FFCP PHASE1:Hg19::chr4:89513680..89513688,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:89513680..89513688,+ to FFCP PHASE1:Hg19::chr4:89513680..89513688,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8916 | |EntrezGene=8916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4876 | |HGNC=4876 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IXX3,Q15034 | |UniProt=Q8IXX3,Q15034 | ||
|association_with_transcript=33bp_to_ENST00000407637,NM_014606,uc003hrv.2,uc003hrw.1,uc011cdn.1_5end | |||
|cluster_id=chr4:89513680..89513688,+ | |||
|description=CAGE_peak_4_at_HERC3_5end | |||
|id=chr4:89513680..89513688,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.92e-17!42;CL:0000860!2.16e-15!45;CL:0000738!3.18e-15!140;CL:0000766!2.94e-14!76;CL:0002087!5.35e-13!119;CL:0002031!1.70e-12!124;CL:0000557!1.31e-10!71;CL:0000839!2.92e-10!70;CL:0002194!3.39e-10!63;CL:0000576!3.39e-10!63;CL:0000040!3.39e-10!63;CL:0000559!3.39e-10!63;CL:0002009!4.07e-10!65;CL:0000037!2.70e-09!172;CL:0000566!2.70e-09!172;CL:0002032!5.68e-09!165;CL:0000837!5.68e-09!165;CL:0002393!7.79e-08!9;CL:0002397!7.79e-08!9;CL:0000988!8.50e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0000094;8.39e-12;8!CL:0002393;2.03e-11;6!CL:0002397;2.03e-11;6!CL:0000775;2.40e-09;3!CL:0000766;2.70e-09;69!CL:0000576;4.80e-09;48!CL:0000081;2.40e-08;11!CL:0000875;3.12e-08;3!CL:0000623;3.12e-08;3!CL:0002396;3.12e-08;3!CL:0002087;2.44e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.40e-22,136;CL:0000766,2.48e-18,72;CL:0002393,2.70e-18,9;CL:0002397,2.70e-18,9;CL:0000037,8.97e-18,168;CL:0002032,5.72e-17,161;CL:0000837,5.72e-17,161;CL:0000860,1.37e-16,42;CL:0002057,1.37e-16,42;CL:0000988,2.76e-16,177;CL:0002087,6.01e-16,115;CL:0002031,3.16e-15,120;CL:0000473,6.91e-14,48;CL:0000234,6.91e-14,48;CL:0000094,5.33e-12,8;CL:0000763,5.53e-12,108;CL:0000049,5.53e-12,108;CL:0000839,4.37e-11,66;CL:0000557,7.63e-11,67;CL:0002194,3.85e-10,59;CL:0000576,3.85e-10,59;CL:0000040,3.85e-10,59;CL:0000559,3.85e-10,59;CL:0002009,1.16e-09,61;CL:0000775,2.06e-09,3;CL:0000623,9.05e-09,3;CL:0000825,9.05e-09,3;CL:0000875,1.37e-08,3;CL:0002396,1.37e-08,3;CL:0000081,1.74e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;5.25e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.64e-11!102;UBERON:0003061!5.64e-11!102;UBERON:0002193!4.44e-09!112;UBERON:0007023!1.53e-08!115;UBERON:0002371!2.03e-08!80;UBERON:0001474!6.02e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.83e-07;15!UBERON:0000179;3.83e-07;15!UBERON:0000463;3.83e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.61e-12,98;UBERON:0003061,3.61e-12,98;UBERON:0002193,2.11e-10,108;UBERON:0002371,5.76e-09,76;UBERON:0004765,1.30e-08,90;UBERON:0001474,5.94e-08,82;UBERON:0001434,3.21e-07,100;UBERON:0000178,5.89e-07,15;UBERON:0000179,5.89e-07,15;UBERON:0000463,5.89e-07,15 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0.655324116390517,0,0,0.662794751455832,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0,1.96682138424452,1.15148819429164,0.619264493264304,0,0.30120591877825,0,0,0.142169232487422,0,3.32397245119126,2.4065333696417,3.90619567288533,0.223915474239924,0,0,1.30858414901608,0.755751887377619,0.970336244751265,0.464858073811369,0.822335776043652,0.309706370895104,0.863077176966451,0.512321413058201,0.47296445977717,0.344745680736619,1.29096936716765,0,1.31769637679823,0.818718450173537,1.12361742222542,1.53041946185451,0.320929027076094,0.639337125799041,1.31940520074686,0.598390972864896,1.27867425159808,1.16083695451434,0,0,0.251248665256743,1.0429658368404,0.217188844705117,1.21079900526674,0.368277635987565,1.26584954976354,0.845021145247767,2.33864729961548,1.46761051855863,0.786300418025466,0.750884464207532,0.64290234678832,1.71007646244749,1.39241674039363,2.37463399894024,0,1.09227722252426,0.889509253863555,2.98711155796555,0.800791974072025,0,0.661044872784862,0,0.569212969109448,2.34894875748376,1.91136614062614,1.32171328579026,2.24203425192614,0.263384084775077,1.57367816091066,1.17903228824749,2.46721798799411,0.167186495390678,0.977766799900771,1.4203434172042,0,0.111410456885174,0,1.10766947291811,0.541607727530031,0,0.260118695119756,0.493313713811028,0.276350017785848,0,1.03800594213442,1.33770414044857,2.09071047609954,0.226618685395132,0.766440987