FFCP PHASE1:Hg19::chr6:16761678..16761715,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:16761678..16761715,- to FFCP PHASE1:Hg19::chr6:16761678..16761715,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6310 | |EntrezGene=6310 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10548 | |HGNC=10548 | ||
|TSSclassifier=strong | |||
|UniProt=P54253 | |UniProt=P54253 | ||
|association_with_transcript=0bp_to_ENST00000244769,ENST00000344707,ENST00000467008,ENST00000473388,ENST00000479680,ENST00000483954,ENST00000492857_5end | |||
|cluster_id=chr6:16761678..16761715,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_ATXN1_5end | |||
|id=chr6:16761678..16761715,- | |||
|ontology_enrichment_celltype=CL:0000766!6.44e-21!76;CL:0002057!2.67e-19!42;CL:0000738!1.42e-18!140;CL:0000557!5.08e-17!71;CL:0002009!1.51e-16!65;CL:0000860!1.60e-16!45;CL:0002194!4.89e-16!63;CL:0000576!4.89e-16!63;CL:0000040!4.89e-16!63;CL:0000559!4.89e-16!63;CL:0000839!1.50e-15!70;CL:0002087!1.41e-13!119;CL:0002031!2.97e-13!124;CL:0002032!1.60e-07!165;CL:0000837!1.60e-07!165;CL:0000763!1.82e-07!112;CL:0000049!1.82e-07!112;CL:0000037!2.32e-07!172;CL:0000566!2.32e-07!172;CL:0000988!5.75e-07!182;CL:0000791!9.87e-07!18;CL:0000789!9.87e-07!18;CL:0002420!9.87e-07!18;CL:0002419!9.87e-07!18;CL:0000790!9.87e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.71e-19;33!CL:0002057;2.71e-19;33!CL:0000473;1.42e-16;39!CL:0000234;1.42e-16;39!CL:0000576;9.89e-11;48!CL:0000766;2.83e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.84e-23,72;CL:0000473,4.84e-20,48;CL:0000234,4.84e-20,48;CL:0000738,9.60e-20,136;CL:0000860,2.67e-19,42;CL:0002057,2.67e-19,42;CL:0000557,7.47e-19,67;CL:0002009,1.80e-18,61;CL:0002194,5.84e-18,59;CL:0000576,5.84e-18,59;CL:0000040,5.84e-18,59;CL:0000559,5.84e-18,59;CL:0000839,2.82e-17,66;CL:0002087,1.27e-14,115;CL:0002031,3.00e-14,120;CL:0000763,3.64e-08,108;CL:0000049,3.64e-08,108;CL:0002032,4.52e-08,161;CL:0000837,4.52e-08,161;CL:0000037,6.90e-08,168;CL:0000988,1.11e-07,177;CL:0000791,9.87e-07,18;CL:0000789,9.87e-07,18;CL:0002420,9.87e-07,18;CL:0002419,9.87e-07,18;CL:0000790,9.87e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;2.08e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.04e-22!115;UBERON:0002390!4.00e-17!102;UBERON:0003061!4.00e-17!102;UBERON:0001049!5.62e-17!57;UBERON:0005068!5.62e-17!57;UBERON:0006241!5.62e-17!57;UBERON:0007135!5.62e-17!57;UBERON:0002193!3.63e-14!112;UBERON:0002780!4.01e-14!41;UBERON:0001890!4.01e-14!41;UBERON:0006240!4.01e-14!41;UBERON:0003080!4.70e-14!42;UBERON:0002616!4.77e-14!59;UBERON:0000955!4.82e-13!69;UBERON:0006238!4.82e-13!69;UBERON:0002371!8.12e-13!80;UBERON:0002020!3.45e-12!34;UBERON:0003528!3.45e-12!34;UBERON:0001017!6.39e-12!82;UBERON:0001893!6.60e-12!34;UBERON:0002791!1.09e-11!33;UBERON:0001474!2.87e-11!86;UBERON:0001869!4.20e-11!32;UBERON:0005743!9.46e-11!86;UBERON:0002405!6.18e-10!115;UBERON:0002619!6.87e-10!22;UBERON:0002346!1.32e-09!90;UBERON:0003075!1.67e-09!86;UBERON:0007284!1.67e-09!86;UBERON:0001950!4.63e-09!20;UBERON:0000073!1.16e-08!94;UBERON:0001016!1.16e-08!94;UBERON:0000956!2.28e-08!25;UBERON:0000203!2.28e-08!25;UBERON:0004765!2.63e-08!101;UBERON:0001434!2.63e-08!101;UBERON:0003056!5.15e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.56e-10;41!UBERON:0001890;1.56e-10;41!UBERON:0003528;2.51e-10;34!UBERON:0002020;2.51e-10;34!UBERON:0002791;2.72e-10;32!UBERON:0001893;4.05e-10;34!UBERON:0001869;4.49e-10;32!UBERON:0002619;6.89e-10;22!UBERON:0000073;1.04e-09;53!UBERON:0002616;1.04e-09;53!UBERON:0001950;4.64e-09;20!UBERON:0000956;2.25e-08;25!UBERON:0000203;2.25e-08;25!UBERON:0000955;9.98e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.55e-21,114;UBERON:0002390,1.60e-18,98;UBERON:0003061,1.60e-18,98;UBERON:0001049,5.