FFCP PHASE1:Hg19::chr6:31324924..31324930,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:31324924..31324930,- to FFCP PHASE1:Hg19::chr6:31324924..31324930,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3106 | |EntrezGene=3106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4932 | |HGNC=4932 | ||
|TSSclassifier=strong | |||
|UniProt=B4DUK6,F5H017 | |UniProt=B4DUK6,F5H017 | ||
|association_with_transcript=25bp_to_ENST00000428231,ENST00000452596,ENST00000498007_5end | |||
|cluster_id=chr6:31324924..31324930,- | |||
|description=CAGE_peak_6_at_HLA-B_5end | |||
|id=chr6:31324924..31324930,- | |||
|ontology_enrichment_celltype=CL:0000738!1.39e-25!140;CL:0002087!1.83e-21!119;CL:0000766!8.74e-21!76;CL:0002031!1.59e-20!124;CL:0002009!4.63e-20!65;CL:0002194!3.74e-19!63;CL:0000576!3.74e-19!63;CL:0000040!3.74e-19!63;CL:0000559!3.74e-19!63;CL:0002057!5.53e-19!42;CL:0000860!1.80e-18!45;CL:0000557!1.08e-17!71;CL:0000988!3.03e-16!182;CL:0000839!3.31e-16!70;CL:0002032!9.21e-15!165;CL:0000837!9.21e-15!165;CL:0000037!2.21e-14!172;CL:0000566!2.21e-14!172;CL:0000763!1.50e-10!112;CL:0000049!1.50e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.30e-19;33!CL:0002057;1.30e-19;33!CL:0000473;5.59e-17;39!CL:0000234;5.59e-17;39!CL:0000576;1.08e-16;48!CL:0000766;8.60e-13;69!CL:0002087;7.36e-09;104!CL:0000738;1.01e-07;136!CL:0000081;8.49e-07;11!CL:0000094;8.57e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.11e-32,136;CL:0000766,7.49e-32,72;CL:0002009,2.29e-30,61;CL:0002194,5.50e-29,59;CL:0000576,5.50e-29,59;CL:0000040,5.50e-29,59;CL:0000559,5.50e-29,59;CL:0000557,4.42e-27,67;CL:0002087,3.69e-25,115;CL:0000839,4.33e-25,66;CL:0000473,5.85e-25,48;CL:0000234,5.85e-25,48;CL:0000860,6.53e-25,42;CL:0002057,6.53e-25,42;CL:0002031,4.11e-24,120;CL:0000988,1.60e-21,177;CL:0000037,1.72e-20,168;CL:0002032,3.17e-20,161;CL:0000837,3.17e-20,161;CL:0000763,2.36e-19,108;CL:0000049,2.36e-19,108;CL:0002320,3.91e-08,361;CL:0000134,6.28e-08,354;CL:0000094,7.11e-07,8;CL:0000081,7.12e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.39e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.75e-18!102;UBERON:0003061!2.75e-18!102;UBERON:0002193!2.86e-18!112;UBERON:0002371!2.24e-13!80;UBERON:0002405!1.81e-12!115;UBERON:0001474!1.82e-11!86;UBERON:0004765!6.73e-09!101;UBERON:0001434!6.73e-09!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.08e-07;9!UBERON:0001557;1.08e-07;9!UBERON:0000178;9.38e-07;15!UBERON:0000179;9.38e-07;15!UBERON:0000463;9.38e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.65e-28,98;UBERON:0003061,5.65e-28,98;UBERON:0002193,4.98e-27,108;UBERON:0002371,1.08e-21,76;UBERON:0002405,3.17e-21,93;UBERON:0001474,8.29e-20,82;UBERON:0004765,7.55e-19,90;UBERON:0001434,4.22e-17,100;UBERON:0003081,4.03e-09,203;UBERON:0001737,7.89e-08,9;UBERON:0002384,8.98e-08,371;UBERON:0001557,2.26e-07,19;UBERON:0002204,3.39e-07,167;UBERON:0000178,6.23e-07,15;UBERON:0000179,6.23e-07,15;UBERON:0000463,6.23e-07,15 