FFCP PHASE1:Hg19::chrX:86772707..86772724,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:86772707..86772724,+ to FFCP PHASE1:Hg19::chrX:86772707..86772724,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56062 | |EntrezGene=56062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6355 | |HGNC=6355 | ||
|TSSclassifier=strong | |||
|UniProt=A5PKX1,Q9C0H6 | |UniProt=A5PKX1,Q9C0H6 | ||
|association_with_transcript=0bp_to_NM_019117,NM_057162,uc004efa.2,uc004efb.2_5end | |||
|cluster_id=chrX:86772707..86772724,+ | |||
|description=CAGE_peak_3_at_KLHL4_5end | |||
|id=chrX:86772707..86772724,+ | |||
|ontology_enrichment_celltype=CL:0000213!6.88e-07!57;CL:0000215!6.88e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002144;2.41e-08;3!CL:0000064;6.87e-08;3!CL:0000067;6.87e-08;3!CL:0005012;6.87e-08;3!CL:0002304;6.87e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,2.63e-08,3;CL:0000064,4.97e-08,3;CL:0000067,4.97e-08,3;CL:0005012,4.97e-08,3;CL:0002304,4.97e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.18e-21!82;UBERON:0005743!2.54e-20!86;UBERON:0000955!1.23e-18!69;UBERON:0006238!1.23e-18!69;UBERON:0003075!3.68e-18!86;UBERON:0007284!3.68e-18!86;UBERON:0000073!5.40e-18!94;UBERON:0001016!5.40e-18!94;UBERON:0002616!9.78e-18!59;UBERON:0002346!5.92e-17!90;UBERON:0001049!1.13e-14!57;UBERON:0005068!1.13e-14!57;UBERON:0006241!1.13e-14!57;UBERON:0007135!1.13e-14!57;UBERON:0003056!1.14e-14!61;UBERON:0007023!3.39e-14!115;UBERON:0000153!4.28e-14!129;UBERON:0007811!4.28e-14!129;UBERON:0003080!4.91e-14!42;UBERON:0004121!8.91e-14!169;UBERON:0002780!1.48e-13!41;UBERON:0001890!1.48e-13!41;UBERON:0006240!1.48e-13!41;UBERON:0000477!2.46e-13!286;UBERON:0000924!3.40e-13!173;UBERON:0006601!3.40e-13!173;UBERON:0001893!3.98e-13!34;UBERON:0002020!4.41e-13!34;UBERON:0003528!4.41e-13!34;UBERON:0000033!5.90e-13!123;UBERON:0002791!1.80e-12!33;UBERON:0001869!1.96e-12!32;UBERON:0000119!2.22e-11!312;UBERON:0000483!7.16e-11!309;UBERON:0004111!7.43e-10!241;UBERON:0001950!1.98e-09!20;UBERON:0000025!2.48e-09!194;UBERON:0000956!3.68e-09!25;UBERON:0000203!3.68e-09!25;UBERON:0002619!4.37e-09!22;UBERON:0000481!2.28e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;9.67e-13;11!UBERON:0001950;2.05e-10;20!UBERON:0000488;3.30e-10;4!UBERON:0007625;9.88e-10;11!UBERON:0002619;2.68e-09;22!UBERON:0010523;2.41e-08;3!UBERON:0001915;2.41e-08;3!UBERON:0001982;2.41e-08;3!UBERON:0000956;5.98e-08;25!UBERON:0000203;5.98e-08;25!UBERON:0001778;6.87e-08;3!UBERON:0001775;6.87e-08;3!UBERON:0005284;1.09e-07;5!UBERON:0001801;2.19e-07;14!UBERON:0002203;9.28e-07;6!UBERON:0001768;9.28e-07;6!UBERON:0002200;9.28e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,7.55e-13,11;UBERON:0003056,1.65e-10,61;UBERON:0000488,2.40e-10,4;UBERON:0001950,3.83e-10,20;UBERON:0001017,5.27e-10,81;UBERON:0007625,9.07e-10,11;UBERON:0002619,4.70e-09,22;UBERON:0001016,2.01e-08,89;UBERON:0010523,2.63e-08,3;UBERON:0001915,2.63e-08,3;UBERON:0001982,2.63e-08,3;UBERON:0001778,4.97e-08,3;UBERON:0001775,4.97e-08,3;UBERON:0000956,9.67e-08,25;UBERON:0000203,9.67e-08,25;UBERON:0005284,1.06e-07,5;UBERON:0000955,1.51e-07,68;UBERON:0006238,1.51e-07,68;UBERON:0001801,2.05e-07,14;UBERON:0002780,4.91e-07,41;UBERON:0001890,4.91e-07,41;UBERON:0003080,4.91e-07,41;UBERON:0006240,4.91e-07,41;UBERON:0002203,7.55e-07,6;UBERON:0001768,7.55e-07,6;UBERON:0002200,7.55e-07,6;UBERON:0001869,8.83e-07,32 