FFCP PHASE1:Hg19::chr5:32711419..32711435,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:32711419..32711435,+ to FFCP PHASE1:Hg19::chr5:32711419..32711435,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4883 | |EntrezGene=4883 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7945 | |HGNC=7945 | ||
|TSSclassifier=strong | |||
|UniProt=P17342,Q60I31,A8K4A5 | |UniProt=P17342,Q60I31,A8K4A5 | ||
|association_with_transcript=-2bp_to_NM_000908,NM_001204375_5end | |||
|cluster_id=chr5:32711419..32711435,+ | |||
|coexpression_cluster_id=C1959 | |||
|description=CAGE_peak_1_at_NPR3_5end | |||
|id=chr5:32711419..32711435,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.60e-20!180;CL:0000680!3.40e-13!57;CL:0000056!3.40e-13!57;CL:0000355!3.40e-13!57;CL:0000057!7.63e-13!75;CL:0000187!1.30e-11!54;CL:0000393!1.09e-09!60;CL:0000211!1.09e-09!60;CL:0000192!1.11e-09!42;CL:0000514!1.11e-09!42;CL:0000183!2.00e-09!59;CL:0000359!2.03e-07!32;CL:0002620!2.24e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.62e-10;32!CL:0000192;2.45e-09;43!CL:0002620;3.79e-08;23!CL:0000187;4.22e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,7.55e-16,58;CL:0000056,7.55e-16,58;CL:0000355,7.55e-16,58;CL:0000187,7.27e-14,55;CL:0000393,4.62e-12,61;CL:0000211,4.62e-12,61;CL:0000192,1.28e-11,43;CL:0000514,1.28e-11,43;CL:0000057,6.01e-11,76;CL:0000359,4.24e-10,32;CL:0002620,3.23e-08,23;CL:0000136,2.64e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;2.45e-09;43!CL:0000355;5.32e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!1.67e-14!63;UBERON:0001015!1.67e-14!63;UBERON:0000383!1.67e-14!63;UBERON:0000914!2.53e-14!83;UBERON:0002329!2.53e-14!83;UBERON:0003077!2.53e-14!83;UBERON:0003059!2.53e-14!83;UBERON:0007282!2.53e-14!83;UBERON:0009618!2.53e-14!83;UBERON:0007285!2.53e-14!83;UBERON:0001134!4.31e-14!61;UBERON:0002036!4.31e-14!61;UBERON:0003082!4.31e-14!61;UBERON:0004290!1.32e-12!70;UBERON:0000475!1.23e-10!365;UBERON:0000481!1.78e-10!347;UBERON:0000486!7.33e-10!82;UBERON:0002100!4.30e-09!216;UBERON:0005256!5.97e-09!143;UBERON:0003104!3.15e-07!238;UBERON:0009142!3.15e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.71e-08;33!UBERON:0004571;3.71e-08;33!UBERON:0001134;3.04e-07;16!UBERON:0002036;3.04e-07;16!UBERON:0004457;3.07e-07;9!UBERON:0000042;3.07e-07;9!UBERON:0002385;3.39e-07;31!UBERON:0001015;3.39e-07;31!UBERON:0000383;3.39e-07;31!UBERON:0004905;5.02e-07;8!UBERON:0000982;5.02e-07;8!UBERON:0004770;5.02e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.99e-17,62;UBERON:0002036,3.99e-17,62;UBERON:0003082,3.99e-17,62;UBERON:0002385,3.89e-16,64;UBERON:0001015,3.89e-16,64;UBERON:0000383,3.89e-16,64;UBERON:0007524,4.87e-15,73;UBERON:0002329,1.10e-14,71;UBERON:0003059,1.10e-14,71;UBERON:0007282,1.10e-14,71;UBERON:0004290,1.10e-14,71;UBERON:0009618,1.10e-14,71;UBERON:0003077,2.79e-14,72;UBERON:0007285,2.79e-14,72;UBERON:0000486,2.35e-12,83;UBERON:0007503,4.21e-12,78;UBERON:0003104,3.30e-10,160;UBERON:0009142,3.30e-10,160;UBERON:0004573,2.70e-09,33;UBERON:0004571,2.70e-09,33;UBERON:0005256,1.48e-08,122;UBERON:0001637,6.43e-08,42;UBERON:0003509,6.43e-08,42;UBERON:0004572,6.43e-08,42;UBERON:0002100,1.64e-07,199;UBERON:0004905,5.05e-07,8;UBERON:0000982,5.05e-07,8;UBERON:0004770,5.05e-07,8 | |||
