FFCP PHASE1:Hg19::chr6:33399093..33399111,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:33399093..33399111,+ to FFCP PHASE1:Hg19::chr6:33399093..33399111,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8831 | |EntrezGene=8831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11497 | |HGNC=11497 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-396bp_to_ENST00000428982_5end | |||
|cluster_id=chr6:33399093..33399111,+ | |||
|coexpression_cluster_id=C203 | |||
|description=CAGE_peak_5_at_SYNGAP1_5end | |||
|id=chr6:33399093..33399111,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.01e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.23e-10;5!CL:0000540;3.74e-09;6!CL:0000404;3.74e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.81e-10,5;CL:0000540,3.51e-09,6;CL:0000031,3.51e-09,6;CL:0000404,3.51e-09,6;CL:0000047,5.51e-07,8;CL:0001024,5.89e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000031;3.74e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;4.06e-10;31!DOID:1240;2.05e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.82e-10,31;DOID:1240,8.12e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.48e-32!94;UBERON:0001016!4.48e-32!94;UBERON:0005743!4.45e-30!86;UBERON:0001017!2.74e-29!82;UBERON:0001049!1.32e-27!57;UBERON:0005068!1.32e-27!57;UBERON:0006241!1.32e-27!57;UBERON:0007135!1.32e-27!57;UBERON:0002780!8.53e-27!41;UBERON:0001890!8.53e-27!41;UBERON:0006240!8.53e-27!41;UBERON:0003080!6.49e-26!42;UBERON:0002616!1.93e-24!59;UBERON:0000955!3.15e-24!69;UBERON:0006238!3.15e-24!69;UBERON:0002346!1.24e-23!90;UBERON:0003075!1.21e-21!86;UBERON:0007284!1.21e-21!86;UBERON:0001869!1.75e-21!32;UBERON:0002619!1.76e-21!22;UBERON:0001893!1.94e-21!34;UBERON:0002791!2.32e-20!33;UBERON:0002020!7.94e-20!34;UBERON:0003528!7.94e-20!34;UBERON:0007023!4.10e-19!115;UBERON:0001950!9.72e-19!20;UBERON:0003056!2.06e-18!61;UBERON:0000956!3.23e-18!25;UBERON:0000203!3.23e-18!25;UBERON:0000924!1.45e-16!173;UBERON:0006601!1.45e-16!173;UBERON:0004121!4.70e-15!169;UBERON:0000153!2.29e-13!129;UBERON:0007811!2.29e-13!129;UBERON:0000033!1.92e-12!123;UBERON:0000349!4.01e-08!5;UBERON:0000200!6.98e-08!6;UBERON:0001872!3.38e-07!5;UBERON:0001894!7.67e-07!7;UBERON:0006222!7.67e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001954;3.07e-12;2!UBERON:0003022;3.07e-12;2!UBERON:0002421;3.07e-12;2!UBERON:0002600;3.07e-12;2!UBERON:0002619;6.18e-11;22!UBERON:0002021;9.89e-11;5!UBERON:0000956;1.44e-09;25!UBERON:0000203;1.44e-09;25!UBERON:0002780;1.63e-08;41!UBERON:0001890;1.63e-08;41!UBERON:0002114;4.38e-08;2!UBERON:0001869;2.40e-07;32!UBERON:0002791;6.15e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,3.17e-12,2;UBERON:0003022,3.17e-12,2;UBERON:0002421,3.17e-12,2;UBERON:0002600,3.17e-12,2;UBERON:0002619,5.79e-11,22;UBERON:0002021,9.61e-11,5;UBERON:0000956,1.36e-09,25;UBERON:0000203,1.36e-09,25;UBERON:0002780,4.09e-09,41;UBERON:0001890,4.09e-09,41;UBERON:0003080,4.09e-09,41;UBERON:0006240,4.09e-09,41;UBERON:0001016,7.18e-09,89;UBERON:0001017,1.21e-08,81;UBERON:0002114,4.39e-08,2;UBERON:0002791,2.30e-07,32;UBERON:0001869,2.30e-07,32;UBERON:0003056,4.65e-07,61;UBERON:0003528,6.82e-07,34;UBERON:0002020,6.82e-07,34;UBERON:0001893,6.82e-07,34;UBERON:0000073,9.24e-07,53;UBERON:0002616,9.24e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.157421562627358,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.568676929949686,1.76160263600908,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,0.560508562981536,0.790152254325231,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,1.32529768321485,1.39432731443422,0.725627385107593,0.756962552626885,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.427296284509893,0,0,0,0.28853842595289,0,0.159426272728822,1.59663497146253,0,18.2039281142539,3.89546328329467,5.05434920604226,1.59764275323235,1.09675927041116,0,1.01575066680962,0,0.80719882876419,0,0,0,0,0,0.586164286206121,0,0,1.08182271390393,0.66614393599564,0,0,0,0.485442086998054,0,0,0,0,0,0.994147647766298,0.844016498463076,0,0,0.211125408127993,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,1.93866549219044,0.556608588971108,0,0,0.174919999992391,0,0,0,0,0,0,0,0.885741385813839,0,0,0.110579259931225,0,0.658156191461918,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.627921025580099,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0.611030144933625,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633107959558787,0,0,0.426905989478705,0,0,0.114536596165916,0,0,0,0,0.271808412147228,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338693328263138,6.36183751847443,1.36203406111576,2.73280352390533,2.61324929534744,2.9080823662043,0,0,0.91124334987037,0,0,0.157363764404994,0,0,0,0,0,1.5256112259285,0,0,0,0,0,0,0,0,0,0.904980694530854,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0.886068179966986,0.610131324509816,0.3755727921195,0.573409195690071,0.110929051536852,0.124192805882767,0.691743174681154,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.87093721161733,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0.109209638192014,0.33946505990805,0,0.123935764259002,0.558644917973244,0,0,0,0,0,0.642292250964595,4.25089728976755,0,2.2562800066483,1.51243017733031,0.414943514785307,1.29180516505481,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