FFCP PHASE1:Hg19::chr5:32711353..32711379,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:32711353..32711379,+ to FFCP PHASE1:Hg19::chr5:32711353..32711379,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4883 | |EntrezGene=4883 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7945 | |HGNC=7945 | ||
|TSSclassifier=strong | |||
|UniProt=P17342,Q60I31,A8K4A5 | |UniProt=P17342,Q60I31,A8K4A5 | ||
|association_with_transcript=-58bp_to_NM_000908,NM_001204375_5end | |||
|cluster_id=chr5:32711353..32711379,+ | |||
|coexpression_cluster_id=C1959 | |||
|description=CAGE_peak_3_at_NPR3_5end | |||
|id=chr5:32711353..32711379,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.49e-20!180;CL:0000057!2.11e-13!75;CL:0000680!8.76e-12!57;CL:0000056!8.76e-12!57;CL:0000355!8.76e-12!57;CL:0000187!1.90e-10!54;CL:0000393!4.22e-09!60;CL:0000211!4.22e-09!60;CL:0000192!9.22e-09!42;CL:0000514!9.22e-09!42;CL:0000183!2.53e-08!59;CL:0000136!6.74e-08!15;CL:0002620!6.88e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.22e-08;13!CL:0002620;1.80e-08;23!CL:0000192;9.56e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.03e-12,76;CL:0000680,8.50e-12,58;CL:0000056,8.50e-12,58;CL:0000355,8.50e-12,58;CL:0000187,3.32e-10,55;CL:0000136,2.68e-09,15;CL:0000393,8.58e-09,61;CL:0000211,8.58e-09,61;CL:0002620,1.52e-08,23;CL:0000192,4.01e-08,43;CL:0000514,4.01e-08,43;CL:0000359,8.91e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;9.56e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.20e-11!83;UBERON:0002329!1.20e-11!83;UBERON:0003077!1.20e-11!83;UBERON:0003059!1.20e-11!83;UBERON:0007282!1.20e-11!83;UBERON:0009618!1.20e-11!83;UBERON:0007285!1.20e-11!83;UBERON:0002385!2.42e-11!63;UBERON:0001015!2.42e-11!63;UBERON:0000383!2.42e-11!63;UBERON:0001134!3.06e-11!61;UBERON:0002036!3.06e-11!61;UBERON:0003082!3.06e-11!61;UBERON:0004290!4.38e-10!70;UBERON:0000481!1.06e-08!347;UBERON:0000475!1.37e-08!365;UBERON:0002100!4.74e-08!216;UBERON:0000486!1.28e-07!82;UBERON:0005256!1.57e-07!143;UBERON:0003104!5.18e-07!238;UBERON:0009142!5.18e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.10e-07;9!UBERON:0000042;2.10e-07;9!UBERON:0004905;6.53e-07;8!UBERON:0000982;6.53e-07;8!UBERON:0004770;6.53e-07;8!UBERON:0003688;9.39e-07;6!UBERON:0002358;9.39e-07;6!UBERON:0003684;9.39e-07;6!UBERON:0001178;9.39e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.49e-11,62;UBERON:0002036,3.49e-11,62;UBERON:0003082,3.49e-11,62;UBERON:0002385,1.82e-10,64;UBERON:0001015,1.82e-10,64;UBERON:0000383,1.82e-10,64;UBERON:0007524,3.32e-09,73;UBERON:0002329,6.64e-09,71;UBERON:0003059,6.64e-09,71;UBERON:0007282,6.64e-09,71;UBERON:0004290,6.64e-09,71;UBERON:0009618,6.64e-09,71;UBERON:0003077,1.26e-08,72;UBERON:0007285,1.26e-08,72;UBERON:0000486,2.04e-07,83;UBERON:0004573,2.40e-07,33;UBERON:0004571,2.40e-07,33;UBERON:0007503,3.87e-07,78;UBERON:0004905,6.73e-07,8;UBERON:0000982,6.73e-07,8;UBERON:0004770,6.73e-07,8 | |||
