FFCP PHASE1:Hg19::chr7:72569000..72569055,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:72569000..72569055,+ to FFCP PHASE1:Hg19::chr7:72569000..72569055,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2970,100093631 | |EntrezGene=2970,100093631 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=4660 | |HGNC=4660 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000544802,NR_002206,NR_003580,uc003txo.3,uc011keq.1_5end | |||
|cluster_id=chr7:72569000..72569055,+ | |||
|coexpression_cluster_id=C1019 | |||
|description=CAGE_peak_1_at_GTF2IP1_5end | |||
|id=chr7:72569000..72569055,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.79e-17!42;CL:0000860!6.23e-15!45;CL:0000766!2.60e-11!76;CL:0000839!1.99e-10!70;CL:0000557!2.58e-10!71;CL:0000763!2.31e-09!112;CL:0000049!2.31e-09!112;CL:0002009!3.58e-09!65;CL:0000738!8.82e-09!140;CL:0002194!1.15e-08!63;CL:0000576!1.15e-08!63;CL:0000040!1.15e-08!63;CL:0000559!1.15e-08!63;CL:0002031!2.43e-07!124;CL:0000037!2.53e-07!172;CL:0000566!2.53e-07!172;CL:0002032!2.73e-07!165;CL:0000837!2.73e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.16e-23;33!CL:0002057;2.16e-23;33!CL:0000473;2.98e-19;39!CL:0000234;2.98e-19;39!CL:0000576;3.05e-14;48!CL:0000766;5.42e-12;69!CL:0000763;6.06e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.30e-27,42;CL:0002057,2.30e-27,42;CL:0000473,4.20e-27,48;CL:0000234,4.20e-27,48;CL:0000766,1.92e-23,72;CL:0000839,1.82e-22,66;CL:0000557,3.46e-22,67;CL:0000763,1.70e-21,108;CL:0000049,1.70e-21,108;CL:0002009,8.74e-20,61;CL:0002194,7.47e-19,59;CL:0000576,7.47e-19,59;CL:0000040,7.47e-19,59;CL:0000559,7.47e-19,59;CL:0000738,1.11e-16,136;CL:0000037,9.76e-16,168;CL:0002032,1.69e-15,161;CL:0000837,1.69e-15,161;CL:0002031,1.39e-14,120;CL:0000988,7.74e-14,177;CL:0002087,2.64e-10,115 | |||
|ontology_enrichment_development_v019=CL:0002057;8.57e-20;42!CL:0000049;9.40e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.42e-12!57;UBERON:0005068!1.42e-12!57;UBERON:0006241!1.42e-12!57;UBERON:0007135!1.42e-12!57;UBERON:0001017!1.62e-11!82;UBERON:0002780!8.67e-11!41;UBERON:0001890!8.67e-11!41;UBERON:0006240!8.67e-11!41;UBERON:0002616!2.23e-10!59;UBERON:0005743!3.46e-10!86;UBERON:0003080!3.72e-10!42;UBERON:0002020!8.83e-10!34;UBERON:0003528!8.83e-10!34;UBERON:0000955!8.96e-10!69;UBERON:0006238!8.96e-10!69;UBERON:0001893!2.81e-09!34;UBERON:0002791!3.86e-09!33;UBERON:0002371!4.62e-09!80;UBERON:0001869!5.08e-09!32;UBERON:0000073!8.73e-09!94;UBERON:0001016!8.73e-09!94;UBERON:0001474!2.64e-08!86;UBERON:0002619!1.11e-07!22;UBERON:0004765!1.14e-07!101;UBERON:0001434!1.14e-07!101;UBERON:0003075!2.34e-07!86;UBERON:0007284!2.34e-07!86;UBERON:0007023!4.32e-07!115;UBERON:0000956!5.72e-07!25;UBERON:0000203!5.72e-07!25;UBERON:0001950!7.71e-07!20;UBERON:0002346!7.75e-07!90;UBERON:0002390!8.21e-07!102;UBERON:0003061!8.21e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.10e-07;9!UBERON:0001557;2.10e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.15e-20,76;UBERON:0001474,2.39e-17,82;UBERON:0004765,2.24e-16,90;UBERON:0002405,6.77e-16,93;UBERON:0002390,1.92e-13,98;UBERON:0003061,1.92e-13,98;UBERON:0001434,3.22e-13,100;UBERON:0002193,3.47e-12,108;UBERON:0002204,1.63e-07,167;UBERON:0001737,2.28e-07,9 