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.492484232307152,0.612002073732759,0.313454721478088,0.286235987131057,0.821246550437305,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,0,0.383587685530591,0,0,0,0,0,3.11964896641424,4.87804674417641,1.66886092816939,0.851363990735132,0,0,0,0,0,0,0,0,0.79504962946682,0,1.04142150482278,0,0,0.550236083880135,0,0.258416759169329,0.35576626268671,5.02080919147005,2.01414658554573,8.36299316290364,3.90499292077071,0,0,1.42879565254528,0.898117490504679,0.788280363383256,0,0.949265659568129,0.183201743930407,0,0,0,0,0,1.19168262731897,0.573673241497627,0,0.560677600142307,0,0.24666754841716,0.622422070799533,0.67355336034844,0.163461903113459,1.05950199351452,4.60940739583999,0,0,0,0,0.117434498643765,0.323745888736263,0,0,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.795178609928912,0.232387885739037,0.621966330092223,0.504641701751257,1.82488679537915,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.220587945464788,0.435758888184812,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,5.31860211925429,0,0,0,0.0925884451585296,0.651616610620649,0,1.44331342025273,1.15930404975077,7.27933904262094,1.73239737313289,1.38895653772983,3.61482889245737,0,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,0,2.3468251462704,0.387815147273333,0,0,0,0,0,0,0,0.57191197463259,0,0,0.325736184293735,0,0,0.301439377059586,1.74306691720059,0.799783929456456,0,0,0,0,0,0,0.434343920002738,0.410952645100767,0.358121926479791,0.560425719967636,0.197030760201927,0,0,3.55732473911449,0,0,1.00509759200609,0,0,0,0,0.12269149171914,0.500170521059677,1.08506009479894,0,0,0,0,0.601892199455438,0,0,0.664225598535437,0.553107505625109,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0.164254312027618,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0.863663664408557,1.54227252690289,0,0,0.254876273045038,0,0,0,0,0,0,0.650756789328606,0,0,0,0,0,0,0.193341436584244,0.462145851343933,0,0.275673144969061,0.107420244868274,0,0.255679882248303,0.356128142586949,0,0,0,0.30347334256665,0,0,0,0.308033580176089,0,0,0.37064843820784,0,3.72158369359667,1.89827654831236,0.571890581771475,0,0,0,0,0,0.274537029736055,0.353437207037059,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0.286822704408103,0.294747123039363,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426851060090485,0,0,0,0,0,0,0,0,0,0.169291777801603,3.21176150207399,5.85219150854038,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0,3.8605408508243,0.307160702099232,0,1.1253553312841,1.11308705022906,0,0,0.398495976502139,0.552567831062295,0,0.715880777515084,0,0,0,0,0,0.394573622547734,0,0,0,1.48428957058962,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.844175070377856,0,0,0,1.75508317723178,0,0,1.00035336054936,0.455768223388005,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,0,0,0.404406797884062,1.60515529459