|phase1_expression=22.528119029549,17.9844440068426,17.4783461079004,21.0153926541574,22.7950158157917,24.4254786748103,2.53299878168311,2.52687949370732,0,0,0,0,0,20.9165136502479,27.8373795611449,0,0,0,0,0,0.408001382488506,0,0.286235987131057,0,1.38096903554283,0,0,0,0,0.383829398097213,0,0,0,0,0,0,12.6248188913984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,3.36305137788922,5.53106578027662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.37022759742827,15.1804444001518,51.6378047954966,15.0640379719257,2.3858578411533,2.43317435151318,0.472674085820339,1.10864698731282,0.790513071238134,3.20898734969396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,1.98788780678127,5.95163404823525,1.58891016975863,45.3201860783126,9.930714701554,6.72813120170769,2.1349799145941,11.5933747756065,0,0.538842688278752,1.14423332179421,3.17850598054356,0,0.234321431833797,1.5608003841516,0,0.298897361103602,0.23486899728753,0.323745888736263,0,1.83738754129404,0.245668634623536,1.23990937410919,1.18800285728205,3.4617370098998,0,0,0,0.500474079487857,0.831192346452549,2.63386572528503,8.58165828237255,9.01428353439581,0.113432183160021,5.74046834204358,3.63047560991565,11.6562545637759,12.6038260355449,7.62588716364448,3.60696756063881,6.70020682793723,29.5358581422216,27.1849244399744,3.78650661366172,6.71964260088785,18.7509425909822,33.3709016965617,10.8812266085851,1.3564847384839,0,0,0,0.121973706129595,0,0.232387885739037,0.414644220061482,0,0,0,0.643240938192885,0,19.0390850493111,12.9938306700525,1.0647612003586,1.01150814046861,0,0.772057809126758,1.30727666455444,0.237270619111097,0.808987848960987,0.588664395376038,0.769494313892781,0,0,1.2347220339942,0,0,0,2.36315962672562,0,0,1.54411029268673,0,0,0,0,0,0,0,0.115930404975077,4.93116515790451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,2.1798003441664,1.3200891447771,0,3.57656445851882,0,0.26593811658487,2.08014873822732,0.514414748524284,4.25547396069835,1.8649552531127,32.5989825540576,1.08524321078289,0.823240336780769,1.30294473717494,27.0097881044335,0.791951872933429,0,0,0,0,0,0,10.7831184971212,14.9320516584348,0,7.23906533337896,4.72595541865882,4.83464600747718,0,0,0,0,0,3.90419561572865,0.773288812777695,1.34013012267479,0,0,0,0,20.7348621005346,6.5022167737758,17.0896964930833,14.1420185840949,29.2623541627345,27.4402202159046,16.8683637589507,19.260550382574,2.27407504055985,1.03473071292505,3.32112799267718,1.47495334833363,1.04260337361699,0,0,0.206768026122887,0,0,0,0,0.604780586659361,7.69134204238208,21.6381382336168,3.92924132206303,7.56020980608636,23.5385334570684,2.2519548960105,13.3576259800492,0.154209693802656,0.710246901252508,0.574890092096664,1.55776328755086,0.464841513839837,0,0,0.0920809889358963,2.06666006696292,0.364182336013434,1.18011973463482,0,0.15403067420883,0,0,0,0,0,0.647747748306418,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,1.6068392984416,0.580024309752732,3.38906957652218,2.76306614507033,1.92971201478343,8.1639386099888,5.36561767482646,1.44885266607372,3.38321735457602,0.165284915360978,0,0,0,5.57814659156743,78.70308670766,10.455559052409,9.54904098545875,1.59691809095107,10.4391959049009,0.55597265731176,1.5743737541619,4.83805880167568,13.2879358381865,2.66882271493355,3.32667128704734,4.2793898803392,8.90969094192623,2.35484592059769,3.41757669408298,0.54907405947211,0.706874414074119,1.61745985258653,4.75530963519025,2.10629228119