,1.56215619722769,0.413373593002368,0.887821342714695,0.546974809018219,0,0,2.28632617667507,0,1.60710550763486,0.336283722218824,1.21393120847326,0.682986574053893,0,0,0.171488009437418,0.135939465953663,0.328863867814245,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.150962843566674,0,0.437119121007915,0,0,0,0.981542335574726,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,1.46067277649303,0.458729283404541,0,0,1.35982980381829,1.74540276136151,1.0580536810308,0,0,0,1.00933139868063,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0.23806443146374,0.129177819672012,0.434523000071005,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0.733448665097199,1.22068853494722,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.157421562627358,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.568676929949686,1.76160263600908,0,0,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,0.560508562981536,0.790152254325231,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0.604820229674197,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58565817968474,1.32529768321485,1.39432731443422,0.725627385107593,0.756962552626885,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0.646882724578552,0.128343036279748,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.427296284509893,0,0,0,0.28853842595289,0,0.159426272728822,1.59663497146253,0,18.2039281142539,3.89546328329467,5.05434920604226,1.59764275323235,1.09675927041116,0,1.01575066680962,0,0.80719882876419,0,0,0,0,0,0.586164286206121,0,0,1.08182271390393,0.66614393599564,0,0,0,0.485442086998054,0,0,0,0,0,0.994147647766298,0.844016498463076,0,0,0.211125408127993,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,1.93866549219044,0.556608588971108,0,0,0.174919999992391,0,0,0,0,0,0,0,0.885741385813839,0,0,0.110579259931225,0,0.658156191461918,0.10893846351899,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.627921025580099,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0.611030144933625,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633107959558787,0,0,0.426905989478705,0,0,0.114536596165916,0,0,0,0,0.271808412147228,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338693328263138,6.36183751847443,1.36203406111576,2.73280352390533,2.61324929534744,2.9080823662043,0,0,0.91124334987037,0,0,0.157363764404994,0,0,0,0,0,1.5256112259285,0,0,0,0,0,0,0,0,0,0.904980694530854,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0.886068179966986,0.610131324509816,0.3755727921195,0.573409195690071,0.110929051536852,0.124192805882767,0.691743174681154,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.87093721161733,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0.109209638192014,0.33946505990805,0,0.123935764259002,0.558644917973244,0,0,0,0,0,0.642292250964595,4.25089728976755,0,2.2562800066483,1.51243017733031,0.414943514785307,1.29180516505481,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,1.56215619722769,0.413373593002368,0.887821342714695,0.546974809018219,0,0,2.28632617667507,0,1.60710550763486,0.336283722218824,1.21393120847326,0.682986574053893,0,0,0.171488009437418,0.135939465953663,0.328863867814245,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.150962843566674,0,0.437119121007915,0,0,0,0.981542335574726,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,1.46067277649303,0.458729283404541,0,0,1.35982980381829,1.74540276136151,1.0580536810308,0,0,0,1.00933139868063,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0,0.23806443146374,0.129177819672012,0.434523000071005,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0.733448665097199,1.22068853494722,0,0,0 | ||
|short_description=p5@SYNGAP1 | |||
}} | }} |
Latest revision as of 07:36, 18 September 2015
Short description: | p5@SYNGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SYNGAP1_5end |
Coexpression cluster: | C203_acute_NK_chronic_CD133_lymphoma_immature_Dendritic |
Association with transcript: | -396bp_to_ENST00000428982_5end |
EntrezGene: | SYNGAP1 |
HGNC: | 11497 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.81e-10 | 5 |
neuron | 3.51e-09 | 6 |
neuroblast | 3.51e-09 | 6 |
electrically signaling cell | 3.51e-09 | 6 |
neuronal stem cell | 5.51e-07 | 8 |
CD34-positive, CD38-negative hematopoietic stem cell | 5.89e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 3.17e-12 | 2 |
lobe parts of cerebral cortex | 3.17e-12 | 2 |
hippocampal formation | 3.17e-12 | 2 |
limbic lobe | 3.17e-12 | 2 |
regional part of cerebral cortex | 5.79e-11 | 22 |
occipital lobe | 9.61e-11 | 5 |
cerebral cortex | 1.36e-09 | 25 |
pallium | 1.36e-09 | 25 |
regional part of forebrain | 4.09e-09 | 41 |
forebrain | 4.09e-09 | 41 |
anterior neural tube | 4.09e-09 | 41 |
future forebrain | 4.09e-09 | 41 |
nervous system | 7.18e-09 | 89 |
central nervous system | 1.21e-08 | 81 |
duodenum | 4.39e-08 | 2 |
regional part of telencephalon | 2.30e-07 | 32 |
cerebral hemisphere | 2.30e-07 | 32 |
pre-chordal neural plate | 4.65e-07 | 61 |
brain grey matter | 6.82e-07 | 34 |
gray matter | 6.82e-07 | 34 |
telencephalon | 6.82e-07 | 34 |
regional part of nervous system | 9.24e-07 | 53 |
regional part of brain | 9.24e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.82e-10 | 31 |
leukemia | 8.12e-08 | 39 |