|phase1_expression=40.8776353358752,35.5406869659032,22.2707958471634,27.0197905553452,25.4767823823554,34.0212024399144,0,0,0,0,0,0,0,51.9818682432196,38.4420955844382,0,0,0,0,0,0,0,0.85870796139317,0,1.88313959392204,0,0,0,0.393364276848904,0,0,0,0,0,0,0,11.450417134059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.28685314316103,2.24203425192614,3.68737718685108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.18320395798594,32.8909628669955,82.2194173442859,40.5570253090306,0,3.40644409211845,0.756278537312543,1.77383517970051,1.31752178539689,6.67993285038334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,6.46063537203914,8.48424428152684,3.97227542439656,63.9645664269855,21.6347713140998,7.28880880184999,1.06748995729705,24.4200872932988,0.622422070799533,0.269421344139376,0.490385709340376,2.8757911252537,0.576175924479999,0.234321431833797,1.87296046098192,0,0.747243402759005,0,0,0.280901613404497,1.02077085627447,0,1.44656093646072,2.37600571456411,5.93440630268536,0,0,0,0.250237039743928,0.554128230968366,0.877955241761676,15.017901994152,18.0285670687916,0,11.4809366840872,5.12537733164562,12.7159140695737,23.107014398499,14.324301564143,11.0785432219621,7.81690796592677,115.780563917509,72.6880058502542,4.54380793639406,7.82424138459544,29.257936284205,59.2866019502746,29.9233731736092,1.69560592310488,0,0,0,0,0,0.464775771478074,0.725627385107593,0,0,0,1.92972281457866,0,27.3977077538868,25.2657818584355,0.473227200159376,0.168584690078102,0.482022059766964,0.110293972732394,0.653638332277218,0.474541238222193,0.134831308160164,0,0,0,0,0.8231480226628,0,0,0,1.18157981336281,0,0,1.88724591328378,0,0,0,0,0,0,0,0.115930404975077,13.854225919827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,3.4214489204541,0,0,0,0.336393253036082,1.30788020649984,1.3200891447771,0,0,0.845302752556,0,0,1.28603687131071,0,0.532844358032199,92.5067618968215,2.17048642156577,0,0.65147236858747,82.0955401595281,0,0,0,0,0,0,0,10.0642439306465,9.18895486672911,0,19.1111324801205,5.95881335396112,15.399242838631,0,0,0,0,0,3.90419561572865,0,1.67516265334349,0,0,0,0,62.4499692850422,7.50255781589516,17.3609615167831,24.3325907991044,58.1678503478747,51.4109873010627,38.0709598726318,26.1823106763115,0,3.10419213877515,2.65690239414175,1.29058417979192,1.82455590382974,0,0,0,0,0,0,0,0.30239029332968,6.4508030032882,56.0136202501428,6.17452207752762,4.86928767171664,32.749263940269,3.69964018630297,14.8418066444991,0.154209693802656,0.177561725313127,1.39616165223476,0,0.348631135379878,0,0,0,2.75554675595056,0.182091168006717,0.655622074797121,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,2.57602529119306,0,0,0,0,1.6068392984416,0.386682873168488,4.31336127921004,3.83759186815324,1.7918754422989,17.6169201583969,8.70100163485371,1.78975917573812,3.56128142586949,0,0,0,0,6.97268323945929,83.110459563289,19.5170435644968,15.0936454286284,1.06461206063404,14.7888608652762,1.48259375283136,2.28999818787186,4.09374206295634,25.6267334022168,4.76575484809562,5.11795582622668,5.13526785640705,19.4103981234821,1.56989728039846,5.39617372749944,0.274537029736055,0.942499218765491,2.42618977887979,4.75530963519025,3.79132610615083,0.48763373908959,2.68084838594413,1.05650146756755,0,4.80778468642623,2.26016233240486,45.2119581707822,10.6150236038595,5.69986150829892,1.73632660280006,5.9030527684197,0,2.16876448669825,2.25356482025793,0,0,0,2.12856638442359,30.821714753459,24.3678220790327,0.75894634753143,0,0,1.34060455107157,0,1.41215701165169