FFCP PHASE1:Hg19::chr5:114632307..114632381,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:114632307..114632381,- to FFCP PHASE1:Hg19::chr5:114632307..114632381,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=153733 | |EntrezGene=153733 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28599 | |HGNC=28599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000503027_5end | |||
|cluster_id=chr5:114632307..114632381,- | |||
|description=CAGE_peak_1_at_CCDC112_5end | |||
|id=chr5:114632307..114632381,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.97e-07;82 | |||
|ontology_enrichment_disease=DOID:14566!6.44e-09!239;DOID:162!1.15e-08!235;DOID:0050686!1.84e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,6.18e-09,239;DOID:162,1.10e-08,235;DOID:0050686,1.76e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.18e-23!94;UBERON:0001016!4.18e-23!94;UBERON:0001017!4.32e-21!82;UBERON:0005743!1.80e-19!86;UBERON:0000955!9.26e-16!69;UBERON:0006238!9.26e-16!69;UBERON:0001049!1.64e-15!57;UBERON:0005068!1.64e-15!57;UBERON:0006241!1.64e-15!57;UBERON:0007135!1.64e-15!57;UBERON:0003080!2.63e-14!42;UBERON:0002780!4.53e-14!41;UBERON:0001890!4.53e-14!41;UBERON:0006240!4.53e-14!41;UBERON:0002616!1.99e-12!59;UBERON:0002020!9.08e-12!34;UBERON:0003528!9.08e-12!34;UBERON:0001893!1.91e-11!34;UBERON:0002791!1.93e-11!33;UBERON:0002346!2.83e-11!90;UBERON:0000924!3.39e-11!173;UBERON:0006601!3.39e-11!173;UBERON:0001869!6.51e-11!32;UBERON:0004121!1.83e-10!169;UBERON:0003075!1.84e-10!86;UBERON:0007284!1.84e-10!86;UBERON:0007023!3.76e-10!115;UBERON:0000033!3.13e-09!123;UBERON:0000153!5.20e-09!129;UBERON:0007811!5.20e-09!129;UBERON:0003056!5.50e-09!61;UBERON:0000956!2.30e-08!25;UBERON:0000203!2.30e-08!25;UBERON:0002619!1.09e-07!22;UBERON:0001950!6.96e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.82e-10;41!UBERON:0001890;1.82e-10;41!UBERON:0002791;2.15e-10;32!UBERON:0003528;3.96e-10;34!UBERON:0002020;3.96e-10;34!UBERON:0001869;5.10e-10;32!UBERON:0001893;7.88e-10;34!UBERON:0001016;4.28e-09;83!UBERON:0000073;8.66e-09;53!UBERON:0002616;8.66e-09;53!UBERON:0000956;2.45e-08;25!UBERON:0000203;2.45e-08;25!UBERON:0001017;4.35e-08;75!UBERON:0000955;5.15e-08;68!UBERON:0002619;1.17e-07;22!UBERON:0001950;7.34e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.48e-24,89;UBERON:0001017,7.80e-21,81;UBERON:0000955,1.63e-15,68;UBERON:0006238,1.63e-15,68;UBERON:0001049,2.88e-15,56;UBERON:0005068,2.88e-15,56;UBERON:0006241,2.88e-15,56;UBERON:0007135,2.88e-15,56;UBERON:0000073,4.17e-14,53;UBERON:0002616,4.17e-14,53;UBERON:0002780,4.52e-14,41;UBERON:0001890,4.52e-14,41;UBERON:0003080,4.52e-14,41;UBERON:0006240,4.52e-14,41;UBERON:0003528,9.06e-12,34;UBERON:0002020,9.06e-12,34;UBERON:0001893,1.90e-11,34;UBERON:0002791,3.05e-11,32;UBERON:0001869,6.50e-11,32;UBERON:0002346,6.59e-11,86;UBERON:0004121,1.48e-10,171;UBERON:0000924,1.48e-10,171;UBERON:0006601,1.48e-10,171;UBERON:0003075,4.26e-10,82;UBERON:0007284,4.26e-10,82;UBERON:0007023,7.76e-10,114;UBERON:0003056,3.18e-09,61;UBERON:0000956,2.30e-08,25;UBERON:0000203,2.30e-08,25;UBERON:0011216,3.65e-08,223;UBERON:0002619,1.09e-07,22;UBERON:0001950,6.95e-07,20 | |||
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| ||
|short_description=p1@CCDC112 | |||
}} | }} |
Latest revision as of 19:37, 19 September 2015
Short description: | p1@CCDC112 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC112_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000503027_5end |
EntrezGene: | CCDC112 |
HGNC: | 28599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 1.48e-24 | 89 |
central nervous system | 7.80e-21 | 81 |
brain | 1.63e-15 | 68 |
future brain | 1.63e-15 | 68 |
neural tube | 2.88e-15 | 56 |
neural rod | 2.88e-15 | 56 |
future spinal cord | 2.88e-15 | 56 |
neural keel | 2.88e-15 | 56 |
regional part of nervous system | 4.17e-14 | 53 |
regional part of brain | 4.17e-14 | 53 |
regional part of forebrain | 4.52e-14 | 41 |
forebrain | 4.52e-14 | 41 |
anterior neural tube | 4.52e-14 | 41 |
future forebrain | 4.52e-14 | 41 |
brain grey matter | 9.06e-12 | 34 |
gray matter | 9.06e-12 | 34 |
telencephalon | 1.90e-11 | 34 |
regional part of telencephalon | 3.05e-11 | 32 |
cerebral hemisphere | 6.50e-11 | 32 |
neurectoderm | 6.59e-11 | 86 |
ectoderm-derived structure | 1.48e-10 | 171 |
ectoderm | 1.48e-10 | 171 |
presumptive ectoderm | 1.48e-10 | 171 |
neural plate | 4.26e-10 | 82 |
presumptive neural plate | 4.26e-10 | 82 |
adult organism | 7.76e-10 | 114 |
pre-chordal neural plate | 3.18e-09 | 61 |
cerebral cortex | 2.30e-08 | 25 |
pallium | 2.30e-08 | 25 |
organ system subdivision | 3.65e-08 | 223 |
regional part of cerebral cortex | 1.09e-07 | 22 |
neocortex | 6.95e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 6.18e-09 | 239 |
cancer | 1.10e-08 | 235 |
organ system cancer | 1.76e-07 | 137 |