FFCP PHASE1:Mm9::chr15:81575602..81575618,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr15:81575602..81575618,+ to FFCP PHASE1:Mm9::chr15:81575602..81575618,+: NSchange) |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20286 | |EntrezGene=20286 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=F8VPP8,Q3UGE6 | |UniProt=F8VPP8,Q3UGE6 | ||
|association_with_transcript=324bp_to_ENSMUST00000109554,NM_001081016,uc007wxd.1,uc007wxe.1_5end | |||
|cluster_id=chr15:81575602..81575618,+ | |||
|description=CAGE_peak_3_at_Zc3h7b_5end | |||
|id=chr15:81575602..81575618,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.10e-14!33;CL:0000047!2.10e-14!33;CL:0000031!2.10e-14!33;CL:0000404!2.10e-14!33;CL:0000221!3.22e-14!44;CL:0000133!3.22e-14!44;CL:0002319!4.49e-14!43;CL:0000055!4.59e-13!50;CL:0000393!1.21e-12!39;CL:0000211!1.21e-12!39;CL:0000117!3.84e-09!23;CL:0000337!3.84e-09!23;CL:0002321!7.18e-08!70;CL:0000220!7.18e-08!70;CL:0000107!9.87e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.88e-15,33;CL:0000047,4.88e-15,33;CL:0000031,4.88e-15,33;CL:0000404,4.88e-15,33;CL:0000221,1.29e-14,44;CL:0000133,1.29e-14,44;CL:0002319,1.80e-14,43;CL:0000393,3.42e-13,39;CL:0000211,3.42e-13,39;CL:0000117,1.18e-09,23;CL:0000337,1.18e-09,23;CL:0002321,5.91e-09,70;CL:0000723,4.38e-07,91;CL:0000048,4.38e-07,91;CL:0000034,7.32e-07,97;CL:0000107,8.12e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.89e-14!73;UBERON:0005743!1.89e-14!73;UBERON:0000073!5.43e-14!75;UBERON:0001016!5.43e-14!75;UBERON:0004121!2.08e-12!102;UBERON:0000924!2.08e-12!102;UBERON:0006601!2.08e-12!102;UBERON:0002346!3.59e-10!71;UBERON:0003075!3.59e-10!71;UBERON:0007284!3.59e-10!71;UBERON:0000025!2.24e-08!114;UBERON:0004111!1.17e-07!122;UBERON:0001049!1.92e-07!52;UBERON:0005068!1.92e-07!52;UBERON:0006241!1.92e-07!52;UBERON:0007135!1.92e-07!52;UBERON:0002410!9.87e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.48e-15,73;UBERON:0001016,3.07e-14,75;UBERON:0004121,9.71e-13,95;UBERON:0000924,9.71e-13,95;UBERON:0006601,9.71e-13,95;UBERON:0002346,8.42e-11,64;UBERON:0003075,8.42e-11,64;UBERON:0007284,8.42e-11,64;UBERON:0010314,1.07e-10,92;UBERON:0010371,1.78e-08,73;UBERON:0000025,2.21e-08,114;UBERON:0000073,9.53e-08,54;UBERON:0004111,1.33e-07,122;UBERON:0001049,1.43e-07,52;UBERON:0005068,1.43e-07,52;UBERON:0006241,1.43e-07,52;UBERON:0007135,1.43e-07,52;UBERON:0002020,6.86e-07,34;UBERON:0002410,8.12e-07,9 | |||
|phase1_expression=1.92178616525753,0,0,0,0,1.00727563147134,2.33612640595526,0.387369970324729,0.703943610758334,2.80877431586392,0.171217968225505,0.478632953972018,0.513602189793617,0.524522414513984,1.66554880907831,1.41732687172878,2.79824751251259,1.89277299214943,1.91960207048034,1.27316895539409,2.29616883407888,2.97872853602656,1.82839852397255,1.27993938234725,0.91763712426868,0.57423196411502,0.430761996159075,0.430942465371778,1.14014051673824,0.504060259519861,0.443461021310609,3.81018404075779,0,0,1.73310971850765,1.82858109894342,1.02084678131185,0,0,0,0,0,0,1.00717454380462,1.31790010585369,1.83546752161682,3.9119567217402,1.52617609466313,1.5378032791413,1.36100929351998,1.67983705950435,5.75010257459886,2.01339127269284,0.725362142011344,1.68046899571232,2.05807548828758,1.14613375975503,2.06268836910977,3.43937983461316,3.70293685490423,3.80298842103708,1.0165335962074,1.77858959222228,2.2497492932035,0.988866362566974,2.1314