FFCP PHASE1:Hg19::chr5:60600469..60600488,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:60600469..60600488,- to FFCP PHASE1:Hg19::chr5:60600469..60600488,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:60600469..60600488,- | |||
|coexpression_cluster_id=C4510 | |||
|description=CAGE_peak_at_chr5:60600469..60600488,- | |||
|id=chr5:60600469..60600488,- | |||
|ontology_enrichment_celltype=CL:0000359!6.52e-15!32;CL:0000192!1.86e-13!42;CL:0000514!1.86e-13!42;CL:0000680!9.62e-13!57;CL:0000056!9.62e-13!57;CL:0000355!9.62e-13!57;CL:0000220!2.15e-12!246;CL:0000187!3.29e-12!54;CL:0002321!4.77e-12!248;CL:0000055!7.79e-12!180;CL:0000183!3.81e-10!59;CL:0000393!8.82e-10!60;CL:0000211!8.82e-10!60;CL:0002539!3.62e-09!10;CL:0002076!6.09e-09!43;CL:0000222!7.76e-08!119;CL:0000057!1.84e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002539;3.54e-12;10!CL:0000359;1.66e-11;32!CL:1000306;1.58e-09;4!CL:0002547;1.58e-09;4!CL:0000192;1.51e-07;43!CL:0002166;1.67e-07;3!CL:0002621;4.07e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,1.09e-12,10;CL:0000359,9.22e-12,32;CL:1000306,1.53e-09,4;CL:0002547,1.53e-09,4;CL:0002321,1.78e-09,250;CL:0000192,6.25e-09,43;CL:0000514,6.25e-09,43;CL:0002166,9.17e-08,3;CL:0000680,2.09e-07,58;CL:0000056,2.09e-07,58;CL:0000355,2.09e-07,58;CL:0000222,3.22e-07,121;CL:0000187,4.23e-07,55;CL:0002621,7.88e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;1.51e-07;43 | |||
|ontology_enrichment_disease=DOID:1749!6.15e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.15e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.29e-10,14;DOID:14566,1.53e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0001637!5.23e-15!42;UBERON:0003509!5.23e-15!42;UBERON:0004572!5.23e-15!42;UBERON:0000914!1.02e-14!83;UBERON:0002329!1.02e-14!83;UBERON:0003077!1.02e-14!83;UBERON:0003059!1.02e-14!83;UBERON:0007282!1.02e-14!83;UBERON:0009618!1.02e-14!83;UBERON:0007285!1.02e-14!83;UBERON:0004573!4.39e-14!33;UBERON:0004571!4.39e-14!33;UBERON:0005256!3.74e-12!143;UBERON:0000486!3.22e-11!82;UBERON:0001134!4.65e-11!61;UBERON:0002036!4.65e-11!61;UBERON:0003082!4.65e-11!61;UBERON:0000490!6.40e-11!138;UBERON:0004290!1.26e-10!70;UBERON:0003104!1.74e-10!238;UBERON:0009142!1.74e-10!238;UBERON:0001981!2.29e-10!60;UBERON:0007500!2.29e-10!60;UBERON:0004537!2.29e-10!60;UBERON:0006965!2.29e-10!60;UBERON:0002385!2.60e-10!63;UBERON:0001015!2.60e-10!63;UBERON:0000383!2.60e-10!63;UBERON:0000947!3.29e-10!21;UBERON:0010191!3.29e-10!21;UBERON:0002100!7.35e-10!216;UBERON:0000481!8.18e-10!347;UBERON:0004119!3.23e-09!169;UBERON:0000925!3.23e-09!169;UBERON:0006595!3.23e-09!169;UBERON:0004237!3.62e-09!10;UBERON:0004695!3.62e-09!10;UBERON:0002111!3.62e-09!10;UBERON:0004178!3.62e-09!10;UBERON:0004872!4.28e-09!84;UBERON:0000475!3.14e-08!365;UBERON:0000165!1.03e-07!28;UBERON:0000930!1.03e-07!28;UBERON:0000055!1.58e-07!69;UBERON:0003914!1.95e-07!118;UBERON:0004111!2.44e-07!241;UBERON:0001007!2.55e-07!155;UBERON:0001555!2.55e-07!155;UBERON:0007026!2.55e-07!155;UBERON:0005911!2.98e-07!82;UBERON:0001004!3.12e-07!72;UBERON:0000477!4.38e-07!286;UBERON:0000161!8.63e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.62e-18;33!UBERON:0004571;1.62e-18;33!UBERON:0000947;1.19e-16;21!UBERON:0010191;1.19e-16;21!UBERON:0001637;2.56e-15;42!UBERON:0003509;2.56e-15;42!UBERON:0004572;2.56e-15;42!UBERON:0004237;3.54e-12;10!UBERON:0004695;3.54e-12;10!UBERON:0002111;3.54e-12;10!UBERON:0004178;3.54e-12;10!UBERON:0004797;1.58e-09;4!UBERON:0000415;1.58e-09;4!UBERON:0007240;1.58e-09;4!UBERON:0005742;1.58e-09;4!UBERON:0005734;1.58e-09;4!UBERON:0004664;1.58e-09;4!UBERON:0004663;1.58e-09;4!UBERON:0007500;2.31e-09;56!UBERON:0001981;2.31e-09;56!UBERON:0004537;2.31e-09;56!UBERON:0001135;1.22e-07;15!UBERON:0001949