491,1.46290121726877,0.974853958525138,3.16950440270266,0.136499911407986,3.11091950298168,5.65040583101214,19.8491523676605,6.6343897524122,6.13831239355268,1.15755106853338,4.59126326432643,0,0.6196469961995,0.563391205064483,0,0,0,0.709522128141196,16.6775031885155,17.4526293268748,0,0,0,0,0,2.07116361708914,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0.383010740264733,14.8171507906718,0.973865820823666,9.5471040558576,0,0,0,1.86220955581764,0,0,0,0,0,0,0,0,0.278406173895242,0,1.08182271390393,4.32993558397166,0,0,5.71381899160387,0,0,0,0.47748896947538,0,0,0,0,0.111308705022906,0,0.844501632511974,3.78571177677032,0,0,0,0,0.933118762985422,0,1.25314822272926,0,1.7755813014648,0,28.8956174376056,0,0.0927680981618513,0,0,0.962059999958153,0,4.55173793141999,1.27126825146383,0.709163045303809,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,2.28770773389879,1.11538995422883,1.76985594558733,0,0,0,0,0.638002319463839,1.28236630762607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,1.22206028986725,0,0,0,0.067401132980677,6.42062117839031,0.234264445725339,0,0,0,0.394584402849391,0,3.0607276163049,1.01098527405581,0,0,0,0,0,1.19472429772959,0,0,1.04135843001079,0,0,0.698906672968121,0.171986032471617,0.870806981601766,0.65780385377567,0.821154570532092,0.581934098930517,3.79501344773451,3.61569185248852,0,0,0.0633107959558787,0,0.721429382263803,1.2807179684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| ||
|short_description=p3@NPR3 | |||
}} | }} |
Latest revision as of 16:12, 17 September 2015
Short description: | p3@NPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NPR3_5end |
Coexpression cluster: | C1959_Smooth_Fibroblast_Chondrocyte_Mesenchymal_normal_Olfactory_medulloblastoma |
Association with transcript: | -58bp_to_NM_000908, NM_001204375_5end |
EntrezGene: | NPR3 |
HGNC: | 7945 |
UniProt: | P17342Q60I31A8K4A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.03e-12 | 76 |
muscle precursor cell | 8.50e-12 | 58 |
myoblast | 8.50e-12 | 58 |
multi-potent skeletal muscle stem cell | 8.50e-12 | 58 |
muscle cell | 3.32e-10 | 55 |
fat cell | 2.68e-09 | 15 |
electrically responsive cell | 8.58e-09 | 61 |
electrically active cell | 8.58e-09 | 61 |
skin fibroblast | 1.52e-08 | 23 |
smooth muscle cell | 4.01e-08 | 43 |
smooth muscle myoblast | 4.01e-08 | 43 |
vascular associated smooth muscle cell | 8.91e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.49e-11 | 62 |
striated muscle tissue | 3.49e-11 | 62 |
myotome | 3.49e-11 | 62 |
muscle tissue | 1.82e-10 | 64 |
musculature | 1.82e-10 | 64 |
musculature of body | 1.82e-10 | 64 |
dense mesenchyme tissue | 3.32e-09 | 73 |
somite | 6.64e-09 | 71 |
presomitic mesoderm | 6.64e-09 | 71 |
presumptive segmental plate | 6.64e-09 | 71 |
dermomyotome | 6.64e-09 | 71 |
trunk paraxial mesoderm | 6.64e-09 | 71 |
paraxial mesoderm | 1.26e-08 | 72 |
presumptive paraxial mesoderm | 1.26e-08 | 72 |
multilaminar epithelium | 2.04e-07 | 83 |
systemic artery | 2.40e-07 | 33 |
systemic arterial system | 2.40e-07 | 33 |
epithelial vesicle | 3.87e-07 | 78 |
articulation | 6.73e-07 | 8 |
skeletal joint | 6.73e-07 | 8 |
articular system | 6.73e-07 | 8 |