FFCP PHASE1:Hg19::chr5:17217398..17217420,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:17217398..17217420,- to FFCP PHASE1:Hg19::chr5:17217398..17217420,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=87bp_to_ENST00000538380_5end | |||
|cluster_id=chr5:17217398..17217420,- | |||
|description=CAGE_peak_1_at_ENST00000538380_5end | |||
|id=chr5:17217398..17217420,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000775;5.52e-17;3!CL:0000333;2.84e-10;5!CL:0000094;6.33e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,5.75e-17,3;CL:0000094,6.42e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;4.86e-11;10!DOID:3095;1.02e-08;22!DOID:2994;1.02e-08;22!DOID:169;1.04e-08;6!DOID:3193;4.55e-07;2!DOID:962;4.55e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.02e-11,10;DOID:3095,9.02e-09,22;DOID:2994,9.02e-09,22;DOID:169,9.27e-09,6;DOID:3193,3.70e-07,2;DOID:962,3.70e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001869!3.03e-22!32;UBERON:0001893!1.45e-20!34;UBERON:0002020!1.46e-20!34;UBERON:0003528!1.46e-20!34;UBERON:0000956!4.33e-20!25;UBERON:0000203!4.33e-20!25;UBERON:0002791!2.36e-19!33;UBERON:0002619!6.80e-19!22;UBERON:0001049!1.61e-18!57;UBERON:0005068!1.61e-18!57;UBERON:0006241!1.61e-18!57;UBERON:0007135!1.61e-18!57;UBERON:0002780!1.34e-17!41;UBERON:0001890!1.34e-17!41;UBERON:0006240!1.34e-17!41;UBERON:0002616!2.04e-17!59;UBERON:0003080!5.04e-17!42;UBERON:0000955!5.89e-17!69;UBERON:0006238!5.89e-17!69;UBERON:0001017!1.93e-16!82;UBERON:0000073!3.15e-16!94;UBERON:0001016!3.15e-16!94;UBERON:0001950!6.35e-16!20;UBERON:0005743!3.19e-15!86;UBERON:0002346!2.16e-14!90;UBERON:0003075!3.38e-12!86;UBERON:0007284!3.38e-12!86;UBERON:0003056!9.27e-12!61;UBERON:0001737!1.02e-11!9;UBERON:0000924!2.74e-09!173;UBERON:0006601!2.74e-09!173;UBERON:0000033!5.18e-09!123;UBERON:0001871!1.83e-08!7;UBERON:0000153!3.57e-08!129;UBERON:0007811!3.57e-08!129;UBERON:0004121!7.59e-08!169;UBERON:0000200!1.35e-07!6;UBERON:0007023!3.37e-07!115;UBERON:0002771!9.69e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.59e-18;22!UBERON:0000956;6.01e-16;25!UBERON:0000203;6.01e-16;25!UBERON:0001950;5.06e-14;20!UBERON:0002791;1.61e-11;32!UBERON:0001869;2.32e-11;32!UBERON:0003528;2.14e-10;34!UBERON:0002020;2.14e-10;34!UBERON:0000013;2.84e-10;5!UBERON:0002410;2.84e-10;5!UBERON:0001893;3.24e-10;34!UBERON:0000200;1.26e-08;6!UBERON:0000922;4.13e-08;49!UBERON:0001871;1.25e-07;6!UBERON:0002771;4.55e-07;2!UBERON:0001954;4.55e-07;2!UBERON:0003714;4.55e-07;2!UBERON:0002702;4.55e-07;2!UBERON:0003022;4.55e-07;2!UBERON:0002421;4.55e-07;2!UBERON:0002600;4.55e-07;2!UBERON:0002780;7.85e-07;41!UBERON:0001890;7.85e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,4.73e-18,22;UBERON:0000956,6.18e-16,25;UBERON:0000203,6.18e-16,25;UBERON:0001950,5.42e-14,20;UBERON:0002791,1.73e-12,32;UBERON:0001869,1.73e-12,32;UBERON:0003528,9.37e-12,34;UBERON:0002020,9.37e-12,34;UBERON:0001893,9.37e-12,34;UBERON:0000013,2.47e-10,5;UBERON:0002410,2.47e-10,5;UBERON:0002780,9.79e-10,41;UBERON:0001890,9.79e-10,41;UBERON:0003080,9.79e-10,41;UBERON:0006240,9.79e-10,41;UBERON:0001016,2.78e-09,89;UBERON:0000200,1.31e-08,6;UBERON:0000955,1.24e-07,68;UBERON:0006238,1.24e-07,68;UBERON:0001871,1.29e-07,6;UBERON:0000073,1.74e-07,53;UBERON:0002616,1.74e-07,53;UBERON:0003714,3.70e-07,2;UBERON:0001954,4.17e-07,2;UBERON:0003022,4.17e-07,2;UBERON:0002421,4.17e-07,2;UBERON:0002600,4.17e-07,2;UBERON:0002771,4.42e-07,2;UBERON:0001049,4.53e-07,56;UBERON:0005068,4.53e-07,56;UBERON:0006241,4.53e-07,56;UBERON:0007135,4.53e-07,56;UBERON:0002702,4.98e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0.72995471815166,0,0,0,0,0,0.473227200159376,1.18009283054671,0.482022059766964,0.110293972732394,0.653638332277218,0.237270619111097,0.674156540800822,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.502548796003046,0,3.74503511973591,0,6.21623270154053,0.24538298343828,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0.648473311192717,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0.236387681767936,0,0.583209226766509,0.694499979733169,0,0,0,0.663475559587348,0.295547618953547,0,0.10893846351899,0,0,0.113942055847001,0,0,2.28159481036217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0.234264445725339,0,0,0,0,0,3.67287313956588,0,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