FFCP PHASE1:Hg19::chrX:13752708..13752757,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:13752708..13752757,- to FFCP PHASE1:Hg19::chrX:13752708..13752757,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6399 | |EntrezGene=6399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23068 | |HGNC=23068 | ||
|TSSclassifier=strong | |||
|UniProt=P0DI81,G1K394,E5RFG0,P0DI82,Q6IBE5 | |UniProt=P0DI81,G1K394,E5RFG0,P0DI82,Q6IBE5 | ||
|association_with_transcript=0bp_to_ENST00000358231,ENST00000359680,ENST00000419678,ENST00000453655,ENST00000518847,NM_001011658,NM_001128835,NM_014563,uc010nek.1,uc010nel.1,uc010nem.1_5end | |||
|cluster_id=chrX:13752708..13752757,- | |||
|description=CAGE_peak_2_at_TRAPPC2_5end | |||
|id=chrX:13752708..13752757,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.48e-23!57;UBERON:0005068!3.48e-23!57;UBERON:0006241!3.48e-23!57;UBERON:0007135!3.48e-23!57;UBERON:0007023!2.34e-22!115;UBERON:0002616!4.73e-20!59;UBERON:0003075!5.11e-20!86;UBERON:0007284!5.11e-20!86;UBERON:0002346!6.41e-20!90;UBERON:0003080!1.06e-19!42;UBERON:0002780!1.66e-19!41;UBERON:0001890!1.66e-19!41;UBERON:0006240!1.66e-19!41;UBERON:0003056!2.11e-17!61;UBERON:0000955!1.32e-16!69;UBERON:0006238!1.32e-16!69;UBERON:0001017!4.45e-16!82;UBERON:0005743!5.51e-16!86;UBERON:0001893!1.38e-15!34;UBERON:0002791!4.13e-15!33;UBERON:0001869!4.38e-15!32;UBERON:0002020!5.01e-15!34;UBERON:0003528!5.01e-15!34;UBERON:0000033!2.86e-14!123;UBERON:0000153!1.18e-13!129;UBERON:0007811!1.18e-13!129;UBERON:0002619!2.25e-13!22;UBERON:0000073!3.58e-13!94;UBERON:0001016!3.58e-13!94;UBERON:0001950!1.84e-12!20;UBERON:0000956!3.41e-12!25;UBERON:0000203!3.41e-12!25;UBERON:0000924!2.20e-10!173;UBERON:0006601!2.20e-10!173;UBERON:0004121!3.32e-10!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.71e-14;41!UBERON:0001890;4.71e-14;41!UBERON:0001869;1.50e-13;32!UBERON:0002619;1.70e-13;22!UBERON:0001893;2.00e-13;34!UBERON:0002791;3.34e-13;32!UBERON:0000073;4.17e-13;53!UBERON:0002616;4.17e-13;53!UBERON:0003528;5.97e-13;34!UBERON:0002020;5.97e-13;34!UBERON:0001950;1.48e-12;20!UBERON:0000956;4.47e-12;25!UBERON:0000203;4.47e-12;25!UBERON:0000955;6.18e-08;68!UBERON:0001017;4.03e-07;75!UBERON:0007023;7.66e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.74e-23,56;UBERON:0005068,5.74e-23,56;UBERON:0006241,5.74e-23,56;UBERON:0007135,5.74e-23,56;UBERON:0000073,2.43e-22,53;UBERON:0002616,2.43e-22,53;UBERON:0007023,7.67e-22,114;UBERON:0002780,1.66e-19,41;UBERON:0001890,1.66e-19,41;UBERON:0003080,1.66e-19,41;UBERON:0006240,1.66e-19,41;UBERON:0003075,3.27e-19,82;UBERON:0007284,3.27e-19,82;UBERON:0002346,4.15e-19,86;UBERON:0010371,7.17e-17,104;UBERON:0000955,2.28e-16,68;UBERON:0006238,2.28e-16,68;UBERON:0003056,3.68e-16,61;UBERON:0001017,7.66e-16,81;UBERON:0001893,1.38e-15,34;UBERON:0001869,4.38e-15,32;UBERON:0003528,5.01e-15,34;UBERON:0002020,5.01e-15,34;UBERON:0002791,1.08e-14,32;UBERON:0002619,2.25e-13,22;UBERON:0001016,6.06e-13,89;UBERON:0001950,1.84e-12,20;UBERON:0000956,3.41e-12,25;UBERON:0000203,3.41e-12,25;UBERON:0010314,6.48e-11,132;UBERON:0004121,1.29e-10,171;UBERON:0000924,1.29e-10,171;UBERON:0006601,1.29e-10,171 | |||
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| ||
|short_description=p2@TRAPPC2 | |||
}} | }} |
Latest revision as of 16:00, 19 September 2015
Short description: | p2@TRAPPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAPPC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000358231, ENST00000359680, ENST00000419678, ENST00000453655, ENST00000518847, NM_001011658, NM_001128835, NM_014563, uc010nek.1, uc010nel.1, uc010nem.1_5end |
EntrezGene: | TRAPPC2 |
HGNC: | 23068 |
UniProt: | P0DI81G1K394E5RFG0P0DI82Q6IBE5 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 5.74e-23 | 56 |
neural rod | 5.74e-23 | 56 |
future spinal cord | 5.74e-23 | 56 |
neural keel | 5.74e-23 | 56 |
regional part of nervous system | 2.43e-22 | 53 |
regional part of brain | 2.43e-22 | 53 |
adult organism | 7.67e-22 | 114 |
regional part of forebrain | 1.66e-19 | 41 |
forebrain | 1.66e-19 | 41 |
anterior neural tube | 1.66e-19 | 41 |
future forebrain | 1.66e-19 | 41 |
neural plate | 3.27e-19 | 82 |
presumptive neural plate | 3.27e-19 | 82 |
neurectoderm | 4.15e-19 | 86 |
ecto-epithelium | 7.17e-17 | 104 |
brain | 2.28e-16 | 68 |
future brain | 2.28e-16 | 68 |
pre-chordal neural plate | 3.68e-16 | 61 |
central nervous system | 7.66e-16 | 81 |
telencephalon | 1.38e-15 | 34 |
cerebral hemisphere | 4.38e-15 | 32 |
brain grey matter | 5.01e-15 | 34 |
gray matter | 5.01e-15 | 34 |
regional part of telencephalon | 1.08e-14 | 32 |
regional part of cerebral cortex | 2.25e-13 | 22 |
nervous system | 6.06e-13 | 89 |
neocortex | 1.84e-12 | 20 |
cerebral cortex | 3.41e-12 | 25 |
pallium | 3.41e-12 | 25 |
structure with developmental contribution from neural crest | 6.48e-11 | 132 |
ectoderm-derived structure | 1.29e-10 | 171 |
ectoderm | 1.29e-10 | 171 |
presumptive ectoderm | 1.29e-10 | 171 |