FFCP PHASE1:Hg19::chr5:34656331..34656351,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:34656331..34656351,+ to FFCP PHASE1:Hg19::chr5:34656331..34656351,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26064 | |EntrezGene=26064 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14873 | |HGNC=14873 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P0K7 | |UniProt=Q9P0K7 | ||
|association_with_transcript=0bp_to_ENST00000265109_5end | |||
|cluster_id=chr5:34656331..34656351,+ | |||
|description=CAGE_peak_5_at_RAI14_5end | |||
|id=chr5:34656331..34656351,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.34e-22!180;CL:0002321!2.05e-15!248;CL:0000220!9.55e-15!246;CL:0000066!1.66e-10!254;CL:0000057!1.03e-08!75;CL:0000680!1.23e-07!57;CL:0000056!1.23e-07!57;CL:0000355!1.23e-07!57;CL:0000393!2.23e-07!60;CL:0000211!2.23e-07!60;CL:0000187!2.87e-07!54;CL:0000548!3.53e-07!679;CL:0000004!3.53e-07!679;CL:0000255!3.53e-07!679;CL:0000221!5.78e-07!71 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.71e-13,250;CL:0000057,2.30e-08,76;CL:0000221,8.34e-08,72;CL:0000680,9.64e-08,58;CL:0000056,9.64e-08,58;CL:0000355,9.64e-08,58;CL:0000393,1.14e-07,61;CL:0000211,1.14e-07,61;CL:0000187,1.48e-07,55;CL:0000192,3.01e-07,43;CL:0000514,3.01e-07,43;CL:0000359,8.86e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!3.92e-09!29;DOID:120!6.11e-09!27;DOID:2394!3.79e-07!14;DOID:0050687!7.11e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:193;1.77e-08;29!DOID:120;1.99e-08;27!DOID:2394;5.51e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,5.43e-09,29;DOID:120,9.78e-09,27;DOID:2394,3.97e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!2.29e-12!365;UBERON:0003102!1.42e-11!95;UBERON:0003104!9.46e-11!238;UBERON:0009142!9.46e-11!238;UBERON:0005256!1.54e-10!143;UBERON:0002100!4.75e-10!216;UBERON:0000481!2.25e-09!347;UBERON:0000914!4.14e-09!83;UBERON:0002329!4.14e-09!83;UBERON:0003077!4.14e-09!83;UBERON:0003059!4.14e-09!83;UBERON:0007282!4.14e-09!83;UBERON:0009618!4.14e-09!83;UBERON:0007285!4.14e-09!83;UBERON:0005156!1.43e-08!59;UBERON:0000990!1.43e-08!59;UBERON:0000468!2.09e-08!659;UBERON:0000486!4.17e-07!82;UBERON:0004290!6.12e-07!70;UBERON:0000467!9.24e-07!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.72e-13,99;UBERON:0000486,3.92e-08,83;UBERON:0005256,4.80e-08,122;UBERON:0003104,5.29e-08,160;UBERON:0009142,5.29e-08,160;UBERON:0002329,1.33e-07,71;UBERON:0003059,1.33e-07,71;UBERON:0007282,1.33e-07,71;UBERON:0004290,1.33e-07,71;UBERON:0009618,1.33e-07,71;UBERON:0007524,2.70e-07,73;UBERON:0003077,2.73e-07,72;UBERON:0007285,2.73e-07,72;UBERON:0005156,2.80e-07,59;UBERON:0000990,2.80e-07,59;UBERON:0002100,7.99e-07,199;UBERON:0007503,9.99e-07,78 | |||
|phase1_expression=1.45342703416445,1.49870366723688,1.26858963686374,0,0.446961094427288,1.74467704820074,2.53299878168311,3.15859936713415,0.783556884599516,2.94880723801811,0.697801167972428,0.436882744260345,0.263766978228454,0.866364470720326,1.32558950291166,4.03395087871065,2.41077811209591,2.92124036154949,2.92759679274304,0.861847406537515,0.612002073732759,0.626909442956176,1.71741592278634,1.36874425072884,3.13856598987007,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0.485168122375632,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0.320929027076094,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.9408389224012,1.0843174571537,1.00267582127178,1.30361867064741,0.795285947051099,1.45990461090791,2.6469748805939,3.99112915432615,4.12823492757692,0.458426764241994,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,1.04142150482278,1.69592382577203,0.419499436209906,0.550236083880135,0.835979866147242,1.03366703667732,1.42306505074684,1.67360306382335,0,0,0.488124115096339,1.10298924103761,0,1.07159673940896,1.57170560838319,2.36484109014977,0,1.89853131913626,1.46561395144326,0,0,0,0,3.54565432660823,1.32409180813219,0.286836620748814,0.709336764396714,1.12135520028461,5.33744978648525,2.4666754841716,0.622422070799533,1.34710672069688,1.47115712802113,0.151357427644931,0.576175924479999,0.70296429550139,4.99456122928513,2.2818872861778,3.88566569434683,1.76151747965647,1.45685649931318,1.26405726032024,2.85815839756851,1.71968044236475,2.9964476540972,4.75201142912821,8.15980866619238,0.910161361938026,0,1.17835279767846,1.87677779807946,5.26421819419948,4.38977620880838,3.0648779579902,13.8219014194069,2.04177929688038,0.89694817844431,2.77624605464138,2.7551147150743,0,1.75189299705346,0.515281080091258,2.04728541964749,1.35021065793013,3.11798416515836,0.252433774244115,2.20919756741518,3.23292113637624,0.710019185033229,2.11579406278045,2.20428770003