FFCP PHASE1:Hg19::chr8:27630102..27630172,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:27630102..27630172,- to FFCP PHASE1:Hg19::chr8:27630102..27630172,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55246 | |EntrezGene=55246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25591 | |HGNC=25591 | ||
|TSSclassifier=strong | |||
|UniProt=Q86WR0,E5RI21,B7Z2L8,Q0VGD4,Q0P663,G3V121 | |UniProt=Q86WR0,E5RI21,B7Z2L8,Q0VGD4,Q0P663,G3V121 | ||
|association_with_transcript=0bp_to_ENST00000356537,ENST00000517979,ENST00000519509,ENST00000520202,ENST00000520486,ENST00000522915,ENST00000523841,ENST00000524084,ENST00000539095,NM_018246,uc003xgc.2,uc003xgd.2,uc003xge.2,uc003xgf.1,uc011lan.1,uc011lao.1_5end | |||
|cluster_id=chr8:27630102..27630172,- | |||
|description=CAGE_peak_1_at_CCDC25_5end | |||
|id=chr8:27630102..27630172,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.09e-13!94;UBERON:0001016!1.09e-13!94;UBERON:0001017!1.56e-12!82;UBERON:0005743!1.77e-12!86;UBERON:0000033!4.18e-12!123;UBERON:0001049!5.18e-12!57;UBERON:0005068!5.18e-12!57;UBERON:0006241!5.18e-12!57;UBERON:0007135!5.18e-12!57;UBERON:0002780!1.41e-11!41;UBERON:0001890!1.41e-11!41;UBERON:0006240!1.41e-11!41;UBERON:0000924!1.54e-11!173;UBERON:0006601!1.54e-11!173;UBERON:0000955!1.63e-11!69;UBERON:0006238!1.63e-11!69;UBERON:0004121!2.59e-11!169;UBERON:0000153!2.60e-11!129;UBERON:0007811!2.60e-11!129;UBERON:0002346!3.53e-11!90;UBERON:0003080!4.56e-11!42;UBERON:0003075!4.85e-11!86;UBERON:0007284!4.85e-11!86;UBERON:0002616!1.79e-10!59;UBERON:0002020!3.52e-10!34;UBERON:0003528!3.52e-10!34;UBERON:0001893!5.57e-10!34;UBERON:0002791!1.87e-09!33;UBERON:0001869!2.31e-09!32;UBERON:0003056!5.51e-09!61;UBERON:0007023!3.70e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;9.56e-09;34!UBERON:0003528;9.56e-09;34!UBERON:0002020;9.56e-09;34!UBERON:0002791;1.36e-08;32!UBERON:0001869;1.41e-08;32!UBERON:0002780;2.17e-08;41!UBERON:0001890;2.17e-08;41!UBERON:0000073;2.43e-07;53!UBERON:0002616;2.43e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.39e-14,89;UBERON:0001017,7.02e-13,81;UBERON:0001049,1.90e-12,56;UBERON:0005068,1.90e-12,56;UBERON:0006241,1.90e-12,56;UBERON:0007135,1.90e-12,56;UBERON:0000073,6.61e-12,53;UBERON:0002616,6.61e-12,53;UBERON:0000955,7.04e-12,68;UBERON:0006238,7.04e-12,68;UBERON:0002780,1.41e-11,41;UBERON:0001890,1.41e-11,41;UBERON:0003080,1.41e-11,41;UBERON:0006240,1.41e-11,41;UBERON:0004121,2.83e-11,171;UBERON:0000924,2.83e-11,171;UBERON:0006601,2.83e-11,171;UBERON:0010314,4.30e-11,132;UBERON:0002346,1.78e-10,86;UBERON:0003075,2.45e-10,82;UBERON:0007284,2.45e-10,82;UBERON:0003528,3.52e-10,34;UBERON:0002020,3.52e-10,34;UBERON:0001893,5.57e-10,34;UBERON:0011216,6.73e-10,223;UBERON:0003056,1.52e-09,61;UBERON:0001869,2.31e-09,32;UBERON:0002791,2.63e-09,32;UBERON:0010371,1.15e-08,104;UBERON:0007023,7.61e-07,114 | |||
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| ||
|short_description=p1@CCDC25 | |||
}} | }} |
Latest revision as of 20:04, 17 September 2015
Short description: | p1@CCDC25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC25_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000356537, ENST00000517979, ENST00000519509, ENST00000520202, ENST00000520486, ENST00000522915, ENST00000523841, ENST00000524084, ENST00000539095, NM_018246, uc003xgc.2, uc003xgd.2, uc003xge.2, uc003xgf.1, uc011lan.1, uc011lao.1_5end |
EntrezGene: | CCDC25 |
HGNC: | 25591 |
UniProt: | Q86WR0E5RI21B7Z2L8Q0VGD4Q0P663G3V121 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 4.39e-14 | 89 |
central nervous system | 7.02e-13 | 81 |
neural tube | 1.90e-12 | 56 |
neural rod | 1.90e-12 | 56 |
future spinal cord | 1.90e-12 | 56 |
neural keel | 1.90e-12 | 56 |
regional part of nervous system | 6.61e-12 | 53 |
regional part of brain | 6.61e-12 | 53 |
brain | 7.04e-12 | 68 |
future brain | 7.04e-12 | 68 |
regional part of forebrain | 1.41e-11 | 41 |
forebrain | 1.41e-11 | 41 |
anterior neural tube | 1.41e-11 | 41 |
future forebrain | 1.41e-11 | 41 |
ectoderm-derived structure | 2.83e-11 | 171 |
ectoderm | 2.83e-11 | 171 |
presumptive ectoderm | 2.83e-11 | 171 |
structure with developmental contribution from neural crest | 4.30e-11 | 132 |
neurectoderm | 1.78e-10 | 86 |
neural plate | 2.45e-10 | 82 |
presumptive neural plate | 2.45e-10 | 82 |
brain grey matter | 3.52e-10 | 34 |
gray matter | 3.52e-10 | 34 |
telencephalon | 5.57e-10 | 34 |
organ system subdivision | 6.73e-10 | 223 |
pre-chordal neural plate | 1.52e-09 | 61 |
cerebral hemisphere | 2.31e-09 | 32 |
regional part of telencephalon | 2.63e-09 | 32 |
ecto-epithelium | 1.15e-08 | 104 |
adult organism | 7.61e-07 | 114 |