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0.436882744260345,0,0.123766352960047,0.331397375727916,20.1697543935533,17.4781413126953,11.684961446198,17.5655807564582,0.369363174230364,0.408001382488506,0,0.85870796139317,0,0.125542639594803,0,0,0,3.93364276848904,1.15148819429164,10.3726802621771,0,0,0,0,0,2.34880351467878,0,0,0.434021741431704,0,0,0,11.9226555799243,10.9584023669755,13.5847074265177,5.11343881192506,5.34518254428373,4.95530193432166,4.60307827715441,6.40401766322752,4.25668013799453,6.89491361473237,7.74581620300591,5.41705946377367,8.094420600332,4.91231070104122,4.49446968890169,4.28517449319264,3.85114832491312,4.47535988059329,7.91643120448119,4.9865914405408,7.2458207590558,3.77272010217159,4.53908179752912,2.4912889959823,7.28621129244555,5.73631210262222,4.77815458351257,4.23779651843358,4.78760926783834,2.84816148696796,7.6051903072299,8.07896339867165,7.33805259279316,10.446562696624,14.8675123913091,19.6085215770438,2.28010194992999,5.76858363877361,7.67189445811463,0,1.63841583378639,0,1.70692089026603,0.400395987036012,4.02326707968138,0.661044872784862,0.954053754535364,0,0,0.382273228125229,11.8954195721123,10.0891541336676,6.58460211937693,0.393419540227666,0,0,11.2014951911754,1.95553359980154,1.4203434172042,3.89653456815823,10.5839934040915,8.54357131677028,9.74749136167933,8.6657236404805,6.66074862573511,7.28332346335318,4.1109476150919,4.97430032014527,10.7227141721969,3.85545064221357,8.82884732696053,4.18142095219907,8.3848913596199,3.06576394881537,1.37450978193052,7.59059076058509,3.82278497188916,4.55758417699493,1.90090408889675,4.66782869141096,3.58362511232371,1.24930726552346,3.07810427657222,0.821127996921047,0.201606743224732,0,0,0,0,8.438929081673,0,0,0.144846518960824,0,0,0.283604451492204,0.443458794925128,0.43917392846563,0.261958150995425,0,0,0,0,0,0,2.28797964312051,4.08603251462521,0.198762407366705,0,0.347140501607594,1.13061588384802,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0,21.0848667897701,11.6334079244498,0,0.496971951695318,0.12663051166458,5.82600395578163,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0.161872944368132,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0,0.300476117813194,0,0,0.213557388818567,0.211931901159562,0,0,0,0,6.75105328965065,0.194874010322397,0.252433774244115,0.0920498986422993,23.6003242955465,0,0.10075209822764,0,0,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,17.662459561294,20.4387321082465,0,0,0,0,0,4.25904480143438,7.75489574359268,5.78426471720357,3.74999507290139,3.05031221729369,4.74541238222193,3.50561401216427,6.08286541888573,5.38646019724947,0,0,0,1.47008711385542,0,0,0,0,0.614942192715568,5.31860211925429,0.329250856225877,0,0,0.277765335475589,0,0,0,13.2160661671588,10.4493737869881,0,1.38895653772983,8.18092854608773,0.790204397959275,0,0,0,0.148631162288728,0,7.0552493843521,9.64070661248228,0.0895585227028483,0,0,0,9.24508557138873,3.31724984865235,2.88239906833923,2.90357596880674,8.25472625798198,0,0,1.71072446022705,0,5.1058319833466,14.2913216315289,0,0,0.07333828582095,0,3.57656445851882,4.22651376278,0,0,0.514414748524284,0,0,0.714889968290738,0,0,0,0.355391948742546,0,0.301439377059586,4.35766729300147,0.399891964728228,8.51366464488333,13.0586843772353,4.21667878966063,0.239624855491583,0,12.8373214536647,0.144781306667