FFCP PHASE1:Hg19::chr6:112575490..112575527,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:112575490..112575527,- to FFCP PHASE1:Hg19::chr6:112575490..112575527,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3910 | |EntrezGene=3910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |HGNC=6484 | ||
|TSSclassifier=strong | |||
|UniProt=E5RFQ2 | |UniProt=E5RFQ2 | ||
|association_with_transcript=159bp_to_ENST00000521398_5end | |||
|cluster_id=chr6:112575490..112575527,- | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_3_at_LAMA4_5end | |||
|id=chr6:112575490..112575527,- | |||
|ontology_enrichment_celltype=CL:0000055!2.51e-23!180;CL:0000222!2.52e-15!119;CL:0000187!5.69e-13!54;CL:0000680!8.18e-13!57;CL:0000056!8.18e-13!57;CL:0000355!8.18e-13!57;CL:0000057!9.20e-13!75;CL:0000183!1.13e-11!59;CL:0000393!4.18e-11!60;CL:0000211!4.18e-11!60;CL:0000192!1.15e-09!42;CL:0000514!1.15e-09!42;CL:0000136!1.74e-09!15;CL:0002139!2.77e-09!24;CL:0002620!4.92e-08!23;CL:0000359!1.84e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.99e-10;24!CL:0000136;8.12e-10;13!CL:0000187;1.55e-07;55!CL:0002620;1.66e-07;23!CL:0000192;2.73e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.10e-16,121;CL:0000187,2.46e-13,55;CL:0000680,1.71e-12,58;CL:0000056,1.71e-12,58;CL:0000355,1.71e-12,58;CL:0000057,1.57e-11,76;CL:0000136,1.88e-10,15;CL:0000393,2.34e-10,61;CL:0000211,2.34e-10,61;CL:0002139,3.18e-10,24;CL:0000192,1.09e-09,43;CL:0000514,1.09e-09,43;CL:0002620,1.30e-07,23;CL:0000359,5.78e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.73e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!8.53e-18!79;UBERON:0007798!8.53e-18!79;UBERON:0004872!5.97e-16!84;UBERON:0000914!8.11e-16!83;UBERON:0002329!8.11e-16!83;UBERON:0003077!8.11e-16!83;UBERON:0003059!8.11e-16!83;UBERON:0007282!8.11e-16!83;UBERON:0009618!8.11e-16!83;UBERON:0007285!8.11e-16!83;UBERON:0000055!1.35e-15!69;UBERON:0004290!4.56e-15!70;UBERON:0000475!1.35e-14!365;UBERON:0002385!4.66e-14!63;UBERON:0001015!4.66e-14!63;UBERON:0000383!4.66e-14!63;UBERON:0001981!5.71e-14!60;UBERON:0007500!5.71e-14!60;UBERON:0004537!5.71e-14!60;UBERON:0006965!5.71e-14!60;UBERON:0001009!7.24e-14!113;UBERON:0004535!1.05e-13!110;UBERON:0001134!1.74e-13!61;UBERON:0002036!1.74e-13!61;UBERON:0003082!1.74e-13!61;UBERON:0000477!1.03e-12!286;UBERON:0000486!5.98e-12!82;UBERON:0004111!9.74e-12!241;UBERON:0000490!1.21e-11!138;UBERON:0000119!1.24e-11!312;UBERON:0001637!1.78e-11!42;UBERON:0003509!1.78e-11!42;UBERON:0004572!1.78e-11!42;UBERON:0000483!3.69e-11!309;UBERON:0000468!4.09e-11!659;UBERON:0004573!4.73e-11!33;UBERON:0004571!4.73e-11!33;UBERON:0000481!9.61e-11!347;UBERON:0005256!7.04e-10!143;UBERON:0003914!1.72e-09!118;UBERON:0000467!8.93e-09!625;UBERON:0000480!1.33e-08!626;UBERON:0002100!2.34e-08!216;UBERON:0000947!5.77e-08!21;UBERON:0010191!5.77e-08!21;UBERON:0000025!6.56e-08!194;UBERON:0003102!8.99e-08!95;UBERON:0002199!6.42e-07!45;UBERON:0002416!6.42e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.60e-11;33!UBERON:0004571;1.60e-11;33!UBERON:0001637;7.19e-09;42!UBERON:0003509;7.19e-09;42!UBERON:0004572;7.19e-09;42!UBERON:0000947;2.28e-08;21!UBERON:0010191;2.28e-08;21!UBERON:0000055;2.52e-08;65!UBERON:0002385;6.95e-08;31!UBERON:0001015;6.95e-08;31!UBERON:0000383;6.95e-08;31!UBERON:0002049;4.87e-07;75!UBERON:0007798;4.87e-07;75!UBERON:0007500;7.78e-07;56!UBERON:0001981;7.78e-07;56!UBERON:0004537;7.78e