | 1.60e-08 | 52 |
neural rod | 1.60e-08 | 52 |
future spinal cord | 1.60e-08 | 52 |
neural keel | 1.60e-08 | 52 |
pre-chordal neural plate | 3.10e-08 | 49 |
occipital lobe | 7.69e-08 | 10 |
visual cortex | 7.69e-08 | 10 |
neocortex | 7.69e-08 | 10 |
gray matter | 8.09e-08 | 34 |
brain | 2.90e-07 | 47 |
future brain | 2.90e-07 | 47 |
regional part of brain | 7.30e-07 | 46 |