FFCP PHASE1:Hg19::chr5:138089100..138089146,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:138089100..138089146,+ to FFCP PHASE1:Hg19::chr5:138089100..138089146,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1495 | |EntrezGene=1495 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2509 | |HGNC=2509 | ||
|TSSclassifier=strong | |||
|UniProt=P35221,F8W845,E5RIC3,E5RJ41,E5RIT8,E5RJL0,E5RJZ2,F6XBD8,B4E2G8 | |UniProt=P35221,F8W845,E5RIC3,E5RJ41,E5RIT8,E5RJL0,E5RJZ2,F6XBD8,B4E2G8 | ||
|association_with_transcript=0bp_to_ENST00000302763,ENST00000355078,ENST00000518245,ENST00000518910,ENST00000519309,ENST00000520339,ENST00000521724,ENST00000521941,ENST00000537034,ENST00000541863,NM_001903,uc003ldh.2,uc003ldi.2,uc011cyx.1,uc011cyy.1_5end | |||
|cluster_id=chr5:138089100..138089146,+ | |||
|description=CAGE_peak_1_at_CTNNA1_5end | |||
|id=chr5:138089100..138089146,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.05e-12!254;CL:0000220!1.51e-12!246;CL:0002321!2.93e-12!248;CL:0000222!3.91e-11!119;CL:0000055!2.38e-09!180;CL:0002139!2.59e-09!24;CL:0000213!4.15e-08!57;CL:0000215!4.15e-08!57;CL:0000359!3.87e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.56e-09;24!CL:0000359;9.61e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.60e-12,253;CL:0002321,2.05e-12,250;CL:0000222,2.94e-11,121;CL:0002139,2.59e-09,24;CL:0000213,5.26e-08,58;CL:0000215,5.26e-08,58;CL:0000359,3.87e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.21e-18!659;UBERON:0004872!5.84e-15!84;UBERON:0000467!8.73e-15!625;UBERON:0000055!1.13e-14!69;UBERON:0000480!1.73e-14!626;UBERON:0001981!4.87e-14!60;UBERON:0007500!4.87e-14!60;UBERON:0004537!4.87e-14!60;UBERON:0006965!4.87e-14!60;UBERON:0002049!6.34e-14!79;UBERON:0007798!6.34e-14!79;UBERON:0003914!2.19e-13!118;UBERON:0001637!4.15e-12!42;UBERON:0003509!4.15e-12!42;UBERON:0004572!4.15e-12!42;UBERON:0001009!3.30e-10!113;UBERON:0000477!8.77e-10!286;UBERON:0004573!1.37e-09!33;UBERON:0004571!1.37e-09!33;UBERON:0004535!3.37e-09!110;UBERON:0000926!2.58e-08!448;UBERON:0004120!2.58e-08!448;UBERON:0006603!2.58e-08!448;UBERON:0000062!7.75e-08!511;UBERON:0000490!9.61e-08!138;UBERON:0004111!1.07e-07!241;UBERON:0002050!1.70e-07!605;UBERON:0005423!1.70e-07!605;UBERON:0000922!2.14e-07!612;UBERON:0000923!2.81e-07!604;UBERON:0005291!2.81e-07!604;UBERON:0006598!2.81e-07!604;UBERON:0002532!2.81e-07!604;UBERON:0000947!3.49e-07!21;UBERON:0010191!3.49e-07!21;UBERON:0000487!5.46e-07!22;UBERON:0006914!6.85e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.90e-09;42!UBERON:0003509;1.90e-09;42!UBERON:0004572;1.90e-09;42!UBERON:0004573;9.77e-09;33!UBERON:0004571;9.77e-09;33!UBERON:0007500;6.80e-08;56!UBERON:0001981;6.80e-08;56!UBERON:0004537;6.80e-08;56!UBERON:0000055;2.39e-07;65!UBERON:0000947;3.69e-07;21!UBERON:0010191;3.69e-07;21!UBERON:0000490;4.79e-07;33!UBERON:0000487;5.50e-07;22!UBERON:0006914;6.92e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.36e-14,83;UBERON:0000055,2.70e-14,68;UBERON:0007500,1.17e-13,59;UBERON:0001981,1.17e-13,59;UBERON:0004537,1.17e-13,59;UBERON:0006965,1.17e-13,59;UBERON:0002049,1.46e-13,78;UBERON:0007798,1.46e-13,78;UBERON:0003914,3.50e-13,117;UBERON:0001637,4.15e-12,42;UBERON:0003509,4.15e-12,42;UBERON:0004572,4.15e-12,42;UBERON:0001009,6.50e-10,112;UBERON:0004573,1.37e-09,33;UBERON:0004571,1.37e-09,33;UBERON:0004535,6.47e-09,109;UBERON:0005423,9.96e-08,581;UBERON:0004111,1.21e-07,240;UBERON:0000490,1.79e-07,148;UBERON:0000947,3.49e-07,21;UBERON:0010191,3.49e-07,21;UBERON:0002050,3.60e-07,564;UBERON:0000922,3.74e-07,592;UBERON:0000487,5.46e-07,22;UBERON:0006914,6.85e-07,25 | |||
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| ||
|short_description=p1@CTNNA1 | |||
}} | }} |
Latest revision as of 23:27, 24 September 2015
Short description: | p1@CTNNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CTNNA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000302763, ENST00000355078, ENST00000518245, ENST00000518910, ENST00000519309, ENST00000520339, ENST00000521724, ENST00000521941, ENST00000537034, ENST00000541863, NM_001903, uc003ldh.2, uc003ldi.2, uc011cyx.1, uc011cyy.1_5end |
EntrezGene: | CTNNA1 |
HGNC: | 2509 |
UniProt: | P35221F8W845E5RIC3E5RJ41E5RIT8E5RJL0E5RJZ2F6XBD8B4E2G8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.60e-12 | 253 |
embryonic cell | 2.05e-12 | 250 |
mesodermal cell | 2.94e-11 | 121 |
endothelial cell of vascular tree | 2.59e-09 | 24 |
lining cell | 5.26e-08 | 58 |
barrier cell | 5.26e-08 | 58 |
vascular associated smooth muscle cell | 3.87e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 1.36e-14 | 83 |
vessel | 2.70e-14 | 68 |
epithelial tube open at both ends | 1.17e-13 | 59 |
blood vessel | 1.17e-13 | 59 |
blood vasculature | 1.17e-13 | 59 |
vascular cord | 1.17e-13 | 59 |
vasculature | 1.46e-13 | 78 |
vascular system | 1.46e-13 | 78 |
epithelial tube | 3.50e-13 | 117 |
artery | 4.15e-12 | 42 |
arterial blood vessel | 4.15e-12 | 42 |
arterial system | 4.15e-12 | 42 |
circulatory system | 6.50e-10 | 112 |
systemic artery | 1.37e-09 | 33 |
systemic arterial system | 1.37e-09 | 33 |
cardiovascular system | 6.47e-09 | 109 |
developing anatomical structure | 9.96e-08 | 581 |
anatomical conduit | 1.21e-07 | 240 |
unilaminar epithelium | 1.79e-07 | 148 |
aorta | 3.49e-07 | 21 |
aortic system | 3.49e-07 | 21 |
embryonic structure | 3.60e-07 | 564 |
embryo | 3.74e-07 | 592 |
simple squamous epithelium | 5.46e-07 | 22 |
squamous epithelium | 6.85e-07 | 25 |