;4.07e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,2.15e-21,33;UBERON:0004571,2.15e-21,33;UBERON:0001637,2.38e-19,42;UBERON:0003509,2.38e-19,42;UBERON:0004572,2.38e-19,42;UBERON:0000947,6.42e-17,21;UBERON:0010191,6.42e-17,21;UBERON:0007500,2.53e-13,59;UBERON:0001981,2.53e-13,59;UBERON:0004537,2.53e-13,59;UBERON:0006965,2.53e-13,59;UBERON:0004237,1.09e-12,10;UBERON:0004695,1.09e-12,10;UBERON:0002111,1.09e-12,10;UBERON:0004178,1.09e-12,10;UBERON:0000055,9.37e-11,68;UBERON:0004872,1.01e-10,83;UBERON:0000415,1.53e-09,4;UBERON:0007240,1.53e-09,4;UBERON:0005742,1.53e-09,4;UBERON:0005734,1.53e-09,4;UBERON:0004664,1.53e-09,4;UBERON:0004663,1.53e-09,4;UBERON:0003914,2.37e-09,117;UBERON:0002049,1.24e-08,78;UBERON:0007798,1.24e-08,78;UBERON:0001135,5.85e-08,15;UBERON:0003134,7.22e-07,37;UBERON:0000474,7.22e-07,37;UBERON:0001949,7.88e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0.495065411840187,0.331397375727916,0.672325146451775,1.80808358407193,1.46062018077475,1.46379839637152,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,1.39133685156694,0,1.04142150482278,0,0,0,2.29894463190492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8994576749687,3.44263870114369,5.73673241497627,1.06400514659507,0,0,0.24666754841716,0,0.269421344139376,0.490385709340376,0,0,0,0.936480230490962,0.570471821544449,0.298897361103602,0,0,0.140450806702248,0.408308342509787,0.859840221182376,0.723280468230358,0,0.247266929278557,0,0,0.505008341862199,0.500474079487857,0.277064115484183,1.75591048352335,0,0.150238058906597,0.113432183160021,0.717558542755448,0,0,0.600182192168805,0.206105058476878,0.515281080091258,0.18611685633159,0.843881661206331,0.487185025805993,0,0,0,0,0.403008392910561,0.508681776931463,1.35282597214308,1.09098448236334,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,2.18376766658517,2.83550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0.65147236858747,0,0,0,0,0.399891964728228,0,0,0,0,0,1.42636905040718,0.579125226670317,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.415941723061614,0.178428988797162,0.473107245101804,0.937131319941706,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0,0.153461973288062,0.280660094433074,0,0,0,0,0,0.532685175939381,1.14978018419333,1.03850885836724,0.813472649219715,0,0.200506470303285,0.828728900423067,0.114814448164607,0,0.393373244878272,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,0,0,0.154048617114644,0,0.137836572484531,0.214840489736547,0.145016693914229,0.170453254832202,0,1.15699440752685,1.92190067365106,4.33883222481586,0.50578890427775,1.39453664789186,1.88887408098384,2.0911118104818,1.54016790088044,1.59691809095107,0.869932992075073,0.55597265731176,0.572499546967965,0,0.316379424718726,0.953150969619124,0.255897791311334,0.42793898803392,0,1.56989728039846,0,0,0.235624804691373,1.41527737101321,0,1.68503382495592,0,2.68084838594413,3.16950440270266,0,0.141405431953713,0,0.551365343546124,0,2.63070531152258,0,0.655894752046633,0.608731130888112,1.239293992399,0.563391205064483,0.573645408816206,0.785992328104969,0.35667105148125,1.06428319221179,0,0,0,0,0.673554789078584,0.670302275535787,0,0.188287601553558,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0.71623345421307,0,0,0,0.140669416410513,3.11664374064136,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0.718946809178615,2.50629644545853,0,0,0,6.66821940867821,0,0,0,0,0,0,0.227586896570999,1.01701460117107,0,0,0,0,0,0,0,0,0,0.219385397153973,0,1.53366118706464,0.0769502585037971,0.113942055847001,0,0,0,0.638002319463839,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.326465616318295,0.282706142867882,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0.468528891450678,0,1.36965233252463,