FFCP PHASE1:Hg19::chr5:138629349..138629386,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:138629349..138629386,+ to FFCP PHASE1:Hg19::chr5:138629349..138629386,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9782 | |EntrezGene=9782 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6912 | |HGNC=6912 | ||
|TSSclassifier=strong | |||
|UniProt=D6RE02,D6RAY2 | |UniProt=D6RE02,D6RAY2 | ||
|association_with_transcript=0bp_to_ENST00000512876,ENST00000513678,uc003ldx.2,uc010jfc.2_5end | |||
|cluster_id=chr5:138629349..138629386,+ | |||
|coexpression_cluster_id=C2804 | |||
|description=CAGE_peak_3_at_MATR3_5end | |||
|id=chr5:138629349..138629386,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.23e-15!140;CL:0000037!4.66e-12!172;CL:0000566!4.66e-12!172;CL:0002031!3.47e-11!124;CL:0002087!1.60e-10!119;CL:0002032!2.29e-10!165;CL:0000837!2.29e-10!165;CL:0000988!3.26e-10!182;CL:0000542!5.28e-10!53;CL:0000051!5.28e-10!53;CL:0000838!9.49e-10!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.46e-16,136;CL:0000037,1.54e-12,168;CL:0002031,8.98e-12,120;CL:0002087,4.24e-11,115;CL:0000988,5.18e-11,177;CL:0002032,8.31e-11,161;CL:0000837,8.31e-11,161;CL:0000542,5.28e-10,53;CL:0000051,5.28e-10,53;CL:0000838,9.49e-10,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.58e-24!82;UBERON:0005743!2.84e-23!86;UBERON:0001049!6.52e-23!57;UBERON:0005068!6.52e-23!57;UBERON:0006241!6.52e-23!57;UBERON:0007135!6.52e-23!57;UBERON:0003080!1.12e-21!42;UBERON:0000073!1.20e-21!94;UBERON:0001016!1.20e-21!94;UBERON:0002780!2.67e-21!41;UBERON:0001890!2.67e-21!41;UBERON:0006240!2.67e-21!41;UBERON:0002616!2.60e-19!59;UBERON:0002020!7.84e-19!34;UBERON:0003528!7.84e-19!34;UBERON:0001893!9.84e-19!34;UBERON:0000955!1.66e-18!69;UBERON:0006238!1.66e-18!69;UBERON:0002791!4.14e-18!33;UBERON:0001869!4.76e-18!32;UBERON:0002346!4.38e-15!90;UBERON:0003075!5.12e-15!86;UBERON:0007284!5.12e-15!86;UBERON:0000956!2.63e-14!25;UBERON:0000203!2.63e-14!25;UBERON:0002619!3.83e-14!22;UBERON:0003056!2.01e-13!61;UBERON:0001950!3.21e-13!20;UBERON:0007023!1.43e-11!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.29e-16;32!UBERON:0003528;2.72e-16;34!UBERON:0002020;2.72e-16;34!UBERON:0002791;3.57e-16;32!UBERON:0001893;3.69e-16;34!UBERON:0002780;3.39e-15;41!UBERON:0001890;3.39e-15;41!UBERON:0000956;2.62e-14;25!UBERON:0000203;2.62e-14;25!UBERON:0002619;3.53e-14;22!UBERON:0001950;3.02e-13;20!UBERON:0000073;9.07e-13;53!UBERON:0002616;9.07e-13;53!UBERON:0000955;2.12e-09;68!UBERON:0001017;1.25e-08;75!UBERON:0001016;4.14e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.93e-24,81;UBERON:0001049,1.61e-22,56;UBERON:0005068,1.61e-22,56;UBERON:0006241,1.61e-22,56;UBERON:0007135,1.61e-22,56;UBERON:0001016,2.51e-22,89;UBERON:0000073,1.31e-21,53;UBERON:0002616,1.31e-21,53;UBERON:0002780,2.67e-21,41;UBERON:0001890,2.67e-21,41;UBERON:0003080,2.67e-21,41;UBERON:0006240,2.67e-21,41;UBERON:0003528,7.84e-19,34;UBERON:0002020,7.84e-19,34;UBERON:0001893,9.84e-19,34;UBERON:0000955,3.95e-18,68;UBERON:0006238,3.95e-18,68;UBERON:0001869,4.76e-18,32;UBERON:0002791,8.40e-18,32;UBERON:0000956,2.63e-14,25;UBERON:0000203,2.63e-14,25;UBERON:0002619,3.83e-14,22;UBERON:0002346,5.95e-14,86;UBERON:0003075,7.04e-14,82;UBERON:0007284,7.04e-14,82;UBERON:0003056,2.77e-13,61;UBERON:0001950,3.21e-13,20;UBERON:0007023,3.42e-11,114;UBERON:0010371,4.32e-07,104 | |||
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| ||
|short_description=p3@MATR3 | |||
}} | }} |
Latest revision as of 23:51, 24 September 2015
Short description: | p3@MATR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MATR3_5end |
Coexpression cluster: | C2804_parietal_Mast_Neurons_occipital_Neural_Fibroblast_pineal |
Association with transcript: | 0bp_to_ENST00000512876, ENST00000513678, uc003ldx.2, uc010jfc.2_5end |
EntrezGene: | MATR3 |
HGNC: | 6912 |
UniProt: | D6RE02D6RAY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.46e-16 | 136 |
hematopoietic stem cell | 1.54e-12 | 168 |
hematopoietic lineage restricted progenitor cell | 8.98e-12 | 120 |
nongranular leukocyte | 4.24e-11 | 115 |
hematopoietic cell | 5.18e-11 | 177 |
hematopoietic oligopotent progenitor cell | 8.31e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.31e-11 | 161 |
lymphocyte | 5.28e-10 | 53 |
common lymphoid progenitor | 5.28e-10 | 53 |
lymphoid lineage restricted progenitor cell | 9.49e-10 | 52 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.93e-24 | 81 |
neural tube | 1.61e-22 | 56 |
neural rod | 1.61e-22 | 56 |
future spinal cord | 1.61e-22 | 56 |
neural keel | 1.61e-22 | 56 |
nervous system | 2.51e-22 | 89 |
regional part of nervous system | 1.31e-21 | 53 |
regional part of brain | 1.31e-21 | 53 |
regional part of forebrain | 2.67e-21 | 41 |
forebrain | 2.67e-21 | 41 |
anterior neural tube | 2.67e-21 | 41 |
future forebrain | 2.67e-21 | 41 |
brain grey matter | 7.84e-19 | 34 |
gray matter | 7.84e-19 | 34 |
telencephalon | 9.84e-19 | 34 |
brain | 3.95e-18 | 68 |
future brain | 3.95e-18 | 68 |
cerebral hemisphere | 4.76e-18 | 32 |
regional part of telencephalon | 8.40e-18 | 32 |
cerebral cortex | 2.63e-14 | 25 |
pallium | 2.63e-14 | 25 |
regional part of cerebral cortex | 3.83e-14 | 22 |
neurectoderm | 5.95e-14 | 86 |
neural plate | 7.04e-14 | 82 |
presumptive neural plate | 7.04e-14 | 82 |
pre-chordal neural plate | 2.77e-13 | 61 |
neocortex | 3.21e-13 | 20 |
adult organism | 3.42e-11 | 114 |
ecto-epithelium | 4.32e-07 | 104 |