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,2.53299878168311,0,0,0.245733936501509,0.697801167972428,0,0,0,0.331397375727916,0,0,0,0,0.492484232307152,0.408001382488506,0,0,0,0,0.840547463227464,0.985207073399349,1.02324015707783,7.47392126012918,2.68680578668049,5.88301268601089,0,0,0,0.309868802321207,25.306123382761,0,48.1976005422733,1.40381113229099,0,0,5.83008598834163,3.60605794687861,2.03557534291391,2.26725566213286,0.727752183563449,1.16214518452842,3.28934310417461,3.40677007984614,3.16461631554365,4.35473201099471,3.78371567821736,5.5159308917859,3.22742341791913,1.35426486594342,3.20011977222428,1.91034305040492,3.14612878223118,3.67300670845083,5.45579346029359,3.19668562899521,2.30895910130701,2.99195486432448,1.27867425159808,2.90209238628584,3.97169657283798,3.73693349397345,3.76872997885115,2.60741459210101,5.64690996233303,3.63239701580021,11.0483290796269,5.06339819905415,2.95757400836718,1.70083439972035,27.6749412071056,3.59451619668784,0.901061357049038,12.8580469357664,0.570025487482497,2.58591680358817,28.4956079872829,1.75996244461323,0,0.889509253863555,0.853460445133014,0,0,0,0,19.3532409497212,30.5363338472888,0.764546456250458,1.32171328579026,2.80254281490768,2.89722493252585,0,1.57204305099666,2.67281948699362,1.83905144929746,0.651844533267181,0.473447805734733,25.3274746930285,3.11949279278486,2.65145316727353,0.886135578334485,20.8518975099062,0.640456598628376,18.0782493108231,0.493313713811028,12.1594007825773,2.02862160014537,2.37258501059297,0.267540828089713,9.40819714244791,1.81294948316106,1.53288197440768,1.37450978193052,13.6630633690532,0.318565414324097,0,0.950452044448374,1.05402583354441,1.15187950038977,0,0.236777252044017,0,40.1197419017218,1.33720097891754,0,0,0,0.255725123687061,0,1.00267582127178,0,1.5905718941022,0,0,0,0.175669571386252,0.589405839739707,0,0,1.62273696827342,1.0447784237956,0,21.2256655631754,0,4.82894751728434,0,0,0,0,0,0,0.417989933073621,0.258416759169329,0,1.67360306382335,0,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,0,9.22462922052443,19.3890132074163,0,1.49091585508596,0.506522046658319,0.264818361626438,0.860509862246441,0,0.560677600142307,0,3.45334567784024,0,1.61652806483626,0,0.908144565869588,0.576175924479999,0,0,0,0.149448680551801,0.23486899728753,0,0,0,0,0,0,9.1488763833066,0,0.718618141816238,0,0,0,0,4.90380473278431,7.06118876861005,0.113432183160021,0,0,0.211931901159562,0.300091096084402,2.26715564324566,0,0.558350568994769,0,0,0,0.184099797284599,1.13152239773168,0,0,1.01736355386293,0,0,0,0,0,0.116193942869518,0,0,0,3.12899064659632,1.28648187638577,0,0,0,2.9576700009961,3.03452442140583,1.92808823906786,3.41911315470421,4.13970943775572,3.32178866755535,4.1797705529651,1.56977172100277,5.38646019724947,0,0,0,0,8.87285243752816,1.96565443335525,4.13552934676983,0,0.983907508344908,0,0.439001141634502,0,2.41269533787914,0.0925884451585296,0,0,0,0,0.234817388471643,0,1.38895653772983,5.70762456703795,0,0,0,2.10603838625314,1.33768046059855,0,0,2.26840155587818,0,0,0,0,0,1.4512968087854,0,0.75745460055828,0,0.381988425558278,0,0,0,0,0,0,0,0,0.129271715757778,3.57656445851882,0,3.45719551560332,7.28052058379563,0,0,0,0,0.542621605391443,0.823240336780769,0,0,1.58390374586686,0,0,0.699810938274399,2.43247561282381,1.00451418286425,0,0.958499421966331,1.14861935834114,0,0.289562613335158,0,0,0.336255431980582,27.5843064282698,0.862510299438069,0,0,0,0.773288812777695,0,0,12.7331194071021,0,5.8018171881045,0,1.00034104211935,1.62759014219841,0.207970861530807,0.356857977594324,0.157702415033935,0,0,0,1.03473071292505,0,0.184369168541703,2.34585759063824,0.587403472388222,1.71571711905428,2.68798433959754,0,1.28073069364133,0.606255142