FFCP PHASE1:Hg19::chr4:17579145..17579154,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:17579145..17579154,+ to FFCP PHASE1:Hg19::chr4:17579145..17579154,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51056 | |EntrezGene=51056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18449 | |HGNC=18449 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=70bp_to_ENST00000512397_5end | |||
|cluster_id=chr4:17579145..17579154,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_4_at_LAP3_5end | |||
|id=chr4:17579145..17579154,+ | |||
|ontology_enrichment_celltype=CL:0000034!2.55e-12!444;CL:0000048!8.51e-11!430;CL:0000723!1.41e-10!436;CL:0000144!1.22e-09!625;CL:0002371!2.51e-08!591;CL:0002087!3.21e-07!119;CL:0000134!5.64e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.22e-07;33!CL:0002057;3.22e-07;33!CL:0000473;9.21e-07;39!CL:0000234;9.21e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,1.07e-14,441;CL:0000048,5.88e-13,427;CL:0000723,1.15e-12,433;CL:0000134,3.64e-09,354;CL:0002087,5.24e-09,115;CL:0002320,1.35e-08,361;CL:0000738,2.36e-08,136;CL:0000219,2.63e-08,386;CL:0002194,5.14e-08,59;CL:0000576,5.14e-08,59;CL:0000040,5.14e-08,59;CL:0000559,5.14e-08,59;CL:0002009,8.95e-08,61;CL:0000473,1.13e-07,48;CL:0000234,1.13e-07,48;CL:0000860,2.84e-07,42;CL:0002057,2.84e-07,42;CL:0000557,3.27e-07,67;CL:0002031,3.66e-07,120;CL:0000037,7.32e-07,168;CL:0002032,7.37e-07,161;CL:0000837,7.37e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,3.81e-08,315;UBERON:0004120,3.81e-08,315;UBERON:0006603,3.81e-08,315;UBERON:0002405,3.89e-08,93;UBERON:0002384,5.02e-08,371;UBERON:0003081,5.57e-07,203;UBERON:0002371,6.43e-07,76;UBERON:0004765,7.73e-07,90 | |||
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| ||
|short_description=p4@LAP3 | |||
}} | }} |
Latest revision as of 21:09, 16 September 2015
Short description: | p4@LAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAP3_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 70bp_to_ENST00000512397_5end |
EntrezGene: | LAP3 |
HGNC: | 18449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 1.07e-14 | 441 |
multi fate stem cell | 5.88e-13 | 427 |
somatic stem cell | 1.15e-12 | 433 |
mesenchymal cell | 3.64e-09 | 354 |
nongranular leukocyte | 5.24e-09 | 115 |
connective tissue cell | 1.35e-08 | 361 |
leukocyte | 2.36e-08 | 136 |
motile cell | 2.63e-08 | 386 |
monopoietic cell | 5.14e-08 | 59 |
monocyte | 5.14e-08 | 59 |
monoblast | 5.14e-08 | 59 |
promonocyte | 5.14e-08 | 59 |
macrophage dendritic cell progenitor | 8.95e-08 | 61 |
defensive cell | 1.13e-07 | 48 |
phagocyte | 1.13e-07 | 48 |
classical monocyte | 2.84e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.84e-07 | 42 |
granulocyte monocyte progenitor cell | 3.27e-07 | 67 |
hematopoietic lineage restricted progenitor cell | 3.66e-07 | 120 |
hematopoietic stem cell | 7.32e-07 | 168 |
hematopoietic oligopotent progenitor cell | 7.37e-07 | 161 |
hematopoietic multipotent progenitor cell | 7.37e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 3.81e-08 | 315 |
mesoderm-derived structure | 3.81e-08 | 315 |
presumptive mesoderm | 3.81e-08 | 315 |
immune system | 3.89e-08 | 93 |
connective tissue | 5.02e-08 | 371 |
lateral plate mesoderm | 5.57e-07 | 203 |
bone marrow | 6.43e-07 | 76 |
skeletal element | 7.73e-07 | 90 |