FFCP PHASE1:Hg19::chr7:38948780..38948805,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:38948780..38948805,- to FFCP PHASE1:Hg19::chr7:38948780..38948805,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27072 | |EntrezGene=27072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12713 | |HGNC=12713 | ||
|TSSclassifier=strong | |||
|UniProt=C9J3F8,P49754,E9PF36 | |UniProt=C9J3F8,P49754,E9PF36 | ||
|association_with_transcript=0bp_to_ENST00000265745,ENST00000414632,NM_014396,NM_080631,uc003tgy.2,uc003tgz.2,uc010kxn.2_5end | |||
|cluster_id=chr7:38948780..38948805,- | |||
|description=CAGE_peak_1_at_VPS41_5end | |||
|id=chr7:38948780..38948805,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!1.74e-15!41;UBERON:0001890!1.74e-15!41;UBERON:0006240!1.74e-15!41;UBERON:0003080!1.64e-14!42;UBERON:0001049!2.42e-14!57;UBERON:0005068!2.42e-14!57;UBERON:0006241!2.42e-14!57;UBERON:0007135!2.42e-14!57;UBERON:0002616!5.97e-14!59;UBERON:0005743!7.14e-14!86;UBERON:0000955!2.22e-13!69;UBERON:0006238!2.22e-13!69;UBERON:0000073!3.41e-13!94;UBERON:0001016!3.41e-13!94;UBERON:0001017!5.67e-13!82;UBERON:0001893!1.17e-12!34;UBERON:0002020!1.90e-12!34;UBERON:0003528!1.90e-12!34;UBERON:0007023!4.38e-12!115;UBERON:0002791!4.46e-12!33;UBERON:0001869!4.71e-12!32;UBERON:0002619!6.87e-11!22;UBERON:0002346!4.05e-10!90;UBERON:0001950!5.39e-10!20;UBERON:0003056!5.71e-10!61;UBERON:0003075!1.75e-09!86;UBERON:0007284!1.75e-09!86;UBERON:0000956!1.92e-09!25;UBERON:0000203!1.92e-09!25;UBERON:0000033!4.28e-09!123;UBERON:0000153!2.12e-08!129;UBERON:0007811!2.12e-08!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;4.16e-11;34!UBERON:0002780;4.18e-11;41!UBERON:0001890;4.18e-11;41!UBERON:0002619;6.32e-11;22!UBERON:0003528;8.94e-11;34!UBERON:0002020;8.94e-11;34!UBERON:0001869;9.15e-11;32!UBERON:0002791;1.51e-10;32!UBERON:0001950;5.08e-10;20!UBERON:0000956;1.74e-09;25!UBERON:0000203;1.74e-09;25!UBERON:0000073;2.47e-09;53!UBERON:0002616;2.47e-09;53!UBERON:0001017;3.04e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,1.74e-15,41;UBERON:0001890,1.74e-15,41;UBERON:0003080,1.74e-15,41;UBERON:0006240,1.74e-15,41;UBERON:0001049,3.89e-15,56;UBERON:0005068,3.89e-15,56;UBERON:0006241,3.89e-15,56;UBERON:0007135,3.89e-15,56;UBERON:0000073,1.63e-14,53;UBERON:0002616,1.63e-14,53;UBERON:0000955,4.78e-14,68;UBERON:0006238,4.78e-14,68;UBERON:0001017,1.46e-13,81;UBERON:0001016,7.55e-13,89;UBERON:0001893,1.17e-12,34;UBERON:0003528,1.90e-12,34;UBERON:0002020,1.90e-12,34;UBERON:0001869,4.71e-12,32;UBERON:0002791,9.23e-12,32;UBERON:0007023,1.08e-11,114;UBERON:0002619,6.87e-11,22;UBERON:0003056,1.15e-10,61;UBERON:0002346,2.54e-10,86;UBERON:0001950,5.39e-10,20;UBERON:0003075,1.11e-09,82;UBERON:0007284,1.11e-09,82;UBERON:0000956,1.92e-09,25;UBERON:0000203,1.92e-09,25 | |||
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|short_description=p1@VPS41 | |||
}} | }} |
Latest revision as of 13:05, 18 September 2015
Short description: | p1@VPS41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS41_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265745, ENST00000414632, NM_014396, NM_080631, uc003tgy.2, uc003tgz.2, uc010kxn.2_5end |
EntrezGene: | VPS41 |
HGNC: | 12713 |
UniProt: | C9J3F8P49754E9PF36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 1.74e-15 | 41 |
forebrain | 1.74e-15 | 41 |
anterior neural tube | 1.74e-15 | 41 |
future forebrain | 1.74e-15 | 41 |
neural tube | 3.89e-15 | 56 |
neural rod | 3.89e-15 | 56 |
future spinal cord | 3.89e-15 | 56 |
neural keel | 3.89e-15 | 56 |
regional part of nervous system | 1.63e-14 | 53 |
regional part of brain | 1.63e-14 | 53 |
brain | 4.78e-14 | 68 |
future brain | 4.78e-14 | 68 |
central nervous system | 1.46e-13 | 81 |
nervous system | 7.55e-13 | 89 |
telencephalon | 1.17e-12 | 34 |
brain grey matter | 1.90e-12 | 34 |
gray matter | 1.90e-12 | 34 |
cerebral hemisphere | 4.71e-12 | 32 |
regional part of telencephalon | 9.23e-12 | 32 |
adult organism | 1.08e-11 | 114 |
regional part of cerebral cortex | 6.87e-11 | 22 |
pre-chordal neural plate | 1.15e-10 | 61 |
neurectoderm | 2.54e-10 | 86 |
neocortex | 5.39e-10 | 20 |
neural plate | 1.11e-09 | 82 |
presumptive neural plate | 1.11e-09 | 82 |
cerebral cortex | 1.92e-09 | 25 |
pallium | 1.92e-09 | 25 |