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,3.58e-17,78;UBERON:0007798,3.58e-17,78;UBERON:0000055,3.48e-15,68;UBERON:0004872,5.79e-15,83;UBERON:0004535,3.46e-14,109;UBERON:0001009,5.04e-14,112;UBERON:0007524,1.41e-13,73;UBERON:0002329,1.44e-13,71;UBERON:0003059,1.44e-13,71;UBERON:0007282,1.44e-13,71;UBERON:0004290,1.44e-13,71;UBERON:0009618,1.44e-13,71;UBERON:0007500,1.47e-13,59;UBERON:0001981,1.47e-13,59;UBERON:0004537,1.47e-13,59;UBERON:0006965,1.47e-13,59;UBERON:0002385,1.73e-13,64;UBERON:0001015,1.73e-13,64;UBERON:0000383,1.73e-13,64;UBERON:0003077,4.29e-13,72;UBERON:0007285,4.29e-13,72;UBERON:0001134,7.23e-13,62;UBERON:0002036,7.23e-13,62;UBERON:0003082,7.23e-13,62;UBERON:0007503,4.40e-12,78;UBERON:0004573,6.65e-12,33;UBERON:0004571,6.65e-12,33;UBERON:0000490,2.84e-11,148;UBERON:0001637,4.07e-11,42;UBERON:0003509,4.07e-11,42;UBERON:0004572,4.07e-11,42;UBERON:0000486,4.77e-11,83;UBERON:0005256,1.23e-09,122;UBERON:0003104,4.38e-09,160;UBERON:0009142,4.38e-09,160;UBERON:0004111,6.31e-09,240;UBERON:0003914,9.47e-09,117;UBERON:0000947,2.69e-08,21;UBERON:0010191,2.69e-08,21;UBERON:0000119,8.72e-08,309;UBERON:0000483,2.21e-07,306;UBERON:0003102,2.94e-07,99;UBERON:0002199,3.17e-07,46;UBERON:0002416,3.17e-07,46 | |||
|phase1_expression=6.35874327446948,11.5614282901131,16.9145284915165,9.00659685178174,15.6436383049551,3.48935409640147,7.59899634504932,11.370957721683,45.7074849349717,0.491467873003018,0,0,0,6.80714941280256,7.29074226601415,10.0848771967766,6.02694528023977,4.38186054232424,7.80692478064811,0.984968464614303,0.612002073732759,3.44800193625897,2.0036519099174,3.01123735160345,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.694892620815,1.34140171940727,3.06870148424473,1.80719576192283,8.52274448081012,8.25625158076695,6.36228757640879,5.83961844363163,1.32348744029695,0.886917589850256,1.40535657109002,2.81605012320082,0,0,0,0,0,0,0,0,3.57772333260069,7.74211135595512,1.04142150482278,7.91431118693613,4.61449379830897,5.77747888074142,3.13492449805216,11.3703374034505,9.24992282985447,13.3888245105868,7.65375702507379,7.60272105718513,9.03029612928227,5.8826092855339,8.91156142669936,4.73288559905623,2.46982309888787,2.25222960966644,7.66583187329416,2.84779697870439,2.5648244150257,0,0,0,1.49091585508596,5.82500353657067,30.3217024062271,65.6855861514783,6.02936249737207,0.560677600142307,1.06748995729705,1.2333377420858,14.9381296991888,2.96363478553314,2.45192854670188,6.35701196108712,8.06646294271999,0.937285727335186,6.24320153660641,4.56377457235559,7.02408798593465,0.822041490506354,0.647491777472526,0.280901613404497,4.69554593886255,0.368502951935304,6.61284999524899,7.12801714369232,14.3414818981563,0,0.718618141816238,0.673344455816265,1.87677779807946,6.64953877162039,7.02364193409341,3.98434134538726,10.065949946742,0.453728732640084,12.3778848625315,14.9490172172997,16.9545520927649,11.7035527472917,7.83199222212136,8.75977836155139,8.37525853492154,9.78902726999344,5.84622030967192,13.8838575834263,24.3932231402093,16.0029596250624,8.16522062788213,2.92181084860157,1.52604533079439,0,0,0,0.121973706129595,0,0.232387885739037,0.310983165046111,0,0,12.5159625863853,8.36213219650751,2.76269842704961,18.5747171212792,7.94067429836544,0,0,0,0,0,0,0,0,0,2.21446636387394,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,3.94605963686609,0,0,0,0,0,0,7.21656710126366,0.927443239800615,4.46153038096122,12.