758,0.468528891450678,0,0,0,0.394584402849391,2.41981432097328,0.30607276163049,0.126373159256976,0,0,0,0,0.627865836814451,0,0,0.693373365065693,0,0.0979923974143777,0,1.39781334593624,0.687944129886466,0,0,0,0.484945082442097,1.94163478721301,1.12990370390266,0.274083849293502,0,1.13959432720582,0,0.561111741760736,1.49417096317547,1.59847687665704,0,0,0,0,0,0,0,0.313808538937,0.713987523454252,1.73370353940911,0.600420288709789,0.410716136675979,0,6.0167161798794,0,0.558564802544508,0.458320848023367,0.717873024576814,0,0,0,0.739018197353989,0,0,0,0,0,1.47641222272123,0,0,0.544813624446302,2.57205037544031,1.2378549293751,0.415440338029185,0,0,1.15424157650247,0,0.394028536495991,0.157363764404994,0.105600336519406,0,0.959575986597226,0.714695326373367,0,0,0,0.864221491201268,0.326587360109409,0,0,0,0,0,0,0.775697738169303,0.66116300871345,1.53978154095896,0.704815022316672,0.213574825135389,0.78602152549833,0,0,0.197611631897944,0,0,0,0,0,0,0,0,1.09823638411767,2.3786276834235,0,0.332787154610557,0.248385611765534,0.276697269872462,0.624902039810533,0,0,2.11739237728355,0,0,0.74627401443437,0,0,0,0,0,0.228840068396924,0.453692771289717,0,0.147855149989634,0.318593534327405,0,0.310525913752519,1.65882483136342,1.06336685823198,1.04349012362347,1.35231848097497,0.761610424337591,0,0,1.39633724155235,0,0,1.20008329398946,0,0,0,0.770479321629213,2.57329909649911,0.782982875895635,2.04035332961045,0.231522474323834,0.244736704506468,0.179088841081487,0,1.09642024789354,0,0,1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| ||
|short_description=p3@KLHL4 | |||
}} | }} |
Latest revision as of 13:48, 16 September 2015
Short description: | p3@KLHL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KLHL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_019117, NM_057162, uc004efa.2, uc004efb.2_5end |
EntrezGene: | KLHL4 |
HGNC: | 6355 |
UniProt: | A5PKX1Q9C0H6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 2.63e-08 | 3 |
ciliated cell | 4.97e-08 | 3 |
ciliated epithelial cell | 4.97e-08 | 3 |
multi-ciliated epithelial cell | 4.97e-08 | 3 |
non-pigmented ciliary epithelial cell | 4.97e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 7.55e-13 | 11 |
pre-chordal neural plate | 1.65e-10 | 61 |
atypical epithelium | 2.40e-10 | 4 |
neocortex | 3.83e-10 | 20 |
central nervous system | 5.27e-10 | 81 |
pigment epithelium of eye | 9.07e-10 | 11 |
regional part of cerebral cortex | 4.70e-09 | 22 |
nervous system | 2.01e-08 | 89 |
microcirculatory vessel | 2.63e-08 | 3 |
endothelium of capillary | 2.63e-08 | 3 |
capillary | 2.63e-08 | 3 |
ciliary epithelium | 4.97e-08 | 3 |
ciliary body | 4.97e-08 | 3 |
cerebral cortex | 9.67e-08 | 25 |
pallium | 9.67e-08 | 25 |
brain vasculature | 1.06e-07 | 5 |
brain | 1.51e-07 | 68 |
future brain | 1.51e-07 | 68 |
anterior segment of eyeball | 2.05e-07 | 14 |
regional part of forebrain | 4.91e-07 | 41 |
forebrain | 4.91e-07 | 41 |
anterior neural tube | 4.91e-07 | 41 |
future forebrain | 4.91e-07 | 41 |
vasculature of eye | 7.55e-07 | 6 |
uvea | 7.55e-07 | 6 |
vasculature of head | 7.55e-07 | 6 |
cerebral hemisphere | 8.83e-07 | 32 |