FFCP PHASE1:Hg19::chr6:32920794..32920890,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:32920794..32920890,- to FFCP PHASE1:Hg19::chr6:32920794..32920890,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3108 | |EntrezGene=3108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4934 | |HGNC=4934 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z4Y5,Q5SP00,A2AAT8 | |UniProt=B7Z4Y5,Q5SP00,A2AAT8 | ||
|association_with_transcript=0bp_to_ENST00000341486,ENST00000395303,ENST00000395305,ENST00000475627,ENST00000477541_5end | |||
|cluster_id=chr6:32920794..32920890,- | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_1_at_HLA-DMA_5end | |||
|id=chr6:32920794..32920890,- | |||
|ontology_enrichment_celltype=CL:0000738!3.00e-47!140;CL:0002087!9.99e-44!119;CL:0000037!1.60e-41!172;CL:0000566!1.60e-41!172;CL:0002031!7.41e-40!124;CL:0000988!1.14e-38!182;CL:0002032!1.52e-38!165;CL:0000837!1.52e-38!165;CL:0002009!3.34e-28!65;CL:0002194!6.23e-27!63;CL:0000576!6.23e-27!63;CL:0000040!6.23e-27!63;CL:0000559!6.23e-27!63;CL:0000557!5.90e-26!71;CL:0000766!1.42e-25!76;CL:0002057!2.10e-24!42;CL:0000839!1.61e-23!70;CL:0000763!2.17e-22!112;CL:0000049!2.17e-22!112;CL:0000860!3.43e-21!45;CL:0000542!7.54e-15!53;CL:0000051!7.54e-15!53;CL:0000838!2.01e-14!52;CL:0000945!1.42e-13!24;CL:0000826!1.42e-13!24;CL:0000236!1.52e-09!14;CL:0000134!9.68e-09!358;CL:0000451!1.95e-08!10;CL:0002320!1.97e-08!365;CL:0000990!2.80e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.38e-18;39!CL:0000234;1.38e-18;39!CL:0000860;2.19e-18;33!CL:0002057;2.19e-18;33!CL:0000576;1.50e-16;48!CL:0000945;8.58e-14;24!CL:0002087;2.62e-13;104!CL:0000766;2.27e-12;69!CL:0000738;1.84e-11;136!CL:0000542;1.64e-09;53!CL:0000236;2.83e-09;13!CL:0000451;1.45e-08;10!CL:0000988;4.12e-08;177!CL:0000763;1.19e-07;100!CL:0000990;2.19e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.39e-51,136;CL:0002087,1.28e-47,115;CL:0000037,1.73e-45,168;CL:0000988,1.16e-43,177;CL:0002031,2.17e-43,120;CL:0002032,2.16e-42,161;CL:0000837,2.16e-42,161;CL:0002009,4.13e-32,61;CL:0002194,8.80e-31,59;CL:0000576,8.80e-31,59;CL:0000040,8.80e-31,59;CL:0000559,8.80e-31,59;CL:0000557,2.16e-29,67;CL:0000766,8.14e-29,72;CL:0000473,1.15e-28,48;CL:0000234,1.15e-28,48;CL:0000839,9.94e-27,66;CL:0000763,1.68e-25,108;CL:0000049,1.68e-25,108;CL:0000860,8.69e-25,42;CL:0002057,8.69e-25,42;CL:0000542,3.16e-15,53;CL:0000051,3.16e-15,53;CL:0000838,8.59e-15,52;CL:0000945,8.96e-14,24;CL:0000826,8.96e-14,24;CL:0000134,5.44e-10,354;CL:0000236,1.12e-09,14;CL:0002320,1.20e-09,361;CL:0000451,1.50e-08,10;CL:0000990,2.24e-07,8;CL:0000219,4.11e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;4.65e-18;42!CL:0000051;1.64e-09;53!CL:0000049;9.33e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.93e-36!102;UBERON:0003061!7.93e-36!102;UBERON:0002193!1.74e-31!112;UBERON:0002371!1.22e-26!80;UBERON:0001474!8.83e-22!86;UBERON:0007023!1.19e-21!115;UBERON:0002405!1.37e-20!115;UBERON:0004765!1.84e-16!101;UBERON:0001434!1.84e-16!101;UBERON:0002384!4.72e-08!375;UBERON:0000178!1.32e-07!15;UBERON:0000179!1.32e-07!15;UBERON:0000463!1.32e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;8.88e-09;32!UBERON:0000178;1.02e-07;15!UBERON:0000179;1.02e-07;15!UBERON:0000463;1.02e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.63e-39,98;UBERON:0003061,2.63e-39,98;UBERON:0002193,4.24e-34,108;UBERON:0002371,7.16e-30,76;UBERON:0002405,2.94e-27,93;UBERON:0001474,9.29e-25,82;UBERON:0007023,6.30e-22,114;UBERON:0004765,4.39e-21,90;UBERON:0001434,1.80e-17,100;UBERON:0002384,3.61e-09,371;UBERON:0000178,1.04e-07,15;UBERON:0000179,1.04e-07,15;UBERON:0000463,1.04e-07,15;UBERON:0003081,3.62e-07,203 | |||
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| ||
|short_description=p1@HLA-DMA | |||
}} | }} |
Latest revision as of 04:33, 18 September 2015
Short description: | p1@HLA-DMA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DMA_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 0bp_to_ENST00000341486, ENST00000395303, ENST00000395305, ENST00000475627, ENST00000477541_5end |
EntrezGene: | HLA-DMA |
HGNC: | 4934 |
UniProt: | B7Z4Y5Q5SP00A2AAT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.63e-39 | 98 |
blood island | 2.63e-39 | 98 |
hemolymphoid system | 4.24e-34 | 108 |
bone marrow | 7.16e-30 | 76 |
immune system | 2.94e-27 | 93 |
bone element | 9.29e-25 | 82 |
adult organism | 6.30e-22 | 114 |
skeletal element | 4.39e-21 | 90 |
skeletal system | 1.80e-17 | 100 |
connective tissue | 3.61e-09 | 371 |
blood | 1.04e-07 | 15 |
haemolymphatic fluid | 1.04e-07 | 15 |
organism substance | 1.04e-07 | 15 |
lateral plate mesoderm | 3.62e-07 | 203 |