FFCP PHASE1:Hg19::chr5:156887031..156887059,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:156887031..156887059,+ to FFCP PHASE1:Hg19::chr5:156887031..156887059,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=348938 | |EntrezGene=348938 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28018 | |HGNC=28018 | ||
|TSSclassifier=strong | |||
|UniProt=Q0D2K0 | |UniProt=Q0D2K0 | ||
|association_with_transcript=4bp_to_ENST00000311946,ENST00000435489,NM_001099287,NM_001172292,uc003lwx.3,uc011ddq.1_5end | |||
|cluster_id=chr5:156887031..156887059,+ | |||
|coexpression_cluster_id=C1702 | |||
|description=CAGE_peak_3_at_NIPAL4_5end | |||
|id=chr5:156887031..156887059,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.29e-09!43;CL:0000236!5.20e-07!14;CL:0000223!5.57e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002368;9.85e-14;13!CL:0002076;1.99e-13;42!CL:0000244;5.34e-11;4!CL:0000731;5.34e-11;4!CL:0002159;4.76e-10;14!CL:0002328;3.83e-08;3!CL:0002621;6.38e-08;3!CL:0002251;8.11e-08;20!CL:0000362;8.44e-07;9!CL:0000240;9.29e-07;6!CL:0000311;9.29e-07;6!CL:0000079;9.29e-07;6!CL:0000237;9.29e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.12e-17,42;CL:0000223,4.15e-15,58;CL:0002368,9.86e-14,13;CL:0000066,2.17e-11,253;CL:0000244,5.25e-11,4;CL:0000731,5.25e-11,4;CL:0002159,4.62e-10,14;CL:0002328,3.50e-08,3;CL:0002621,5.46e-08,3;CL:0002251,7.26e-08,20;CL:0000362,8.43e-07,9;CL:0000240,9.26e-07,6;CL:0000311,9.26e-07,6;CL:0000079,9.26e-07,6;CL:0000237,9.26e-07,6;CL:0000036,9.26e-07,6;CL:0000357,9.26e-07,6;CL:0000114,9.26e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;6.27e-09;58!CL:0000357;9.29e-07;6!CL:0000114;9.29e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!5.56e-10!129;UBERON:0007811!5.56e-10!129;UBERON:0000033!5.75e-10!123;UBERON:0003075!2.37e-09!86;UBERON:0007284!2.37e-09!86;UBERON:0003056!2.57e-09!61;UBERON:0004121!2.60e-09!169;UBERON:0007023!4.30e-09!115;UBERON:0001049!6.43e-09!57;UBERON:0005068!6.43e-09!57;UBERON:0006241!6.43e-09!57;UBERON:0007135!6.43e-09!57;UBERON:0000064!9.46e-09!219;UBERON:0006554!1.11e-08!44;UBERON:0000924!1.27e-08!173;UBERON:0006601!1.27e-08!173;UBERON:0000062!1.69e-08!511;UBERON:0002346!2.50e-08!90;UBERON:0001008!2.74e-08!45;UBERON:0002050!3.65e-07!605;UBERON:0005423!3.65e-07!605;UBERON:0002020!4.29e-07!34;UBERON:0003528!4.29e-07!34;UBERON:0000922!5.31e-07!612;UBERON:0001893!5.37e-07!34;UBERON:0003064!6.50e-07!37;UBERON:0000467!6.91e-07!625;UBERON:0000923!6.99e-07!604;UBERON:0005291!6.99e-07!604;UBERON:0006598!6.99e-07!604;UBERON:0002532!6.99e-07!604;UBERON:0000480!8.55e-07!626;UBERON:0002780!8.72e-07!41;UBERON:0001890!8.72e-07!41;UBERON:0006240!8.72e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.80e-09;12!UBERON:0000365;9.29e-09;5!UBERON:0004815;3.83e-08;3!UBERON:0002031;3.83e-08;3!UBERON:0001949;6.38e-08;3!UBERON:0001723;8.60e-08;3!UBERON:0001033;8.60e-08;3!UBERON:0005910;2.91e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,9.17e-09,5;UBERON:0004815,3.50e-08,3;UBERON:0002031,3.50e-08,3;UBERON:0001949,5.46e-08,3;UBERON:0001723,7.53e-08,3;UBERON:0001033,7.53e-08,3;UBERON:0010056,7.53e-08,3;UBERON:0000161,8.65e-08,36;UBERON:0004119,1.60e-07,160;UBERON:0000925,1.60e-07,160;UBERON:0006595,1.60e-07,160;UBERON:0005910,2.88e-07,6;UBERON:0003102,3.82e-07,99;UBERON:0001444,4.66e-07,49;UBERON:0000166,5.23e-07,22;UBERON:0010371,9.46e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0.136874425072884,0.376627918784408,0.382067028739756,0.164201178899891,0.157421562627358,0,0.767658796194425,0,4.59710612239464,7.8313538882345,5.9160641626686,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0.727752183563449,0,0.411167888021826,0,0.863077176966451,0.768482119587302,0.709446689665756,0.344745680736619,1.29096936716765,2.70852973188684,0.188242339542605,0.272906150057846,0.224723484445085,0.306083892370903,0,1.91801137739712,0.659702600373432,1.39624560335142,0.426224750532694,0.290209238628584,0,1.24564449799115,0.75374599577023,2.60741459210101,1.3031330682307,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,0.889509253863555,0.853460445133014,2.00197993518006,1.14950487990897,0.661044872784862,0.954053754535364,0.569212969109448,1.76171156811282,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.886917589850256,0.263504357079378,0.130979075497713,15.6646973965793,8.89882662682631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7745394078484,0,0,0,0,0,0,0,0.49333509683432,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,1.06502877754984,0.10075209822764,0.169560592310488,5.21804303540901,6.54590689418003,2.86804595389004,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,3.40225884766739,7.86812272803337,6.33332526193274,4.53683381276795,0.325808305310325,0,0,0.579652024875384