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0,1.19472429772959,0,1.66409607615766,0,1.46988596121566,1.30588809870604,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0.822251547880505,0,0,0.195551382734803,2.32460578729448,0.213452994739353,0.999048047910651,0,0,0,0.14405479798815,0.372757606696298,1.88555227693436,2.44627570932505,2.510468311496,0.305994652908965,0,0,0,0,3.86788897277961,0,0,0,0,0.399358000997982,0,0,0,1.80149941771202,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0.528001682597033,1.25501137532991,0.767660789277781,0,0,0,1.08599920350743,2.5926644736038,0.979762080328227,0,0,1.70388021785422,0,0,0,0,0,0.855434189421647,0.704815022316672,0.533937062838473,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,1.19403842309499,0.233713309847224,0.554805861502613,0,0,0,5.03448150473232,0.604923695052956,0.310874401165561,1.47855149989634,1.91156120596443,0,0.155262956876259,1.65882483136342,0.53168342911599,0.521745061811734,2.10360652596106,1.14241563650639,3.25496586563729,0.727394636810238,0.859284456339908,1.85613503951397,0,10.0006941165788,0,0,0,1.34833881285112,0,0.260994291965212,0.226705925512272,0.694567422971502,1.71315693154527,0,0.308801447160972,1.09642024789354,3.7104720648635,0.964570191354574,2.70307905044916,0,0.690860683462397,2.12701969324168,0.138258436151731,0,0,0,0,0.491545817507439,1.90180911022764,0,0,0,2.27006381426734,1.10463570151104,0.279759015438889,0.6220772600329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| ||
|short_description=p@chr5:60600469..60600488,- | |||
}} | }} |
Latest revision as of 15:37, 30 July 2015
Short description: | p@chr5:60600469..60600488, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:60600469..60600488, - |
Coexpression cluster: | C4510_bone_mesenchymal_Small_squamous_Fibroblast_thyroid_glioblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 1.09e-12 | 10 |
vascular associated smooth muscle cell | 9.22e-12 | 32 |
fibroblast of tunica adventitia of artery | 1.53e-09 | 4 |
fibroblast of the aortic adventitia | 1.53e-09 | 4 |
embryonic cell | 1.78e-09 | 250 |
smooth muscle cell | 6.25e-09 | 43 |
smooth muscle myoblast | 6.25e-09 | 43 |
epithelial cell of Malassez | 9.17e-08 | 3 |
muscle precursor cell | 2.09e-07 | 58 |
myoblast | 2.09e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.09e-07 | 58 |
mesodermal cell | 3.22e-07 | 121 |
muscle cell | 4.23e-07 | 55 |
gingival epithelial cell | 7.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 2.15e-21 | 33 |
systemic arterial system | 2.15e-21 | 33 |
artery | 2.38e-19 | 42 |
arterial blood vessel | 2.38e-19 | 42 |
arterial system | 2.38e-19 | 42 |
aorta | 6.42e-17 | 21 |
aortic system | 6.42e-17 | 21 |
epithelial tube open at both ends | 2.53e-13 | 59 |
blood vessel | 2.53e-13 | 59 |
blood vasculature | 2.53e-13 | 59 |
vascular cord | 2.53e-13 | 59 |
blood vessel smooth muscle | 1.09e-12 | 10 |
arterial system smooth muscle | 1.09e-12 | 10 |
artery smooth muscle tissue | 1.09e-12 | 10 |
aorta smooth muscle tissue | 1.09e-12 | 10 |
vessel | 9.37e-11 | 68 |
splanchnic layer of lateral plate mesoderm | 1.01e-10 | 83 |
artery wall | 1.53e-09 | 4 |
tunica adventitia of artery | 1.53e-09 | 4 |
adventitia | 1.53e-09 | 4 |
tunica adventitia of blood vessel | 1.53e-09 | 4 |
aorta tunica adventitia | 1.53e-09 | 4 |
aorta wall | 1.53e-09 | 4 |
epithelial tube | 2.37e-09 | 117 |
vasculature | 1.24e-08 | 78 |
vascular system | 1.24e-08 | 78 |
smooth muscle tissue | 5.85e-08 | 15 |
female reproductive organ | 7.22e-07 | 37 |
female reproductive system | 7.22e-07 | 37 |
gingival epithelium | 7.88e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.29e-10 | 14 |
disease of cellular proliferation | 1.53e-07 | 239 |