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,5.29183956809707,1.29848776109822,4.7735520279288,0,0,0,1.18504244461122,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.66614393599564,0,0,7.76493350141038,0,0,0,0,0,0,0,0.140669416410513,0,0,1.05562704063997,5.77819165928102,0,0,0,0,2.48831670129446,0,0,0,3.25523238601881,0,27.7842475361592,0,0,0,0,0.262379999988587,0,1.82069517256799,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,1.11538995422883,1.23120413606075,0,0,0,0,4.46601623624687,1.83195186803725,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38835424159016,4.888241159469,0,0,0,0.337005664903385,31.3005282446528,0,0,0,0,0.394584402849391,2.41981432097328,0.91821828489147,1.95878396848313,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.52418000472609,0,0,0.146178634172371,0,1.26085721434945,9.09038104922453,2.93774963014692,0,0,0.0633107959558787,0,0.0801588202515337,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79282401272254,3.66656678418694,0,0.399358000997982,0.429226048136571,2.00854311697685,3.22480667936286,1.08089965062721,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.182248669974074,0,6.38326229123505,2.6751839948849,0,0.537862017998534,0,0,3.31045985182716,0,0,0,0,0,0,0,0,2.34483573884932,19.8760333368332,0,0,0.513260513652988,0,16.1248992977219,16.3492477303653,5.385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| 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| ||
|short_description=p1@NPR3 | |||
}} | }} |
Latest revision as of 16:15, 17 September 2015
Short description: | p1@NPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NPR3_5end |
Coexpression cluster: | C1959_Smooth_Fibroblast_Chondrocyte_Mesenchymal_normal_Olfactory_medulloblastoma |
Association with transcript: | -2bp_to_NM_000908, NM_001204375_5end |
EntrezGene: | NPR3 |
HGNC: | 7945 |
UniProt: | P17342Q60I31A8K4A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 7.55e-16 | 58 |
myoblast | 7.55e-16 | 58 |
multi-potent skeletal muscle stem cell | 7.55e-16 | 58 |
muscle cell | 7.27e-14 | 55 |
electrically responsive cell | 4.62e-12 | 61 |
electrically active cell | 4.62e-12 | 61 |
smooth muscle cell | 1.28e-11 | 43 |
smooth muscle myoblast | 1.28e-11 | 43 |
fibroblast | 6.01e-11 | 76 |
vascular associated smooth muscle cell | 4.24e-10 | 32 |
skin fibroblast | 3.23e-08 | 23 |
fat cell | 2.64e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.99e-17 | 62 |
striated muscle tissue | 3.99e-17 | 62 |
myotome | 3.99e-17 | 62 |
muscle tissue | 3.89e-16 | 64 |
musculature | 3.89e-16 | 64 |
musculature of body | 3.89e-16 | 64 |
dense mesenchyme tissue | 4.87e-15 | 73 |
somite | 1.10e-14 | 71 |
presomitic mesoderm | 1.10e-14 | 71 |
presumptive segmental plate | 1.10e-14 | 71 |
dermomyotome | 1.10e-14 | 71 |
trunk paraxial mesoderm | 1.10e-14 | 71 |
paraxial mesoderm | 2.79e-14 | 72 |
presumptive paraxial mesoderm | 2.79e-14 | 72 |
multilaminar epithelium | 2.35e-12 | 83 |
epithelial vesicle | 4.21e-12 | 78 |
mesenchyme | 3.30e-10 | 160 |
entire embryonic mesenchyme | 3.30e-10 | 160 |
systemic artery | 2.70e-09 | 33 |
systemic arterial system | 2.70e-09 | 33 |
trunk mesenchyme | 1.48e-08 | 122 |
artery | 6.43e-08 | 42 |
arterial blood vessel | 6.43e-08 | 42 |
arterial system | 6.43e-08 | 42 |
trunk | 1.64e-07 | 199 |
articulation | 5.05e-07 | 8 |
skeletal joint | 5.05e-07 | 8 |
articular system | 5.05e-07 | 8 |