FFCP PHASE1:Hg19::chr6:43745444..43745451,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:43745444..43745451,+ to FFCP PHASE1:Hg19::chr6:43745444..43745451,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7422 | |EntrezGene=7422 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12680 | |HGNC=12680 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000497139_5end | |||
|cluster_id=chr6:43745444..43745451,+ | |||
|coexpression_cluster_id=C356 | |||
|description=CAGE_peak_13_at_VEGFA_5end | |||
|id=chr6:43745444..43745451,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000511;2.67e-11;1!CL:0002625;2.67e-11;1!CL:0000216;2.67e-11;1!CL:1000306;4.22e-11;4!CL:0002547;4.22e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.45e-11,1;CL:0002625,1.45e-11,1;CL:0000216,1.45e-11,1;CL:1000306,5.18e-11,4;CL:0002547,5.18e-11,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;2.67e-11;1!DOID:0070004;2.67e-11;1!DOID:3571;2.67e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.31e-11,1;DOID:4960,6.00e-11,1;DOID:0070004,6.00e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0003102!1.21e-07!95;UBERON:0003929!8.81e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;2.67e-11;1!UBERON:0001343;2.67e-11;1!UBERON:0004910;2.67e-11;1!UBERON:0004813;2.67e-11;1!UBERON:0004797;4.22e-11;4!UBERON:0000415;4.22e-11;4!UBERON:0007240;4.22e-11;4!UBERON:0005742;4.22e-11;4!UBERON:0005734;4.22e-11;4!UBERON:0004664;4.22e-11;4!UBERON:0004663;4.22e-11;4!UBERON:0002107;1.34e-08;19!UBERON:0006925;1.34e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.45e-11,1;UBERON:0001343,1.45e-11,1;UBERON:0004910,1.45e-11,1;UBERON:0005154,1.45e-11,1;UBERON:0005295,1.45e-11,1;UBERON:0004813,1.45e-11,1;UBERON:0005297,1.45e-11,1;UBERON:0005294,1.45e-11,1;UBERON:0010141,1.45e-11,1;UBERON:0005891,1.45e-11,1;UBERON:0000415,5.18e-11,4;UBERON:0007240,5.18e-11,4;UBERON:0005742,5.18e-11,4;UBERON:0005734,5.18e-11,4;UBERON:0004664,5.18e-11,4;UBERON:0004663,5.18e-11,4;UBERON:0002107,8.97e-09,19;UBERON:0006925,8.97e-09,19;UBERON:0008836,8.97e-09,19;UBERON:0008835,1.35e-07,22;UBERON:0003894,1.35e-07,22;UBERON:0009854,2.85e-07,23 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0.286235987131057,0,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0.369754010166788,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0.411167888021826,0.309706370895104,0.28769239232215,0,0,0,0,0,0.752969358170419,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0.434539556882471,0,0,0,0,0.087834785693126,0,0,0,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51577443545116,1.14734648299525,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.448346041655403,0,0,0,0,0.491337269247072,0.206651562351531,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0,0.30648779579902,0.45071417671979,0,0,0.427114777637135,1.05965950579781,0,0.206105058476878,0.515281080091258,0,0,0.0974370051611986,0.504867548488229,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0,0.193260853163297,0.818238361772504,0,0,0,0,0.207322110030741,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0.337169380156203,0,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,1.26755034821831,1.96565443335525,0,0,0,0.171567810298526,0.109750285408626,0,0.100528972411631,0.185176890317059,0.325808305310325,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0.50496973370552,0,0,0,0,0.102827492703324,0,0,0,0,0,0.775630294546667,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0.623912584592421,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.920771839728375,0.280660094433074,0,0,1.12597744800525,0,0.154209693802656,0,0.0821271560138091,0,0,0.120859449591622,0.40101294060657,1.19705285616665,0.34444334449382,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0.27470839445503,0.082509499920588,0,0,1.6068392984416,0.96670718292122,0.154048617114644,0,0,0.214840489736547,0,0.170453254832202,0.267096106940212,1.15699440752685,0.576570202095319,1.14851441245126,0.910420027699949