892519,0,0,0.248107807818777,0,0,0.128139149255701,0.511707249066704,0.64341568457443,0,0.462629081407967,0.887808626565635,0,0,0.116210378459959,0.604297247958111,0,0,0.68888668898764,0,0.262248829918848,0,0.0770153371044148,0,0,0.527758144464379,0,2.89159298970077,0,0,0,0.501689773854853,1.78413391131527,1.66215201785745,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,5.31688950606671,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,1.4245125703478,0.165284915360978,0,0,0,0,0.31481234683064,0.6970372701606,1.84820148105653,1.06461206063404,0,0,0.429374660225974,0.372158369359667,0.316379424718726,0.38126038784765,0,0.42793898803392,0.95460974377781,0,0.179872457583315,0,0,1.01091240786658,0,0,0.48763373908959,2.92456187557541,0,0.409499734223957,0.141405431953713,1.13008116620243,0,0,0,0,0,0.608731130888112,0,0.281695602532241,0,0.196498082026242,0.7133421029625,0,0.211107635297664,0,0,0,0.192444225451024,0,2.17781969722645,1.22386941009813,0.86101074534246,5.05414427002877,0.443430153536676,0.689170200620878,3.04468565539302,3.82318603571188,0,1.90585420366231,2.46817363851717,5.18778648954174,3.24018862342869,0,0,0,0.735120647943095,0,3.75099953738757,0.426851060090485,0.318852545457645,0,0,0,0,0.561594356226918,0,0.156679895773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| ||
|short_description=p6@HLA-B | |||
}} | }} |
Latest revision as of 20:22, 17 September 2015
Short description: | p6@HLA-B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HLA-B_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_ENST00000428231, ENST00000452596, ENST00000498007_5end |
EntrezGene: | HLA-B |
HGNC: | 4932 |
UniProt: | B4DUK6F5H017 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.11e-32 | 136 |
myeloid leukocyte | 7.49e-32 | 72 |
macrophage dendritic cell progenitor | 2.29e-30 | 61 |
monopoietic cell | 5.50e-29 | 59 |
monocyte | 5.50e-29 | 59 |
monoblast | 5.50e-29 | 59 |
promonocyte | 5.50e-29 | 59 |
granulocyte monocyte progenitor cell | 4.42e-27 | 67 |
nongranular leukocyte | 3.69e-25 | 115 |
myeloid lineage restricted progenitor cell | 4.33e-25 | 66 |
defensive cell | 5.85e-25 | 48 |
phagocyte | 5.85e-25 | 48 |
classical monocyte | 6.53e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.53e-25 | 42 |
hematopoietic lineage restricted progenitor cell | 4.11e-24 | 120 |
hematopoietic cell | 1.60e-21 | 177 |
hematopoietic stem cell | 1.72e-20 | 168 |
hematopoietic oligopotent progenitor cell | 3.17e-20 | 161 |
hematopoietic multipotent progenitor cell | 3.17e-20 | 161 |
myeloid cell | 2.36e-19 | 108 |
common myeloid progenitor | 2.36e-19 | 108 |
connective tissue cell | 3.91e-08 | 361 |
mesenchymal cell | 6.28e-08 | 354 |
granulocyte | 7.11e-07 | 8 |
blood cell | 7.12e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.65e-28 | 98 |
blood island | 5.65e-28 | 98 |
hemolymphoid system | 4.98e-27 | 108 |
bone marrow | 1.08e-21 | 76 |
immune system | 3.17e-21 | 93 |
bone element | 8.29e-20 | 82 |
skeletal element | 7.55e-19 | 90 |
skeletal system | 4.22e-17 | 100 |
lateral plate mesoderm | 4.03e-09 | 203 |
larynx | 7.89e-08 | 9 |
connective tissue | 8.98e-08 | 371 |
upper respiratory tract | 2.26e-07 | 19 |
musculoskeletal system | 3.39e-07 | 167 |
blood | 6.23e-07 | 15 |
haemolymphatic fluid | 6.23e-07 | 15 |
organism substance | 6.23e-07 | 15 |