403448383,2.39680088414724,2.30530983192933,3.11068836925433,2.02508907497536,3.57552434297349,4.57041575046086,3.97563373712904,2.9397791811589,2.87536413054709,2.75765635983006,0,5.87361755191863,5.06901559745603,3.95658863190582,3.20206752608434,3.12548022334056,3.90856198601933,0,3.81995619442025,4.41942878210502,2.98980529678116,3.91438836233131,0.908714319998209,1.88928900266964,4.34796733052517,2.58127163094416,2.719885334831,2.69851595818909,1.94932925234301,4.92829575807069,2.10666630197628,0.681721290312231,1.03914401841148,0,2.11265129665021,0,0,0,0.216491041011214,2.78695852022608,0.505524445014783,2.51204535381932,0.776813650941515,2.82040064223167,1.04091196059682,1.52232739156071,1.15307748628029,1.05505848386836,2.58695155698551,1.88499886994513,1.23597483867187,1.59059292611903,1.76922110389975,1.29413479957927,1.32504911076236,2.42437626567611,0,2.92780797011547,2.51336048176146,1.53274233125155,2.87556298814209,0.599902730993408,2.66847476853436,1.9472783122627,1.83000241127451,3.01570445070875,0.521472960576829,1.53429274398198,2.70124457927428,2.75810147215188,1.12023300235348,1.99051152976149,1.0108910337347,3.57751155007006,2.34216797332867,2.29902104433473,1.44049703844279,2.10986744970001,3.19771546011241,2.43416068541215,3.93547243150861,1.29351685369508,1.72454394346274,1.51284864134255,1.23165786914764,0.219195732427575,1.66828349535359,2.43776516565517,1.23469281844766,1.59227413454795,1.40442637462647,2.31613116403244,2.27330799516474,2.27838349789052,0.938104239924385,0.540186184383045,1.42046841351126,1.18058539048442,1.54267112887378,1.39520366850245,1.87791380979733,2.21854150497622,2.13927804887525,2.62667942526552,3.72916523910936,3.07019973593198,0.878200461164203,3.35516046900929,1.26173969138476,3.80747065803352,0.330418782983798,0.264450566663544,1.49301775374664,0.928946687441754,1.67527699718721,1.00841762311671,1.11189021922435,0.380451252225118,1.89811624617805,0.494096864172033,0.502670417600539,0.596869416123452,1.36474860983384,0.898819408654221,1.08069024937347,1.1948476395262,2.0863469104839,0.913988100877831,1.1270773567308,0.610953983535943,1.74557238450863,2.66516115583211,2.21327879934901,1.77132177575523,2.04098346193787,0.863780147452604,1.77871576252289,1.16791574001266,1.57247196090562,1.12431056192427,0.405720242777006,0.72353147925725,0.25462585178142,0.863088412352432,1.78348749452539,1.92192989231657,0,2.23284568601102,1.24815069245824,3.03094653536534,1.25578189465339,1.4473305640901,2.21703828199926,1.13694847062291,2.28150967018836,1.86719594352707,1.87752198630802,1.34005005953453,2.14239276797412,3.31727201358258,1.7339865851681,3.10050565508285,1.91345722388985,1.96635977658886,2.93564469172023,2.31438493730419,1.50791283939272,1.08781136763742,1.47529281905711,0.827810238914197,1.76605648986571,2.81308047821288,1.14754461763673,1.00988370881749,4.10160685241134,3.12350995437311,6.46270193198397,3.34556317133573,4.90157082981267,3.11384183867716,4.85772842009873,5.26060544240361,3.95287777946523,1.28528526568723,1.84522110770749,1.24645922567079,3.25773918707152,3.13443233647817,2.65490276679926,0.971122544619926,2.41858845571801,1.13163047853539,1.77181135728464,1.84461088766356,1.29214146584111,3.27180356529755,1.78248689192361,2.84433082142234,2.10837217149998,3.09406629744561,1.02131881726136,1.62054984628179,1.68166288917581,1.50035924