FFCP PHASE1:Hg19::chr7:29234847..29234895,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:29234847..29234895,- to FFCP PHASE1:Hg19::chr7:29234847..29234895,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54504 | |EntrezGene=54504 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14399 | |HGNC=14399 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H3G5 | |UniProt=Q9H3G5 | ||
|association_with_transcript=0bp_to_ENST00000409850,ENST00000488891,uc003szx.2_5end | |||
|cluster_id=chr7:29234847..29234895,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_4_at_CPVL_5end | |||
|id=chr7:29234847..29234895,- | |||
|ontology_enrichment_celltype=CL:0002057!1.35e-15!42;CL:0000860!5.37e-14!45;CL:0000839!2.74e-10!70;CL:0000766!1.05e-09!76;CL:0000557!3.15e-09!71;CL:0002393!9.92e-09!9;CL:0002397!9.92e-09!9;CL:0000738!1.53e-08!140;CL:0002031!5.86e-08!124;CL:0002194!1.44e-07!63;CL:0000576!1.44e-07!63;CL:0000040!1.44e-07!63;CL:0000559!1.44e-07!63;CL:0000037!2.57e-07!172;CL:0000566!2.57e-07!172;CL:0002087!3.02e-07!119;CL:0002009!3.97e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000097;9.34e-18;5!CL:0000163;4.05e-10;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,5.91e-18,5;CL:0002028,5.91e-18,5;CL:0000163,3.16e-10,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.81e-30;3!UBERON:0005425;9.04e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.33e-24!115;UBERON:0001049!2.26e-23!57;UBERON:0005068!2.26e-23!57;UBERON:0006241!2.26e-23!57;UBERON:0007135!2.26e-23!57;UBERON:0002616!3.64e-19!59;UBERON:0001017!8.49e-19!82;UBERON:0000073!3.05e-18!94;UBERON:0001016!3.05e-18!94;UBERON:0005743!3.45e-18!86;UBERON:0000955!3.65e-18!69;UBERON:0006238!3.65e-18!69;UBERON:0002780!5.88e-17!41;UBERON:0001890!5.88e-17!41;UBERON:0006240!5.88e-17!41;UBERON:0003080!2.35e-16!42;UBERON:0002346!1.04e-15!90;UBERON:0001893!8.37e-15!34;UBERON:0002020!8.83e-15!34;UBERON:0003528!8.83e-15!34;UBERON:0003075!4.07e-14!86;UBERON:0007284!4.07e-14!86;UBERON:0002791!5.10e-14!33;UBERON:0001950!8.52e-13!20;UBERON:0001869!9.50e-13!32;UBERON:0002619!2.88e-11!22;UBERON:0003056!1.57e-09!61;UBERON:0000956!1.97e-09!25;UBERON:0000203!1.97e-09!25;UBERON:0001474!1.11e-08!86;UBERON:0003076!2.64e-08!15;UBERON:0003057!2.64e-08!15;UBERON:0004732!3.64e-08!13;UBERON:0002371!5.86e-08!80;UBERON:0002308!3.12e-07!9;UBERON:0000125!3.12e-07!9;UBERON:0004733!5.32e-07!12;UBERON:0002028!5.32e-07!12;UBERON:0007277!5.32e-07!12;UBERON:0001872!6.60e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;1.48e-18;13!UBERON:0002037;1.84e-15;6!UBERON:0004733;2.81e-13;12!UBERON:0002028;2.81e-13;12!UBERON:0000941;9.04e-11;1!UBERON:0001785;9.04e-11;1!UBERON:0002464;9.04e-11;1!UBERON:0004904;9.04e-11;1!UBERON:0001021;9.04e-11;1!UBERON:0002680;1.73e-10;9!UBERON:0001895;1.73e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004732,1.11e-18,13;UBERON:0002037,1.84e-15,6;UBERON:0006215,1.84e-15,6;UBERON:0004733,2.33e-13,12;UBERON:0002028,2.33e-13,12;UBERON:0007277,2.33e-13,12;UBERON:0000941,7.46e-11,1;UBERON:0001785,7.46e-11,1;UBERON:0002464,7.46e-11,1;UBERON:0004904,7.46e-11,1;UBERON:0001021,7.46e-11,1;UBERON:0003902,7.46e-11,1;UBERON:0005425,7.46e-11,1;UBERON:0003076,1.00e-10,15;UBERON:0003057,1.00e-10,15;UBERON:0002680,1.73e-10,9;UBERON:0001895,1.73e-10,9;UBERON:0010092,1.73e-10,9;UBERON:0000073,4.86e-08,53;UBERON:0002616,4.86e-08,53;UBERON:0000955,7.79e-08,68;UBERON:0006238,7.79e-08,68;UBERON:0001049,1.41e-07,56;UBERON:0005068,1.41e-07,56;UBERON:0006241,1.41e-07,56;UBERON:0007135,1.41e-07,56;UBERON:0001016,3.10e-07,89 | |||
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| ||
|short_description=p4@CPVL | |||
}} | }} |
Latest revision as of 04:07, 18 September 2015
Short description: | p4@CPVL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CPVL_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 0bp_to_ENST00000409850, ENST00000488891, uc003szx.2_5end |
EntrezGene: | CPVL |
HGNC: | 14399 |
UniProt: | Q9H3G5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 5.91e-18 | 5 |
basophil mast progenitor cell | 5.91e-18 | 5 |
endocrine cell | 3.16e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
segmental subdivision of nervous system | 1.11e-18 | 13 |
cerebellum | 1.84e-15 | 6 |
rhombic lip | 1.84e-15 | 6 |
segmental subdivision of hindbrain | 2.33e-13 | 12 |
hindbrain | 2.33e-13 | 12 |
presumptive hindbrain | 2.33e-13 | 12 |
cranial nerve II | 7.46e-11 | 1 |
cranial nerve | 7.46e-11 | 1 |
nerve trunk | 7.46e-11 | 1 |
nerve connecting eye with brain | 7.46e-11 | 1 |
nerve | 7.46e-11 | 1 |
retinal neural layer | 7.46e-11 | 1 |
presumptive neural retina | 7.46e-11 | 1 |
posterior neural tube | 1.00e-10 | 15 |
chordal neural plate | 1.00e-10 | 15 |
regional part of metencephalon | 1.73e-10 | 9 |
metencephalon | 1.73e-10 | 9 |
future metencephalon | 1.73e-10 | 9 |
regional part of nervous system | 4.86e-08 | 53 |
regional part of brain | 4.86e-08 | 53 |
brain | 7.79e-08 | 68 |
future brain | 7.79e-08 | 68 |
neural tube | 1.41e-07 | 56 |
neural rod | 1.41e-07 | 56 |
future spinal cord | 1.41e-07 | 56 |
neural keel | 1.41e-07 | 56 |
nervous system | 3.10e-07 | 89 |