FFCP PHASE1:Hg19::chr6:32784768..32784839,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:32784768..32784839,- to FFCP PHASE1:Hg19::chr6:32784768..32784839,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3112 | |EntrezGene=3112 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4937 | |HGNC=4937 | ||
|TSSclassifier=strong | |||
|UniProt=P13765,Q5QNS2 | |UniProt=P13765,Q5QNS2 | ||
|association_with_transcript=0bp_to_ENST00000438763,NM_002120,uc003oca.2,uc011dqg.1_5end | |||
|cluster_id=chr6:32784768..32784839,- | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_1_at_HLA-DOB_5end | |||
|id=chr6:32784768..32784839,- | |||
|ontology_enrichment_celltype=CL:0000945!1.62e-21!24;CL:0000826!1.62e-21!24;CL:0000542!5.07e-13!53;CL:0000051!5.07e-13!53;CL:0000236!6.06e-13!14;CL:0000738!1.64e-12!140;CL:0000838!2.25e-12!52;CL:0002087!5.26e-09!119;CL:0002031!5.47e-08!124;CL:0000037!7.10e-07!172;CL:0000566!7.10e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.66e-38;24!CL:0000236;4.76e-21;13!CL:0000542;3.62e-11;53!CL:0000453;2.00e-10;5!CL:0000244;9.42e-07;4!CL:0000731;9.42e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.73e-38,24;CL:0000826,2.73e-38,24;CL:0000236,1.06e-22,14;CL:0000542,2.98e-17,53;CL:0000051,2.98e-17,53;CL:0000838,3.44e-16,52;CL:0000453,2.03e-10,5;CL:0000738,4.15e-10,136;CL:0002087,2.35e-07,115;CL:0000244,7.53e-07,4;CL:0000731,7.53e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000051;3.62e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.21e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.11e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.65e-17!115;UBERON:0000178!3.79e-11!15;UBERON:0000179!3.79e-11!15;UBERON:0000463!3.79e-11!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.76e-16;15!UBERON:0000179;6.76e-16;15!UBERON:0000463;6.76e-16;15!UBERON:0002390;4.50e-13;32!UBERON:0004177;1.85e-09;5!UBERON:0005057;1.85e-09;5!UBERON:0002193;6.69e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.04e-16,15;UBERON:0000179,7.04e-16,15;UBERON:0000463,7.04e-16,15;UBERON:0007023,1.72e-09,114;UBERON:0004119,4.30e-07,160;UBERON:0000925,4.30e-07,160;UBERON:0006595,4.30e-07,160 | |||
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| ||
|short_description=p1@HLA-DOB | |||
}} | }} |
Latest revision as of 03:58, 18 September 2015
Short description: | p1@HLA-DOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DOB_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000438763, NM_002120, uc003oca.2, uc011dqg.1_5end |
EntrezGene: | HLA-DOB |
HGNC: | 4937 |
UniProt: | P13765Q5QNS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.73e-38 | 24 |
pro-B cell | 2.73e-38 | 24 |
B cell | 1.06e-22 | 14 |
lymphocyte | 2.98e-17 | 53 |
common lymphoid progenitor | 2.98e-17 | 53 |
lymphoid lineage restricted progenitor cell | 3.44e-16 | 52 |
Langerhans cell | 2.03e-10 | 5 |
leukocyte | 4.15e-10 | 136 |
nongranular leukocyte | 2.35e-07 | 115 |
transitional epithelial cell | 7.53e-07 | 4 |
urothelial cell | 7.53e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
blood | 7.04e-16 | 15 |
haemolymphatic fluid | 7.04e-16 | 15 |
organism substance | 7.04e-16 | 15 |
adult organism | 1.72e-09 | 114 |
endoderm-derived structure | 4.30e-07 | 160 |
endoderm | 4.30e-07 | 160 |
presumptive endoderm | 4.30e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.11e-08 | 10 |