5598809552134,8.7967247389556,11.9860115907797,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.25248486685276,0.380987365753014,0,2.34434894420094,3.4214489204541,0.205654985406647,0.600686115687835,0.571652865261156,2.91540819297938,2.1798003441664,5.7203862940341,3.10252117818667,10.7296933755565,4.22651376278,3.19125739901845,1.04007436911366,0.771622122786426,0,1.5985330740966,8.14974563851441,0.542621605391443,0,3.58309802723109,6.04166312862328,2.37585561880029,7.53598442648965,11.3299349618038,7.29802835629016,0,0,0,2.39624855491583,11.4861935834114,1.42636905040718,0.289562613335158,3.90405012845728,0.716243852959582,0,0,0,0,9.40150109623115,1.30139853857622,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,17.2995003323987,6.5022167737758,8.13795071099207,8.94274704582471,1.78428988797162,4.25796520591624,6.44277782459923,3.61135319673263,0,2.0694614258501,1.32845119707087,0.737476674166813,12.4243568689358,1.76221041716467,0.686286847621712,0,0,0,0,0,0.604780586659361,4.71404834855676,4.60385919864187,2.80660094433074,9.99485364194467,4.60536524160033,4.02134802859019,0,2.7757744884478,2.84098760501003,5.4203922969114,6.75030757938707,2.78904908303902,0,0,0,8.15182581968708,5.28064387219479,23.4712702777369,0,0.0770153371044148,0,0,0.316654886678627,0,1.36074964221213,1.0795795805107,4.62681758070868,0,0,0,0,0,0,0,0.769350375349168,0.656029291399411,0.325378394664303,1.854738209659,2.19766715564024,1.81520899825294,0,0,12.8547143875328,6.86362099874066,5.23765298189791,4.75861391651002,1.51620229732984,11.0642852214322,10.7312353496529,3.49429172406014,10.9509403845487,0.165284915360978,0,0,0,0.464845549297286,20.7776148908222,3.485186350803,4.62050370264133,3.19383618190213,5.21959795245044,11.1194531462352,2.43312307461385,4.83805880167568,5.37845022021834,12.7722229928963,1.27948895655667,42.793898803392,11.7735201732597,3.13979456079692,10.9722199125822,7.13796277313742,3.65218447271628,3.63928466831969,0,6.7401352998237,2.43816869544795,12.9168149504581,4.22600587027022,5.59649636772742,10.6054073965285,5.65040583101214,4.41092274836899,13.9322184800656,8.33056681982149,1.73632660280006,12.462000288886,1.82619339266434,0.6196469961995,0.845086807596724,0.286822704408103,0,1.78335525740625,0.354761064070598,10.7664894001809,8.56166721695745,0,3.14941248220485,0,0,0,2.63602642174982,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.76493350141038,0,0,0,0,0,0,1.9882952955326,3.93874365949436,4.34103949589333,0,0,4.18420775327246,6.90709788827869,0.251932747854276,1.02268682502155,0,1.86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| ||
|short_description=p3@LAMA4 | |||
}} | }} |
Latest revision as of 22:11, 19 September 2015
Short description: | p3@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 159bp_to_ENST00000521398_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.10e-16 | 121 |
muscle cell | 2.46e-13 | 55 |
muscle precursor cell | 1.71e-12 | 58 |
myoblast | 1.71e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.71e-12 | 58 |
fibroblast | 1.57e-11 | 76 |
fat cell | 1.88e-10 | 15 |
electrically responsive cell | 2.34e-10 | 61 |
electrically active cell | 2.34e-10 | 61 |
endothelial cell of vascular tree | 3.18e-10 | 24 |
smooth muscle cell | 1.09e-09 | 43 |
smooth muscle myoblast | 1.09e-09 | 43 |
skin fibroblast | 1.30e-07 | 23 |
vascular associated smooth muscle cell | 5.78e-07 | 32 |