03e-17,56;UBERON:0005068,5.03e-17,56;UBERON:0006241,5.03e-17,56;UBERON:0007135,5.03e-17,56;UBERON:0000073,4.81e-16,53;UBERON:0002616,4.81e-16,53;UBERON:0002193,2.69e-15,108;UBERON:0002371,3.68e-14,76;UBERON:0002780,4.01e-14,41;UBERON:0001890,4.01e-14,41;UBERON:0003080,4.01e-14,41;UBERON:0006240,4.01e-14,41;UBERON:0000955,5.07e-13,68;UBERON:0006238,5.07e-13,68;UBERON:0001474,1.99e-12,82;UBERON:0003528,3.45e-12,34;UBERON:0002020,3.45e-12,34;UBERON:0001893,6.60e-12,34;UBERON:0001017,7.00e-12,81;UBERON:0002405,1.66e-11,93;UBERON:0002791,2.33e-11,32;UBERON:0001869,4.20e-11,32;UBERON:0002346,4.56e-10,86;UBERON:0003075,5.59e-10,82;UBERON:0007284,5.59e-10,82;UBERON:0002619,6.87e-10,22;UBERON:0001016,1.56e-09,89;UBERON:0004765,3.20e-09,90;UBERON:0001950,4.63e-09,20;UBERON:0000956,2.28e-08,25;UBERON:0000203,2.28e-08,25;UBERON:0001434,4.07e-08,100;UBERON:0003056,2.59e-07,61 | |||
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| ||
|short_description=p1@ATXN1 | |||
}} | }} |
Latest revision as of 21:20, 16 September 2015
Short description: | p1@ATXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATXN1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000244769, ENST00000344707, ENST00000467008, ENST00000473388, ENST00000479680, ENST00000483954, ENST00000492857_5end |
EntrezGene: | ATXN1 |
HGNC: | 10548 |
UniProt: | P54253 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.84e-23 | 72 |
defensive cell | 4.84e-20 | 48 |
phagocyte | 4.84e-20 | 48 |
leukocyte | 9.60e-20 | 136 |
classical monocyte | 2.67e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.67e-19 | 42 |
granulocyte monocyte progenitor cell | 7.47e-19 | 67 |
macrophage dendritic cell progenitor | 1.80e-18 | 61 |
monopoietic cell | 5.84e-18 | 59 |
monocyte | 5.84e-18 | 59 |
monoblast | 5.84e-18 | 59 |
promonocyte | 5.84e-18 | 59 |
myeloid lineage restricted progenitor cell | 2.82e-17 | 66 |
nongranular leukocyte | 1.27e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.00e-14 | 120 |
myeloid cell | 3.64e-08 | 108 |
common myeloid progenitor | 3.64e-08 | 108 |
hematopoietic oligopotent progenitor cell | 4.52e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.52e-08 | 161 |
hematopoietic stem cell | 6.90e-08 | 168 |
hematopoietic cell | 1.11e-07 | 177 |
mature alpha-beta T cell | 9.87e-07 | 18 |
alpha-beta T cell | 9.87e-07 | 18 |
immature T cell | 9.87e-07 | 18 |
mature T cell | 9.87e-07 | 18 |
immature alpha-beta T cell | 9.87e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.55e-21 | 114 |
hematopoietic system | 1.60e-18 | 98 |
blood island | 1.60e-18 | 98 |
neural tube | 5.03e-17 | 56 |
neural rod | 5.03e-17 | 56 |
future spinal cord | 5.03e-17 | 56 |
neural keel | 5.03e-17 | 56 |
regional part of nervous system | 4.81e-16 | 53 |
regional part of brain | 4.81e-16 | 53 |
hemolymphoid system | 2.69e-15 | 108 |
bone marrow | 3.68e-14 | 76 |
regional part of forebrain | 4.01e-14 | 41 |
forebrain | 4.01e-14 | 41 |
anterior neural tube | 4.01e-14 | 41 |
future forebrain | 4.01e-14 | 41 |
brain | 5.07e-13 | 68 |
future brain | 5.07e-13 | 68 |
bone element | 1.99e-12 | 82 |
brain grey matter | 3.45e-12 | 34 |
gray matter | 3.45e-12 | 34 |
telencephalon | 6.60e-12 | 34 |
central nervous system | 7.00e-12 | 81 |
immune system | 1.66e-11 | 93 |
regional part of telencephalon | 2.33e-11 | 32 |
cerebral hemisphere | 4.20e-11 | 32 |
neurectoderm | 4.56e-10 | 86 |
neural plate | 5.59e-10 | 82 |
presumptive neural plate | 5.59e-10 | 82 |
regional part of cerebral cortex | 6.87e-10 | 22 |
nervous system | 1.56e-09 | 89 |
skeletal element | 3.20e-09 | 90 |
neocortex | 4.63e-09 | 20 |
cerebral cortex | 2.28e-08 | 25 |
pallium | 2.28e-08 | 25 |
skeletal system | 4.07e-08 | 100 |
pre-chordal neural plate | 2.59e-07 | 61 |