FFCP PHASE1:Hg19::chr6:127664736..127664773,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:127664736..127664773,- to FFCP PHASE1:Hg19::chr6:127664736..127664773,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55862 | |EntrezGene=55862 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21489 | |HGNC=21489 | ||
|TSSclassifier=strong | |||
|UniProt=F8W851,Q5TEG3,Q5TEF6,Q5TEF9,E9PPG7,Q9NTX5,E9PEN7,E9PR31 | |UniProt=F8W851,Q5TEG3,Q5TEF6,Q5TEF9,E9PPG7,Q9NTX5,E9PEN7,E9PR31 | ||
|association_with_transcript=0bp_to_ENST00000309620,ENST00000368290,ENST00000368291,ENST00000368293,ENST00000454859,ENST00000479525,NM_001002030,NM_001105544,NM_001105545,NM_018479,uc003qay.3,uc003qaz.3,uc010key.2,uc010kez.2_5end | |||
|cluster_id=chr6:127664736..127664773,- | |||
|description=CAGE_peak_3_at_ECHDC1_5end | |||
|id=chr6:127664736..127664773,- | |||
|ontology_enrichment_celltype=CL:0002194!1.70e-12!63;CL:0000576!1.70e-12!63;CL:0000040!1.70e-12!63;CL:0000559!1.70e-12!63;CL:0002009!1.29e-11!65;CL:0000839!3.89e-11!70;CL:0000557!6.12e-10!71;CL:0000766!4.23e-09!76;CL:0000860!1.86e-08!45;CL:0002057!2.23e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.21e-08;39!CL:0000234;3.21e-08;39!CL:0000576;1.05e-07;48!CL:0000860;2.38e-07;33!CL:0002057;2.38e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,1.27e-12,59;CL:0000576,1.27e-12,59;CL:0000040,1.27e-12,59;CL:0000559,1.27e-12,59;CL:0002009,8.49e-12,61;CL:0000839,3.32e-11,66;CL:0000473,9.42e-11,48;CL:0000234,9.42e-11,48;CL:0000557,4.72e-10,67;CL:0000766,3.02e-09,72;CL:0000860,1.95e-08,42;CL:0002057,1.95e-08,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000922!2.35e-12!612;UBERON:0002050!1.99e-10!605;UBERON:0005423!1.99e-10!605;UBERON:0000923!2.04e-10!604;UBERON:0005291!2.04e-10!604;UBERON:0006598!2.04e-10!604;UBERON:0002532!2.04e-10!604;UBERON:0000062!7.60e-10!511;UBERON:0000468!2.23e-08!659;UBERON:0002371!1.08e-07!80;UBERON:0004765!3.23e-07!101;UBERON:0001434!3.23e-07!101;UBERON:0000467!3.37e-07!625;UBERON:0000480!4.54e-07!626;UBERON:0001474!4.94e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,3.60e-11,592;UBERON:0002050,2.35e-10,564;UBERON:0000923,4.30e-10,560;UBERON:0010316,4.30e-10,560;UBERON:0005291,4.30e-10,560;UBERON:0006598,4.30e-10,560;UBERON:0010317,4.30e-10,560;UBERON:0002532,4.30e-10,560;UBERON:0011216,2.05e-09,223;UBERON:0005423,2.66e-09,581;UBERON:0002371,8.89e-08,76;UBERON:0004765,1.38e-07,90;UBERON:0001434,1.84e-07,100;UBERON:0001474,4.57e-07,82 | |||
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| ||
|short_description=p3@ECHDC1 | |||
}} | }} |
Latest revision as of 14:56, 24 September 2015
Short description: | p3@ECHDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ECHDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309620, ENST00000368290, ENST00000368291, ENST00000368293, ENST00000454859, ENST00000479525, NM_001002030, NM_001105544, NM_001105545, NM_018479, uc003qay.3, uc003qaz.3, uc010key.2, uc010kez.2_5end |
EntrezGene: | ECHDC1 |
HGNC: | 21489 |
UniProt: | F8W851Q5TEG3Q5TEF6Q5TEF9E9PPG7Q9NTX5E9PEN7E9PR31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 1.27e-12 | 59 |
monocyte | 1.27e-12 | 59 |
monoblast | 1.27e-12 | 59 |
promonocyte | 1.27e-12 | 59 |
macrophage dendritic cell progenitor | 8.49e-12 | 61 |
myeloid lineage restricted progenitor cell | 3.32e-11 | 66 |
defensive cell | 9.42e-11 | 48 |
phagocyte | 9.42e-11 | 48 |
granulocyte monocyte progenitor cell | 4.72e-10 | 67 |
myeloid leukocyte | 3.02e-09 | 72 |
classical monocyte | 1.95e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.95e-08 | 42 |
Ontology term | p-value | n |
---|---|---|
embryo | 3.60e-11 | 592 |
embryonic structure | 2.35e-10 | 564 |
germ layer | 4.30e-10 | 560 |
germ layer / neural crest | 4.30e-10 | 560 |
embryonic tissue | 4.30e-10 | 560 |
presumptive structure | 4.30e-10 | 560 |
germ layer / neural crest derived structure | 4.30e-10 | 560 |
epiblast (generic) | 4.30e-10 | 560 |
organ system subdivision | 2.05e-09 | 223 |
developing anatomical structure | 2.66e-09 | 581 |
bone marrow | 8.89e-08 | 76 |
skeletal element | 1.38e-07 | 90 |
skeletal system | 1.84e-07 | 100 |
bone element | 4.57e-07 | 82 |