FFCP PHASE1:Hg19::chr4:53617723..53617731,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=42970 | |HGNC=42970 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000454756_5end | |||
|cluster_id=chr4:53617723..53617731,- | |||
|coexpression_cluster_id=C1586 | |||
|description=CAGE_peak_5_at_ERVMER34-1_5end | |||
|id=chr4:53617723..53617731,- | |||
|ontology_enrichment_celltype=CL:0000039!8.70e-08!7;CL:0000586!8.70e-08!7;CL:0000313!3.13e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000313;1.88e-50;1!CL:0000039;3.40e-29;7!CL:0000586;3.40e-29;7!CL:0000159;4.90e-26;2!CL:0002253;9.18e-26;2!CL:0002563;1.29e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.42e-50,1;CL:0000039,3.16e-29,7;CL:0000586,3.16e-29,7;CL:0000159,5.56e-26,2;CL:0002253,9.18e-26,2;CL:0002563,1.29e-13,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.12e-09!14;DOID:2152!3.13e-07!1;DOID:0050619!4.43e-07!1;DOID:1357!4.43e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;1.88e-50;1!DOID:3095;4.43e-10;22!DOID:2994;4.43e-10;22!DOID:299;5.60e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,2.42e-50,1;DOID:3095,4.33e-10,22;DOID:2994,4.33e-10,22;DOID:299,5.71e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004911!3.13e-07!1;UBERON:0001764!4.43e-07!1;UBERON:0001825!4.43e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004911;1.88e-50;1!UBERON:0004909;4.90e-26;2!UBERON:0001052;1.29e-13;4!UBERON:0001242;1.29e-13;4!UBERON:0001262;1.29e-13;4!UBERON:0004786;1.29e-13;4!UBERON:0004808;1.29e-13;4!UBERON:0001277;1.29e-13;4!UBERON:0004907;3.60e-11;5!UBERON:0000485;2.35e-08;7!UBERON:0003929;2.35e-08;7!UBERON:0003350;1.80e-07;8!UBERON:0001155;8.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.42e-50,1;UBERON:0004909,5.56e-26,2;UBERON:0001052,1.29e-13,4;UBERON:0001242,1.29e-13,4;UBERON:0001262,1.29e-13,4;UBERON:0004786,1.29e-13,4;UBERON:0004808,1.29e-13,4;UBERON:0001277,1.29e-13,4;UBERON:0004907,3.60e-11,5;UBERON:0003350,1.80e-07,8;UBERON:0001155,8.85e-07,9;UBERON:0000485,8.85e-07,9 | |||
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|short_description=p5@ERVMER34-1 | |||
}} | }} |
Latest revision as of 00:03, 18 September 2015
Short description: | p5@ERVMER34-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ERVMER34-1_5end |
Coexpression cluster: | C1586_choriocarcinoma_serous_maxillary_colon_small_Prostate_H9 |
Association with transcript: | 21bp_to_ENST00000454756_5end |
EntrezGene: | NA |
HGNC: | 42970 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.42e-50 | 1 |
germ line cell | 3.16e-29 | 7 |
germ cell | 3.16e-29 | 7 |
seromucus secreting cell | 5.56e-26 | 2 |
epithelial cell of large intestine | 9.18e-26 | 2 |
intestinal epithelial cell | 1.29e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.42e-50 | 1 |
epithelium of gonad | 5.56e-26 | 2 |
rectum | 1.29e-13 | 4 |
intestinal mucosa | 1.29e-13 | 4 |
wall of intestine | 1.29e-13 | 4 |
gastrointestinal system mucosa | 1.29e-13 | 4 |
gastrointestinal system epithelium | 1.29e-13 | 4 |
intestinal epithelium | 1.29e-13 | 4 |
lower digestive tract | 3.60e-11 | 5 |
epithelium of mucosa | 1.80e-07 | 8 |
colon | 8.85e-07 | 9 |
simple columnar epithelium | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.42e-50 | 1 |
germ cell and embryonal cancer | 4.33e-10 | 22 |
germ cell cancer | 4.33e-10 | 22 |
adenocarcinoma | 5.71e-09 | 25 |