522115,1.59606210278046,0.891844088010353,1.31639216481697,1.8267896946876,1.17335854031855,0.42366414172764,0.661585194164886,0.49465875882444,1.77610869365496,0.784068024066026,1.19372344003136,0.328281799490123,0.582961673259701,2.59595422814714,1.02522528478712,2.68302928352189,1.48155621895769,1.50694765603753,2.05041341581538,1.37266903923914,3.73952545986482,2.51912614182584,3.17859939750175,0,1.10717597753397,2.43983360552218,1.72808545314882,1.25452977608681,0.655087691238533,0.944050424693745,1.81837602595739,0.785267825952089,1.94422459937689,0.621339313086926,0.56369293868419,2.69129782879162,1.82004339502807,1.55560950675238,1.93739735216597,2.02747350588934,3.75543163666413,1.5624526181274,2.09718688851422,1.44950472495604,1.44015003128933,0.316011120628178,1.21635129174099,1.43795340030758,1.81889152168913,0.716106782669926,0.79472541912506,1.68273629327956,1.32920574457119,1.31256384932592,1.06689529317,0.705783295957884,0.779663045918019,0.769694733122636,1.40252282617883,1.81384306892169,0.221985953374065,0.448569283047378,0.335769232728157,1.35232715822533,1.31377732815827,1.46521299413812,1.07184189539533,1.50471631210609,3.95326289831947,2.30162618253588,2.29158205375759,3.95262319390481,2.05524755931193,1.5107877947794,2.70009000092722,0.45032120322422,1.35942722695261,1.03552062350364,1.86817225651518,2.39414924040619,1.70733605754134,1.45864030240976,1.46729213839588,1.10306105070008,0.888986911206461,0.824140228955577,2.24643446714271,2.27427490587418,0.25347929989024,1.50901073108861,0.936415074698824,1.02440243847791,1.26358031702349,1.42888107384922,1.50649623728312,0.77163688185482,1.23625770240992,0.735994600671987,1.02860775715625,1.4198064492747,0.476872379894642,0.872078499793971,0.941093804153306,1.86152137361688,0.914639864363863,0,1.7654534799962,0.561142271657738,1.66089025373844,0.985044823755635,1.22769312950907,0.929621047115796,1.92906610981141,1.24905288968973,1.16965804222704,1.50409737833809,1.91288332068843,2.20591419119516,1.85494268496337 | |phase1_expression=1.92178616525753,0,0,0,0,1.00727563147134,2.33612640595526,0.387369970324729,0.703943610758334,2.80877431586392,0.171217968225505,0.478632953972018,0.513602189793617,0.524522414513984,1.66554880907831,1.41732687172878,2.79824751251259,1.89277299214943,1.91960207048034,1.27316895539409,2.29616883407888,2.97872853602656,1.82839852397255,1.27993938234725,0.91763712426868,0.57423196411502,0.430761996159075,0.430942465371778,1.14014051673824,0.504060259519861,0.443461021310609,3.81018404075779,0,0,1.73310971850765,1.82858109894342,1.02084678131185,0,0,0,0,0,0,1.00717454380462,1.31790010585369,1.83546752161682,3.9119567217402,1.52617609466313,1.5378032791413,1.36100929351998,1.67983705950435,5.75010257459886,2.01339127269284,0.725362142011344,1.68046899571232,2.05807548828758,1.14613375975503,2.06268836910977,3.43937983461316,3.70293685490423,3.80298842103708,1.0165335962074,1.77858959222228,2.2497492932035,0.988866362566974,2.1314403448383,2.39680088414724,2.30530983192933,3.11068836925433,2.02508907497536,3.57552434297349,4.57041575046086,3.97563373712904,2.9397791811589,2.87536413054709,2.75765635983006,0,5.87361755191863,5.06901559745603,3.95658863190582,3.20206752608434,3.12548022334056,3.90856198601933,0,3.81995619442025,4.41942878210502,2.98980529678116,3.91438836233131,0.908714319998209,1.88928900266