579,0,0,0.112085143993527,0,0,0.128343036279748,1.01637849688985,0,0,0.670065061337395,20.4140400529012,0.749007023947182,0,1.24324654030811,0.12269149171914,0,0,11.6463682457252,6.78030157429215,9.93525214713788,12.8855556491985,0,0,0,0,0.737476674166813,0.173767228936166,0,0.343143423810856,0,0.431428401637234,0,0,0,0,0.496215615637554,10.8958001034524,0,0.512556597022804,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0.519254429183621,0.116210378459959,0.120859449591622,0,0.0920809889358963,0,0.182091168006717,0.655622074797121,0.451199612907412,0.231046011313244,0.784349769176855,1.46139224653261,0.211103257785751,0,0,0.215915916102139,1.54227252690289,0.270946437543853,0,0,0,0,25.4341456909284,24.0520614942908,0,0,0,0.103041011647722,0.27470839445503,0.082509499920588,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0,0,0,0.145016693914229,0,0.0890320356467374,0,0,5.99779748724545,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0.318203247925937,0,0.359744915166629,0,0.353437207037059,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,11.1502107847928,0,0,0.281695602532241,6.16668814477421,5.89494246078727,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0.569647187174163,0.238231775457789,0.822724546172388,0,0,1.58625035258854,0,0,0,0.371606350251437,0,0.213425530045242,0.159426272728822,0.199579371432817,4.5961288831768,0.423347165447766,6.16781686521655,0,0,0,2.50634477090067,13.3740504463267,0.1605880751037,0,0,0,0,0,0,0,0,0,15.4159736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| ||
|short_description=p1@GTF2IP1 | |||
}} | }} |
Latest revision as of 09:22, 19 September 2015
Short description: | p1@GTF2IP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GTF2IP1_5end |
Coexpression cluster: | C1019_occipital_medial_amygdala_caudate_hippocampus_cerebellum_parietal |
Association with transcript: | 0bp_to_ENST00000544802, NR_002206, NR_003580, uc003txo.3, uc011keq.1_5end |
EntrezGene: | 2970,100093631 |
HGNC: | 4660 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.30e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.30e-27 | 42 |
defensive cell | 4.20e-27 | 48 |
phagocyte | 4.20e-27 | 48 |
myeloid leukocyte | 1.92e-23 | 72 |
myeloid lineage restricted progenitor cell | 1.82e-22 | 66 |
granulocyte monocyte progenitor cell | 3.46e-22 | 67 |
myeloid cell | 1.70e-21 | 108 |
common myeloid progenitor | 1.70e-21 | 108 |
macrophage dendritic cell progenitor | 8.74e-20 | 61 |
monopoietic cell | 7.47e-19 | 59 |
monocyte | 7.47e-19 | 59 |
monoblast | 7.47e-19 | 59 |
promonocyte | 7.47e-19 | 59 |
leukocyte | 1.11e-16 | 136 |
hematopoietic stem cell | 9.76e-16 | 168 |
hematopoietic oligopotent progenitor cell | 1.69e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.69e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 1.39e-14 | 120 |
hematopoietic cell | 7.74e-14 | 177 |
nongranular leukocyte | 2.64e-10 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.15e-20 | 76 |
bone element | 2.39e-17 | 82 |
skeletal element | 2.24e-16 | 90 |
immune system | 6.77e-16 | 93 |
hematopoietic system | 1.92e-13 | 98 |
blood island | 1.92e-13 | 98 |
skeletal system | 3.22e-13 | 100 |
hemolymphoid system | 3.47e-12 | 108 |
musculoskeletal system | 1.63e-07 | 167 |
larynx | 2.28e-07 | 9 |