FFCP PHASE1:Hg19::chrX:46940254..46940264,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9104 | |EntrezGene=9104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9989 | |HGNC=9989 | ||
|TSSclassifier=strong | |||
|UniProt=Q15493 | |UniProt=Q15493 | ||
|association_with_transcript=0bp_to_ENST00000336169_5end | |||
|cluster_id=chrX:46940254..46940264,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_6_at_RGN_5end | |||
|id=chrX:46940254..46940264,+ | |||
|ontology_enrichment_celltype=CL:0000181!8.07e-21!12;CL:0000417!8.07e-21!12;CL:0000668!8.07e-21!12;CL:0000414!8.07e-21!12;CL:0000412!8.07e-21!12;CL:0000182!8.07e-21!12;CL:0000223!3.26e-10!59;CL:0002563!5.84e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.02e-20;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.10e-20,12;CL:0000223,3.05e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.86e-13;11!UBERON:0009497;3.26e-11;13!CL:0000223;5.95e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!6.96e-23!19;UBERON:0006925!6.96e-23!19;UBERON:0008836!6.96e-23!19;UBERON:0008835!1.30e-19!22;UBERON:0003894!1.30e-19!22;UBERON:0009854!1.04e-18!23;UBERON:0007499!4.01e-17!25;UBERON:0009497!4.01e-17!25;UBERON:0000015!4.01e-17!25;UBERON:0002423!4.01e-17!25;UBERON:0006235!4.01e-17!25;UBERON:0004161!4.01e-17!25;UBERON:0005057!2.02e-16!26;UBERON:0009856!2.02e-16!26;UBERON:0003929!6.50e-14!54;UBERON:0002365!1.37e-13!31;UBERON:0002330!1.37e-13!31;UBERON:0002368!6.64e-12!35;UBERON:0000949!2.32e-11!45;UBERON:0005172!4.44e-11!55;UBERON:0005173!4.44e-11!55;UBERON:0004921!1.08e-10!129;UBERON:0004185!1.08e-10!129;UBERON:0005911!3.75e-10!82;UBERON:0002417!8.00e-10!61;UBERON:0000916!8.00e-10!61;UBERON:0004119!8.93e-10!169;UBERON:0000925!8.93e-10!169;UBERON:0006595!8.93e-10!169;UBERON:0000160!1.67e-08!27;UBERON:0001007!2.16e-08!155;UBERON:0001555!2.16e-08!155;UBERON:0007026!2.16e-08!155;UBERON:0002530!2.40e-08!59;UBERON:0001301!3.83e-08!1;UBERON:0002336!4.11e-08!1;UBERON:0001018!4.11e-08!1;UBERON:0002473!4.11e-08!1;UBERON:0005340!4.11e-08!1;UBERON:0002316!4.11e-08!1;UBERON:0003544!4.11e-08!1;UBERON:0001020!4.11e-08!1;UBERON:0005970!4.11e-08!1;UBERON:0002437!4.11e-08!1;UBERON:0001242!5.84e-08!4;UBERON:0001262!5.84e-08!4;UBERON:0004786!5.84e-08!4;UBERON:0004808!5.84e-08!4;UBERON:0001277!5.84e-08!4;UBERON:0005177!3.44e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.77e-29;19!UBERON:0006925;8.77e-29;19!UBERON:0002423;7.44e-22;25!UBERON:0002365;1.18e-17;31!UBERON:0002330;1.18e-17;31!UBERON:0002368;1.22e-14;33!UBERON:0000949;3.61e-11;43!UBERON:0002530;2.12e-08;57!UBERON:0000160;3.52e-08;17!UBERON:0001007;6.93e-08;81!UBERON:0005172;3.11e-07;52!UBERON:0005173;3.11e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.44e-29,19;UBERON:0006925,9.44e-29,19;UBERON:0008836,9.44e-29,19;UBERON:0008835,8.03e-25,22;UBERON:0003894,8.03e-25,22;UBERON:0009854,9.73e-24,23;UBERON:0007499,7.86e-22,25;UBERON:0009497,7.86e-22,25;UBERON:0000015,7.86e-22,25;UBERON:0002423,7.86e-22,25;UBERON:0006235,7.86e-22,25;UBERON:0004161,7.86e-22,25;UBERON:0009856,5.49e-21,26;UBERON:0002365,1.40e-17,31;UBERON:0002330,1.40e-17,31;UBERON:0003929,1.76e-17,54;UBERON:0002368,1.49e-15,35;UBERON:0002530,2.87e-12,59;UBERON:0000949,4.73e-12,45;UBERON:0004921,6.82e-12,118;UBERON:0005911,2.66e-11,82;UBERON:0005172,5.29e-10,54;UBERON:0005173,5.29e-10,54;UBERON:0001007,1.64e-09,145;UBERON:0001555,1.64e-09,145;UBERON:0007026,1.64e-09,145;UBERON:0002417,5.63e-09,60;UBERON:0000916,5.63e-09,60;UBERON:0004119,1.57e-08,160;UBERON:0000925,1.57e-08,160;UBERON:0006595,1.57e-08,160;UBERON:0000160,3.48e-08,17;UBERON:0011216,4.75e-07,223 | |||
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|short_description=p6@RGN | |||
}} | }} |
Latest revision as of 05:21, 25 September 2015
Short description: | p6@RGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RGN_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000336169_5end |
EntrezGene: | RGN |
HGNC: | 9989 |
UniProt: | Q15493 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.10e-20 | 12 |
endodermal cell | 3.05e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 9.44e-29 | 19 |
digestive gland | 9.44e-29 | 19 |
liver bud | 9.44e-29 | 19 |
hepatic diverticulum | 8.03e-25 | 22 |
liver primordium | 8.03e-25 | 22 |
digestive tract diverticulum | 9.73e-24 | 23 |
epithelial sac | 7.86e-22 | 25 |
epithelium of foregut-midgut junction | 7.86e-22 | 25 |
anatomical boundary | 7.86e-22 | 25 |
hepatobiliary system | 7.86e-22 | 25 |
foregut-midgut junction | 7.86e-22 | 25 |
septum transversum | 7.86e-22 | 25 |
sac | 5.49e-21 | 26 |
exocrine gland | 1.40e-17 | 31 |
exocrine system | 1.40e-17 | 31 |
gut epithelium | 1.76e-17 | 54 |
endocrine gland | 1.49e-15 | 35 |
gland | 2.87e-12 | 59 |
endocrine system | 4.73e-12 | 45 |
subdivision of digestive tract | 6.82e-12 | 118 |
endo-epithelium | 2.66e-11 | 82 |
abdomen element | 5.29e-10 | 54 |
abdominal segment element | 5.29e-10 | 54 |
digestive system | 1.64e-09 | 145 |
digestive tract | 1.64e-09 | 145 |
primitive gut | 1.64e-09 | 145 |
abdominal segment of trunk | 5.63e-09 | 60 |
abdomen | 5.63e-09 | 60 |
endoderm-derived structure | 1.57e-08 | 160 |
endoderm | 1.57e-08 | 160 |
presumptive endoderm | 1.57e-08 | 160 |
intestine | 3.48e-08 | 17 |
organ system subdivision | 4.75e-07 | 223 |