964,4.34796733052517,2.58127163094416,2.719885334831,2.69851595818909,1.94932925234301,4.92829575807069,2.10666630197628,0.681721290312231,1.03914401841148,0,2.11265129665021,0,0,0,0.216491041011214,2.78695852022608,0.505524445014783,2.51204535381932,0.776813650941515,2.82040064223167,1.04091196059682,1.52232739156071,1.15307748628029,1.05505848386836,2.58695155698551,1.88499886994513,1.23597483867187,1.59059292611903,1.76922110389975,1.29413479957927,1.32504911076236,2.42437626567611,0,2.92780797011547,2.51336048176146,1.53274233125155,2.87556298814209,0.599902730993408,2.66847476853436,1.9472783122627,1.83000241127451,3.01570445070875,0.521472960576829,1.53429274398198,2.70124457927428,2.75810147215188,1.12023300235348,1.99051152976149,1.0108910337347,3.57751155007006,2.34216797332867,2.29902104433473,1.44049703844279,2.10986744970001,3.19771546011241,2.43416068541215,3.93547243150861,1.29351685369508,1.72454394346274,1.51284864134255,1.23165786914764,0.219195732427575,1.66828349535359,2.43776516565517,1.23469281844766,1.59227413454795,1.40442637462647,2.31613116403244,2.27330799516474,2.27838349789052,0.938104239924385,0.540186184383045,1.42046841351126,1.18058539048442,1.54267112887378,1.39520366850245,1.87791380979733,2.21854150497622,2.13927804887525,2.62667942526552,3.72916523910936,3.07019973593198,0.878200461164203,3.35516046900929,1.26173969138476,3.80747065803352,0.330418782983798,0.264450566663544,1.49301775374664,0.928946687441754,1.67527699718721,1.00841762311671,1.11189021922435,0.380451252225118,1.89811624617805,0.494096864172033,0.502670417600539,0.596869416123452,1.36474860983384,0.898819408654221,1.08069024937347,1.1948476395262,2.0863469104839,0.913988100877831,1.1270773567308,0.610953983535943,1.74557238450863,2.66516115583211,2.21327879934901,1.77132177575523,2.04098346193787,0.863780147452604,1.77871576252289,1.16791574001266,1.57247196090562,1.12431056192427,0.405720242777006,0.72353147925725,0.25462585178142,0.863088412352432,1.78348749452539,1.92192989231657,0,2.23284568601102,1.24815069245824,3.03094653536534,1.25578189465339,1.4473305640901,2.21703828199926,1.13694847062291,2.28150967018836,1.86719594352707,1.87752198630802,1.34005005953453,2.14239276797412,3.31727201358258,1.7339865851681,3.10050565508285,1.91345722388985,1.96635977658886,2.93564469172023,2.31438493730419,1.50791283939272,1.08781136763742,1.47529281905711,0.827810238914197,1.76605648986571,2.81308047821288,1.14754461763673,1.00988370881749,4.10160685241134,3.12350995437311,6.46270193198397,3.34556317133573,4.90157082981267,3.11384183867716,4.85772842009873,5.26060544240361,3.95287777946523,1.28528526568723,1.84522110770749,1.24645922567079,3.25773918707152,3.13443233647817,2.65490276679926,0.971122544619926,2.41858845571801,1.13163047853539,1.77181135728464,1.84461088766356,1.29214146584111,3.27180356529755,1.78248689192361,2.84433082142234,2.10837217149998,3.09406629744561,1.02131881726136,1.62054984628179,1.68166288917581,1.50035924522115,1.59606210278046,0.891844088010353,1.31639216481697,1.8267896946876,1.17335854031855,0.42366414172764,0.661585194164886,0.49465875882444,1.77610869365496,0.784068024066026,1.19372344003136,0.328281799490123,0.582961673259701,2.59595422814714,1.02522528478712,2.68302928352189,1.48155621895769,1.50694765603753,2.05041341581538,1.37266903923914,3.73952545986482,2.51912614182584