FFCP PHASE1:Hg19::chr6:53409831..53409845,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:53409831..53409845,- to FFCP PHASE1:Hg19::chr6:53409831..53409845,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2729 | |EntrezGene=2729 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4311 | |HGNC=4311 | ||
|TSSclassifier=strong | |||
|UniProt=P48506 | |UniProt=P48506 | ||
|association_with_transcript=0bp_to_ENST00000514004,uc003pbw.1,uc003pbx.2_5end | |||
|cluster_id=chr6:53409831..53409845,- | |||
|description=CAGE_peak_3_at_GCLC_5end | |||
|id=chr6:53409831..53409845,- | |||
|ontology_enrichment_celltype=CL:0000037!5.66e-07!172;CL:0000566!5.66e-07!172;CL:0002031!6.05e-07!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.16e-07,168;CL:0002031,2.96e-07,120;CL:0000988,7.90e-07,177;CL:0002087,9.65e-07,115 | |||
|ontology_enrichment_development_v019=UBERON:0006601;7.91e-07;82 | |||
|ontology_enrichment_disease=DOID:305!2.54e-09!106;DOID:0050687!5.30e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.29e-09,106;DOID:0050687,7.87e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.26e-16!115;UBERON:0001049!3.33e-12!57;UBERON:0005068!3.33e-12!57;UBERON:0006241!3.33e-12!57;UBERON:0007135!3.33e-12!57;UBERON:0002780!5.45e-12!41;UBERON:0001890!5.45e-12!41;UBERON:0006240!5.45e-12!41;UBERON:0003080!1.57e-11!42;UBERON:0001893!2.94e-11!34;UBERON:0002020!5.74e-11!34;UBERON:0003528!5.74e-11!34;UBERON:0002791!9.69e-11!33;UBERON:0001869!4.27e-10!32;UBERON:0000955!8.66e-10!69;UBERON:0006238!8.66e-10!69;UBERON:0002616!1.39e-09!59;UBERON:0000073!2.22e-09!94;UBERON:0001016!2.22e-09!94;UBERON:0005743!4.51e-09!86;UBERON:0001017!8.19e-09!82;UBERON:0002619!9.79e-08!22;UBERON:0000956!4.55e-07!25;UBERON:0000203!4.55e-07!25;UBERON:0001950!5.83e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;8.11e-10;34!UBERON:0003528;1.49e-09;34!UBERON:0002020;1.49e-09;34!UBERON:0002791;2.88e-09;32!UBERON:0001869;3.54e-09;32!UBERON:0002780;6.87e-09;41!UBERON:0001890;6.87e-09;41!UBERON:0002619;8.85e-08;22!UBERON:0000073;1.84e-07;53!UBERON:0002616;1.84e-07;53!UBERON:0000956;4.32e-07;25!UBERON:0000203;4.32e-07;25!UBERON:0001950;4.55e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.00e-15,114;UBERON:0001049,9.84e-13,56;UBERON:0005068,9.84e-13,56;UBERON:0006241,9.84e-13,56;UBERON:0007135,9.84e-13,56;UBERON:0000073,3.66e-12,53;UBERON:0002616,3.66e-12,53;UBERON:0002780,4.16e-12,41;UBERON:0001890,4.16e-12,41;UBERON:0003080,4.16e-12,41;UBERON:0006240,4.16e-12,41;UBERON:0001893,2.29e-11,34;UBERON:0003528,4.50e-11,34;UBERON:0002020,4.50e-11,34;UBERON:0000955,2.39e-10,68;UBERON:0006238,2.39e-10,68;UBERON:0002791,2.91e-10,32;UBERON:0001869,3.42e-10,32;UBERON:0001016,1.97e-09,89;UBERON:0001017,2.42e-09,81;UBERON:0002619,8.34e-08,22;UBERON:0011216,2.47e-07,223;UBERON:0000956,3.94e-07,25;UBERON:0000203,3.94e-07,25;UBERON:0003056,4.22e-07,61;UBERON:0003075,4.74e-07,82;UBERON:0007284,4.74e-07,82;UBERON:0001950,5.07e-07,20 | |||
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| ||
|short_description=p3@GCLC | |||
}} | }} |
Latest revision as of 07:23, 19 September 2015
Short description: | p3@GCLC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GCLC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000514004, uc003pbw.1, uc003pbx.2_5end |
EntrezGene: | GCLC |
HGNC: | 4311 |
UniProt: | P48506 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.16e-07 | 168 |
hematopoietic lineage restricted progenitor cell | 2.96e-07 | 120 |
hematopoietic cell | 7.90e-07 | 177 |
nongranular leukocyte | 9.65e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.00e-15 | 114 |
neural tube | 9.84e-13 | 56 |
neural rod | 9.84e-13 | 56 |
future spinal cord | 9.84e-13 | 56 |
neural keel | 9.84e-13 | 56 |
regional part of nervous system | 3.66e-12 | 53 |
regional part of brain | 3.66e-12 | 53 |
regional part of forebrain | 4.16e-12 | 41 |
forebrain | 4.16e-12 | 41 |
anterior neural tube | 4.16e-12 | 41 |
future forebrain | 4.16e-12 | 41 |
telencephalon | 2.29e-11 | 34 |
brain grey matter | 4.50e-11 | 34 |
gray matter | 4.50e-11 | 34 |
brain | 2.39e-10 | 68 |
future brain | 2.39e-10 | 68 |
regional part of telencephalon | 2.91e-10 | 32 |
cerebral hemisphere | 3.42e-10 | 32 |
nervous system | 1.97e-09 | 89 |
central nervous system | 2.42e-09 | 81 |
regional part of cerebral cortex | 8.34e-08 | 22 |
organ system subdivision | 2.47e-07 | 223 |
cerebral cortex | 3.94e-07 | 25 |
pallium | 3.94e-07 | 25 |
pre-chordal neural plate | 4.22e-07 | 61 |
neural plate | 4.74e-07 | 82 |
presumptive neural plate | 4.74e-07 | 82 |
neocortex | 5.07e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.29e-09 | 106 |
cell type cancer | 7.87e-07 | 143 |