,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,1.55952606966625,0.53735113621709,1.16253575405585,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531876233169741,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0.206768026122887,0,0.213455115606889,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,2.00506470303285,7.64272208167939,0,0,0.131124414959424,1.35359883872224,0.539107359730903,0.784349769176855,2.92278449306521,1.47772280450026,0,0,0.647747748306418,0,0.270946437543853,0,0.509752546090077,0.831076008928724,1.11937377361089,0,0,0.512900250232778,0,2.27764876265012,0,0,0,13.208107373912,7.80072295243825,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,4.13212288402445,4.80475168412765,4.08360679982669,6.87872909817739,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0.349934720244983,5.09977197445214,4.69211592875051,0,0,10.3321289441095,18.5318623234388,31.9269710546406,15.8509146142802,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0.307160702099232,0.994147647766298,0.281338832821026,0.111308705022906,0,0,0.19924798825107,0.552567831062295,0,0.102268682502155,0.123084805461069,0,0,0,0,1.97286811273867,0,0,0,0.463840490809256,0,0,0,0,2.61724931056649,0,1.65471377237555,0,0,1.56262495439963,0,0.241192877250816,0,0.110579259931225,0,0,0,10.177933332338,2.00070672109872,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,1.99052386215701,0.796118080530053,0,0.889563386041866,1.23563938946503,1.35748534357092,2.02203398942031,0,0.234264445725339,0,3.32629852184552,1.69946265673865,0,2.41981432097328,0,0,0.150323419414493,0,0,0,0,0,0,0,0,2.35181753794506,0.609414446062818,0.34945333648406,0.171986032471617,0,0,0,3.58859361007152,0,0,0,0.19871461170299,0.316553979779393,0,0,0.85381197895741,0.39961921916426,1.58499458869517,0,0,0,0,1.64985824231757,0.135904206073614,0.313808538937,0,0,0,1.50595916781192,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0.2249738915515,2.32140586367385,0,5.70238968918752,0,0.209818352539992,0,0.35857467866569,0,0,0,0,0,0,0,1.19730191562487,0.082092520749339,0,0.226624183040251,0,0,0.775697738169303,1.58679122091228,0.684347351537318,0,0,0.157204305099666,0,0,0,0,5.10673006216145,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,1.66393577305278,1.17983165588629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.308801447160972,0,0.353378291891762,0,0,0,0.345430341731199,0,0.691292180758654,0,0,0,0,0,0,0.39997479170986,0.426766918776564,0,0.567515953566836,0,6.15469833965556,5.59869534029676,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0.3062454773532,0.513833800771676,0,0.638535436228605,0.205116364240755,0,0.484100767249525,0.322951291263702,4.28308260777463,0,0,2.38457178078183,4.85207797831421,0,0.690359926060101,0,0,0,0,0,0,0.591424344868181,0.33768792309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| ||
|short_description=p3@NIPAL4 | |||
}} | }} |
Latest revision as of 13:55, 16 September 2015
Short description: | p3@NIPAL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NIPAL4_5end |
Coexpression cluster: | C1702_Urothelial_Bronchial_Corneal_Sebocyte_Tracheal_Esophageal_Gingival |
Association with transcript: | 4bp_to_ENST00000311946, ENST00000435489, NM_001099287, NM_001172292, uc003lwx.3, uc011ddq.1_5end |
EntrezGene: | NIPAL4 |
HGNC: | 28018 |
UniProt: | Q0D2K0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.12e-17 | 42 |
endodermal cell | 4.15e-15 | 58 |
respiratory epithelial cell | 9.86e-14 | 13 |
epithelial cell | 2.17e-11 | 253 |
transitional epithelial cell | 5.25e-11 | 4 |
urothelial cell | 5.25e-11 | 4 |
general ecto-epithelial cell | 4.62e-10 | 14 |
bronchial epithelial cell | 3.50e-08 | 3 |
gingival epithelial cell | 5.46e-08 | 3 |
epithelial cell of alimentary canal | 7.26e-08 | 20 |
epidermal cell | 8.43e-07 | 9 |
stratified squamous epithelial cell | 9.26e-07 | 6 |
keratin accumulating cell | 9.26e-07 | 6 |
stratified epithelial cell | 9.26e-07 | 6 |
keratinizing barrier epithelial cell | 9.26e-07 | 6 |
epithelial fate stem cell | 9.26e-07 | 6 |
stratified epithelial stem cell | 9.26e-07 | 6 |
surface ectodermal cell | 9.26e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
urothelium | 9.17e-09 | 5 |
lower respiratory tract epithelium | 3.50e-08 | 3 |
epithelium of bronchus | 3.50e-08 | 3 |
gingival epithelium | 5.46e-08 | 3 |
tongue | 7.53e-08 | 3 |
gustatory system | 7.53e-08 | 3 |
future tongue | 7.53e-08 | 3 |
orifice | 8.65e-08 | 36 |
endoderm-derived structure | 1.60e-07 | 160 |
endoderm | 1.60e-07 | 160 |
presumptive endoderm | 1.60e-07 | 160 |
transitional epithelium | 2.88e-07 | 6 |
surface structure | 3.82e-07 | 99 |
subdivision of head | 4.66e-07 | 49 |
oral opening | 5.23e-07 | 22 |
ecto-epithelium | 9.46e-07 | 104 |