,0,1.5740617341532,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0,0,0.487426979262569,0,0.136499911407986,0.565621727814851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0.371606350251437,0,0.497992903438899,0,0,0,0.423347165447766,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0.37428108081644,0,0,0,0,0,0,0.921482106297696,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0,0,0.102268682502155,0.123084805461069,0.311039587661807,0.0898683511473268,0.895105873378046,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0.874813840149763,0.173624994933292,0,0,0,0.110579259931225,0,0,0.32681539055697,0,0,0.227884111694002,0,0.0897576444097721,0,0.31900115973192,0,0.533034776018635,0,0.156980256395025,0,0,0,0.167821586975843,0,0,0.421996129056054,0,0,0.216388639742091,0,0,1.22206028986725,0.296521128680622,0,0.104421949505455,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0,0,0,0.313932918407225,0,0,0.693373365065693,0.173559738335131,0.293977192243133,0,0,0.51595809741485,0,0.0730893170861856,0,0,0.0882561266915003,0.451961481561065,0.137041924646751,0,0,0,0.0801588202515337,0,0,1.15272333723285,0,0,0.864328787928898,0,0.707082103850386,0,0,0,0.577901179803038,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0.335917362433631,1.80149941771202,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0.408610218334727,0,0,0,0,0,0,0,0,0.209818352539992,0.316801009558219,0,0.383830394638891,0,0,0,0,0,0,0,0.656740165994712,0.170388021785422,0.453248366080503,0,1.32506888912221,0,0.13223260174269,0,0,0,0.314408610199332,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0.303298235083296,0.285465333544967,0.941063278792687,0,0.144921028610825,0,0,0,0.189403005275089,0.251567901752575,0,0.228840068396924,0.302461847526478,0,0.147855149989634,0,0,0,0,0.53168342911599,0,0.150257608997218,0,0,0.363697318405119,0.322231671127465,0,0,0,0,0.336749488765919,0,0,0,0,0.453411851024545,0,0.489473409012935,0,0,0,0,0,0,0.512483037175893,0,0,0,0.194860308839388,0,0.163565394255844,3.93131818615695,0,0,0,0.320075189082423,1.03328987796489,0,0.184105950251841,0,0,0,0.107824811396682,0.629063767423586,0,0,1.06287460050841,0.867550349813015,0,0,0.157723490002507,0,0.352675943690684,0.6124909547064,0,0,0.319267718114302,0,0,0,0,0,0.196295437002051,0.11796972334774,0.183428598521679,0,0.381382095467167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| 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| ||
|short_description=p13@VEGFA | |||
}} | }} |
Latest revision as of 22:58, 18 September 2015
Short description: | p13@VEGFA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_VEGFA_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | -5bp_to_ENST00000497139_5end |
EntrezGene: | VEGFA |
HGNC: | 12680 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.45e-11 | 1 |
seminiferous tubule epithelial cell | 1.45e-11 | 1 |
Sertoli cell | 1.45e-11 | 1 |
fibroblast of tunica adventitia of artery | 5.18e-11 | 4 |
fibroblast of the aortic adventitia | 5.18e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.45e-11 | 1 |
seminiferous tubule of testis | 1.45e-11 | 1 |
epithelium of male gonad | 1.45e-11 | 1 |
epithelial cord | 1.45e-11 | 1 |
sex cord | 1.45e-11 | 1 |
seminiferous tubule epithelium | 1.45e-11 | 1 |
testis sex cord | 1.45e-11 | 1 |
genital ridge | 1.45e-11 | 1 |
primitive sex cord of indifferent gonad | 1.45e-11 | 1 |
coelomic epithelium | 1.45e-11 | 1 |
artery wall | 5.18e-11 | 4 |
tunica adventitia of artery | 5.18e-11 | 4 |
adventitia | 5.18e-11 | 4 |
tunica adventitia of blood vessel | 5.18e-11 | 4 |
aorta tunica adventitia | 5.18e-11 | 4 |
aorta wall | 5.18e-11 | 4 |
liver | 8.97e-09 | 19 |
digestive gland | 8.97e-09 | 19 |
liver bud | 8.97e-09 | 19 |
hepatic diverticulum | 1.35e-07 | 22 |
liver primordium | 1.35e-07 | 22 |
digestive tract diverticulum | 2.85e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.31e-11 | 1 |
bone marrow cancer | 6.00e-11 | 1 |
myeloma | 6.00e-11 | 1 |