0,0.870806981601766,0.292357268344742,0.164230914106418,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.544813624446302,0,0,0,0,0,0.121499113316049,0,0,0,0.633602019116439,0.717149357331379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0.342173675768659,0,0,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,1.22026264901963,1.1267183763585,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,2.20172318598255,0,0,0.637724760305049,1.61116493536703,1.67593475391973,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,6.80593579798639,0.138314504928436,0.645902582527404,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.270150338473579,0,0.826747186004736,0.126831620387814,6.01672289920042,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0.407948941145488,3.9271562130634,0,0,0,0,0,0.109265571963696,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0.72995471815166,0,0,0,0,0,0.473227200159376,1.18009283054671,0.482022059766964,0.110293972732394,0.653638332277218,0.237270619111097,0.674156540800822,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.502548796003046,0,3.74503511973591,0,6.21623270154053,0.24538298343828,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0.648473311192717,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,3.99227596002388,0,0,0,0,0,0.236387681767936,0,0.583209226766509,0.694499979733169,0,0,0,0.663475559587348,0.295547618953547,0,0.10893846351899,0,0,0.113942055847001,0,0,2.28159481036217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0.234264445725339,0,0,0,0,0,3.67287313956588,0,0,0,0,0.661983911750998,0,0,0,0,0,0,0,0,0,0.870806981601766,0.292357268344742,0.164230914106418,0,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.544813624446302,0,0,0,0,0,0.121499113316049,0,0,0,0.633602019116439,0.717149357331379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0.342173675768659,0,0,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,1.22026264901963,1.1267183763585,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,2.20172318598255,0,0,0.637724760305049,1.61116493536703,1.67593475391973,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,6.80593579798639,0.138314504928436,0.645902582527404,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.270150338473579,0,0.826747186004736,0.126831620387814,6.01672289920042,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0.407948941145488,3.9271562130634,0,0,0,0,0,0.109265571963696,0,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p1@ENST00000538380 | |||
}} | }} |
Latest revision as of 13:05, 30 July 2015
Short description: | p1@ENST00000538380 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000538380_5end |
Coexpression cluster: | NA |
Association with transcript: | 87bp_to_ENST00000538380_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 5.75e-17 | 3 |
granulocyte | 6.42e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 4.73e-18 | 22 |
cerebral cortex | 6.18e-16 | 25 |
pallium | 6.18e-16 | 25 |
neocortex | 5.42e-14 | 20 |
regional part of telencephalon | 1.73e-12 | 32 |
cerebral hemisphere | 1.73e-12 | 32 |
brain grey matter | 9.37e-12 | 34 |
gray matter | 9.37e-12 | 34 |
telencephalon | 9.37e-12 | 34 |
sympathetic nervous system | 2.47e-10 | 5 |
autonomic nervous system | 2.47e-10 | 5 |
regional part of forebrain | 9.79e-10 | 41 |
forebrain | 9.79e-10 | 41 |
anterior neural tube | 9.79e-10 | 41 |
future forebrain | 9.79e-10 | 41 |
nervous system | 2.78e-09 | 89 |
gyrus | 1.31e-08 | 6 |
brain | 1.24e-07 | 68 |
future brain | 1.24e-07 | 68 |
temporal lobe | 1.29e-07 | 6 |
regional part of nervous system | 1.74e-07 | 53 |
regional part of brain | 1.74e-07 | 53 |
neural tissue | 3.70e-07 | 2 |
Ammon's horn | 4.17e-07 | 2 |
lobe parts of cerebral cortex | 4.17e-07 | 2 |
hippocampal formation | 4.17e-07 | 2 |
limbic lobe | 4.17e-07 | 2 |
middle temporal gyrus | 4.42e-07 | 2 |
neural tube | 4.53e-07 | 56 |
neural rod | 4.53e-07 | 56 |
future spinal cord | 4.53e-07 | 56 |
neural keel | 4.53e-07 | 56 |
middle frontal gyrus | 4.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.02e-11 | 10 |
germ cell and embryonal cancer | 9.02e-09 | 22 |
germ cell cancer | 9.02e-09 | 22 |
neuroendocrine tumor | 9.27e-09 | 6 |
peripheral nerve sheath neoplasm | 3.70e-07 | 2 |
neurofibroma | 3.70e-07 | 2 |