634,2.51239109112286,3.00020732649918,2.58124135850103,4.87894824518382,3.18071443971565,1.62671520017326,3.21349270547648,3.28017106138317,1.82488679537915,1.56449532329816,1.92972281457866,0,2.3218396401599,3.60939740834793,0.828147600278907,0.674338760312407,0.723033089650446,0.992645754591546,0.871517776369625,0.474541238222193,0.539325232640658,1.17732879075208,0.38474715694639,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0.614942192715568,4.11762744716461,1.42675371031213,0,1.80952150340936,1.48141512253647,1.3032332212413,1.03993478527958,5.77325368101093,3.13012093432707,4.46153038096122,1.73239737313289,0.925971025153221,2.66355813128438,0,0,0,0.936017060556951,0.743155811443641,2.81201501960331,2.18376766658517,3.1190521393325,1.34337784054272,2.3250715081117,0.766765358330422,0.985326475791887,0,0.207328115540772,1.44119953416961,0.12624243342638,2.03193261734941,1.14596527667483,1.17217447210047,0,3.39330725920968,2.40274446275134,1.42913216315289,0.560655421726804,0.43596006883328,0.8800594298514,2.84397774667111,0,0.845302752556,3.72313363218819,3.12022310734098,0.771622122786426,0,1.0656887160644,2.14466990487221,0.542621605391443,2.46972101034231,1.95441710576241,3.19852753868291,1.58390374586686,2.71295439353627,4.35766729300147,3.79897366491817,0,0,0,2.39624855491583,3.44585807502342,5.70547620162874,2.60606352001643,2.67119219315498,0.716243852959582,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,0.670065061337395,0,0,0,0,0.736148950314839,0,3.25518028439683,2.07970861530807,1.78428988797162,2.52323864054295,3.27995961979597,3.61135319673263,4.5481500811197,4.1389228517002,3.32112799267718,2.58116835958384,3.5622281931914,0.195801157462741,0,0,0,0,0.303127571446259,0,0.604780586659361,2.48107807818777,2.30192959932094,4.77122160536225,1.92208723883551,3.07024349440022,5.46903331888265,1.48418066444991,2.00472601943452,3.55123450626254,1.72467027628999,1.55776328755086,3.37010097533882,1.81289174387433,3.00759705454927,2.76242966807689,1.60740227430449,1.27463817604702,2.36023946926963,1.35359883872224,3.15762882128101,1.56869953835371,1.46139224653261,3.0609972378934,0,0.680374821106063,2.59099099322567,0,1.35473218771926,1.00337954770971,0.764628819135115,0.831076008928724,0.895499018888713,0,0,4.35965212697862,0.984043937099117,0.650756789328606,3.81251743096572,0.732555718546747,0.907604499126468,2.29706215198469,3.25030123018261,11.2478750890912,0.96670718292122,2.00263202249038,1.22802939780904,3.03240459465967,2.0409846524972,1.45016693914229,2.47157219506693,0.890320356467374,1.98341898433174,2.49847087574638,2.4246415373971,5.76599350876635,3.71876439437829,1.25924938732256,2.0911118104818,0.616067160352178,3.19383618190213,5.21959795245044,2.03856641014312,3.00562262158182,1.116475108079,3.16379424718726,2.85945290885737,0,2.56763392820352,1.90921948755562,0,2.87795932133304,1.64722217841633,2.35624804691373,2.02182481573316,1.58510321173008,1.6850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| ||
|short_description=p5@RAI14 | |||
}} | }} |
Latest revision as of 17:29, 17 September 2015
Short description: | p5@RAI14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RAI14_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265109_5end |
EntrezGene: | RAI14 |
HGNC: | 14873 |
UniProt: | Q9P0K7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.71e-13 | 250 |
fibroblast | 2.30e-08 | 76 |
ectodermal cell | 8.34e-08 | 72 |
muscle precursor cell | 9.64e-08 | 58 |
myoblast | 9.64e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.64e-08 | 58 |
electrically responsive cell | 1.14e-07 | 61 |
electrically active cell | 1.14e-07 | 61 |
muscle cell | 1.48e-07 | 55 |
smooth muscle cell | 3.01e-07 | 43 |
smooth muscle myoblast | 3.01e-07 | 43 |
vascular associated smooth muscle cell | 8.86e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.72e-13 | 99 |
multilaminar epithelium | 3.92e-08 | 83 |
trunk mesenchyme | 4.80e-08 | 122 |
mesenchyme | 5.29e-08 | 160 |
entire embryonic mesenchyme | 5.29e-08 | 160 |
somite | 1.33e-07 | 71 |
presomitic mesoderm | 1.33e-07 | 71 |
presumptive segmental plate | 1.33e-07 | 71 |
dermomyotome | 1.33e-07 | 71 |
trunk paraxial mesoderm | 1.33e-07 | 71 |
dense mesenchyme tissue | 2.70e-07 | 73 |
paraxial mesoderm | 2.73e-07 | 72 |
presumptive paraxial mesoderm | 2.73e-07 | 72 |
reproductive structure | 2.80e-07 | 59 |
reproductive system | 2.80e-07 | 59 |
trunk | 7.99e-07 | 199 |
epithelial vesicle | 9.99e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 5.43e-09 | 29 |
female reproductive organ cancer | 9.78e-09 | 27 |
ovarian cancer | 3.97e-08 | 14 |