203842,1.03088233644789,0.253019692019503,0,0.651083453856419,0.950452044448374,0.602300476311091,0.127986611154418,0,0.236777252044017,0,2.62088766192152,2.67440195783507,1.44824403882799,0,0,0.12786256184353,0.722878304769133,0,0.289693037921647,0,0,0.0945348171640679,0,0,0.458426764241994,0,0,0,0.348259474598534,0.398873881556595,0.238490624305342,0,0.371457501329565,0.198762407366705,0,0,0,0.419499436209906,0.550236083880135,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,0,0.225222960966644,0,0.949265659568129,0,10.5424333948851,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0.269421344139376,0,0,0,0,0.624320153660641,0,0,0.117434498643765,0.485618833104395,0.280901613404497,0.408308342509787,0,0,0,0,0,0,0,0.375355559615893,0,0,0,0,0,0.89694817844431,0.213557388818567,0,0.300091096084402,0.103052529238439,0.772921620136887,0.18611685633159,0.168776332241266,0.389748020644795,0.504867548488229,0.276149695926898,0,1.06502877754984,0.302256294682921,0.169560592310488,0.966304265816484,1.63647672354501,0.860413786167011,0.121973706129595,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0.118306800039844,0.337169380156203,0.241011029883482,0.110293972732394,0,0.237270619111097,0,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.301586917234893,0.277765335475589,0,0,0,0,0.234817388471643,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0,2.85569617938061,1.13420077793909,0.806026704325635,0,0,0,0.088048434013226,2.28060927094849,0.864719720501769,3.02981840223312,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0.845302752556,0.26593811658487,0,0,0,0,0,0,0,0.977208552881205,0,0,0,0,0.099972991182057,0,0.502257091432126,0,0,0,0,0.868687840005475,0.205476322550383,0,0,1.57624608161542,1.94064817373566,2.43851768931522,0,1.30139853857622,0.773288812777695,0.167516265334349,1.27587750330633,4.49404214368309,2.99161459204025,3.31532410748828,0,0,0,0,0,0.315404830067869,0.117141414992713,0.300946099727719,0,0,0,0,0.173767228936166,0,0,1.03384013061444,1.07857100409308,0.533637789017222,0.606255142892519,0,0,0.248107807818777,1.07423381301644,0.280660094433074,0.128139149255701,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.164254312027618,0,0.232420756919918,0,0.200506470303285,0.460404944679482,0.918515585316854,0.182091168006717,0.524497659837696,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0.650756789328606,0,0,0.165018999841176,0.574265537996172,0,0,0,0.308097234229289,0.15350367472613,0.551346289938122,0.322260734604821,0,0.0852266274161009,0,0.826424576804891,0.192190067365106,1.02090169995667,0.2023155617111,0.464845549297286,0.62962469366128,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.286249773483982,0,0,0.190630193923825,0,0,0.318203247925937,0,0,0.274537029736055,0,0,0,0,0,0,0,0.409499734223957,0.282810863907425,0,0,0,0,0,0,0.405820753925408,0,0.281695602532241,0,0,0.35667105148125,0,0.422215270595328,0,0,0,0.192444225451024,1.34060455107157,0,0.0941438007767792,1.29151611801369,0,0,0.918893600827838,1.01489521846434,0.764637207142375,1.70894156152249,0.952927101831156,0,4.53931317834902,1.08006287447623,1.58625035258854,0,0,0,0,0.432807638929335,0,0,0,0,1.48171507906718,0,0,0,0,2.50634477090067,0.338583555603207,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0.293016358543788,0,0,0,0.95497793895076,0.296964680832639,1.53580351049616,0.994147647766298,0.562677665642051,0,0,0,0.398495976502139,0.276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| 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| ||
|short_description=p4@HERC3 | |||
}} | }} |
Latest revision as of 07:49, 19 September 2015
Short description: | p4@HERC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HERC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_ENST00000407637, NM_014606, uc003hrv.2, uc003hrw.1, uc011cdn.1_5end |
EntrezGene: | HERC3 |
HGNC: | 4876 |
UniProt: | Q8IXX3Q15034 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.61e-12 | 98 |
blood island | 3.61e-12 | 98 |
hemolymphoid system | 2.11e-10 | 108 |
bone marrow | 5.76e-09 | 76 |
skeletal element | 1.30e-08 | 90 |
bone element | 5.94e-08 | 82 |
skeletal system | 3.21e-07 | 100 |
blood | 5.89e-07 | 15 |
haemolymphatic fluid | 5.89e-07 | 15 |
organism substance | 5.89e-07 | 15 |