,3.17859939750175,0,1.10717597753397,2.43983360552218,1.72808545314882,1.25452977608681,0.655087691238533,0.944050424693745,1.81837602595739,0.785267825952089,1.94422459937689,0.621339313086926,0.56369293868419,2.69129782879162,1.82004339502807,1.55560950675238,1.93739735216597,2.02747350588934,3.75543163666413,1.5624526181274,2.09718688851422,1.44950472495604,1.44015003128933,0.316011120628178,1.21635129174099,1.43795340030758,1.81889152168913,0.716106782669926,0.79472541912506,1.68273629327956,1.32920574457119,1.31256384932592,1.06689529317,0.705783295957884,0.779663045918019,0.769694733122636,1.40252282617883,1.81384306892169,0.221985953374065,0.448569283047378,0.335769232728157,1.35232715822533,1.31377732815827,1.46521299413812,1.07184189539533,1.50471631210609,3.95326289831947,2.30162618253588,2.29158205375759,3.95262319390481,2.05524755931193,1.5107877947794,2.70009000092722,0.45032120322422,1.35942722695261,1.03552062350364,1.86817225651518,2.39414924040619,1.70733605754134,1.45864030240976,1.46729213839588,1.10306105070008,0.888986911206461,0.824140228955577,2.24643446714271,2.27427490587418,0.25347929989024,1.50901073108861,0.936415074698824,1.02440243847791,1.26358031702349,1.42888107384922,1.50649623728312,0.77163688185482,1.23625770240992,0.735994600671987,1.02860775715625,1.4198064492747,0.476872379894642,0.872078499793971,0.941093804153306,1.86152137361688,0.914639864363863,0,1.7654534799962,0.561142271657738,1.66089025373844,0.985044823755635,1.22769312950907,0.929621047115796,1.92906610981141,1.24905288968973,1.16965804222704,1.50409737833809,1.91288332068843,2.20591419119516,1.85494268496337 | ||
|short_description=p3@Zc3h7b | |||
}} | }} |
Latest revision as of 04:20, 27 September 2015
Short description: | p3@Zc3h7b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Zc3h7b_5end |
Coexpression cluster: | NA |
Association with transcript: | 324bp_to_ENSMUST00000109554, NM_001081016, uc007wxd.1, uc007wxe.1_5end |
EntrezGene: | Zc3h7b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.88e-15 | 33 |
neuronal stem cell | 4.88e-15 | 33 |
neuroblast | 4.88e-15 | 33 |
electrically signaling cell | 4.88e-15 | 33 |
ectodermal cell | 1.29e-14 | 44 |
neurectodermal cell | 1.29e-14 | 44 |
neural cell | 1.80e-14 | 43 |
electrically responsive cell | 3.42e-13 | 39 |
electrically active cell | 3.42e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.18e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.18e-09 | 23 |
embryonic cell | 5.91e-09 | 70 |
somatic stem cell | 4.38e-07 | 91 |
multi fate stem cell | 4.38e-07 | 91 |
stem cell | 7.32e-07 | 97 |
autonomic neuron | 8.12e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.48e-15 | 73 |
nervous system | 3.07e-14 | 75 |
ectoderm-derived structure | 9.71e-13 | 95 |
ectoderm | 9.71e-13 | 95 |
presumptive ectoderm | 9.71e-13 | 95 |
neurectoderm | 8.42e-11 | 64 |
neural plate | 8.42e-11 | 64 |
presumptive neural plate | 8.42e-11 | 64 |
structure with developmental contribution from neural crest | 1.07e-10 | 92 |
ecto-epithelium | 1.78e-08 | 73 |
tube | 2.21e-08 | 114 |
regional part of nervous system | 9.53e-08 | 54 |
anatomical conduit | 1.33e-07 | 122 |
neural tube | 1.43e-07 | 52 |
neural rod | 1.43e-07 | 52 |
future spinal cord | 1.43e-07 | 52 |
neural keel | 1.43e-07 | 52 |
gray matter | 6.86e-07 | 34 |
autonomic nervous system | 8.12e-07 | 9 |