FFCP PHASE1:Hg19::chr4:141348763..141348776,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:141348763..141348776,- to FFCP PHASE1:Hg19::chr4:141348763..141348776,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1047 | |EntrezGene=1047 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2060 | |HGNC=2060 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAZ4 | |UniProt=D6RAZ4 | ||
|association_with_transcript=0bp_to_ENST00000509477_5end | |||
|cluster_id=chr4:141348763..141348776,- | |||
|description=CAGE_peak_2_at_CLGN_5end | |||
|id=chr4:141348763..141348776,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,5.90e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.95e-07!239;DOID:0050687!3.82e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:169;3.12e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,3.56e-07,6;DOID:14566,3.91e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.11e-16!94;UBERON:0001016!3.11e-16!94;UBERON:0002346!2.24e-14!90;UBERON:0005743!1.26e-13!86;UBERON:0003075!2.13e-13!86;UBERON:0007284!2.13e-13!86;UBERON:0001017!8.70e-13!82;UBERON:0000481!1.08e-12!347;UBERON:0001049!2.31e-12!57;UBERON:0005068!2.31e-12!57;UBERON:0006241!2.31e-12!57;UBERON:0007135!2.31e-12!57;UBERON:0000483!4.21e-11!309;UBERON:0000119!1.51e-10!312;UBERON:0003056!2.05e-10!61;UBERON:0000955!2.39e-10!69;UBERON:0006238!2.39e-10!69;UBERON:0002780!2.94e-10!41;UBERON:0001890!2.94e-10!41;UBERON:0006240!2.94e-10!41;UBERON:0000922!3.98e-10!612;UBERON:0002616!8.04e-10!59;UBERON:0003080!1.05e-09!42;UBERON:0000475!1.09e-09!365;UBERON:0000025!1.13e-09!194;UBERON:0002050!1.57e-09!605;UBERON:0005423!1.57e-09!605;UBERON:0000468!1.67e-09!659;UBERON:0000923!2.23e-09!604;UBERON:0005291!2.23e-09!604;UBERON:0006598!2.23e-09!604;UBERON:0002532!2.23e-09!604;UBERON:0000924!2.34e-09!173;UBERON:0006601!2.34e-09!173;UBERON:0000480!4.75e-09!626;UBERON:0000467!6.67e-09!625;UBERON:0004121!1.28e-08!169;UBERON:0000477!1.70e-08!286;UBERON:0000062!3.14e-08!511;UBERON:0004111!3.90e-08!241;UBERON:0002020!4.07e-08!34;UBERON:0003528!4.07e-08!34;UBERON:0001893!1.95e-07!34;UBERON:0001869!2.04e-07!32;UBERON:0002791!2.97e-07!33;UBERON:0000956!3.49e-07!25;UBERON:0000203!3.49e-07!25;UBERON:0007023!6.05e-07!115;UBERON:0000033!9.50e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000010;1.17e-07;8!UBERON:0007625;5.82e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,5.08e-08,82;UBERON:0007284,5.08e-08,82;UBERON:0000010,1.14e-07,8;UBERON:0002346,2.73e-07,86;UBERON:0007625,5.89e-07,11 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0.631719873426831,0,0.491467873003018,0,0,0,5.69325223616215,1.32558950291166,0.672325146451775,0,0.730310090387373,0,0.123121058076788,0.204000691244253,0,2.0036519099174,1.64249310087461,1.12988375635323,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0.587200878669695,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,3.30871860074237,1.33037638477538,1.40535657109002,3.66741411393595,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0.775250277507987,0,1.00416183829401,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,0.183201743930407,0,0,0,0,0,0.794455084879313,0.573673241497627,0.709336764396714,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0.587172493218824,0.161872944368132,0.280901613404497,0.204154171254893,0.982674538494144,0.826606249406124,0,0,0,0,0,0.375355559615893,1.10825646193673,0.438977620880838,0,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0,0.412210116953756,0.257640540045629,0,0.843881661206331,0.0974370051611986,0,0.184099797284599,0,0,0,0,0,0,0,0.121973706129595,0.397589304964456,0.464775771478074,0.829288440122964,0,0,0,1.92972281457866,0,0,0,0.236613600079688,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,3.80265104465493,0.982827216677626,1.77236972004421,0,0.368965315629341,2.91665277507493,0,0,0,0,0,0,0,5.56465943880369,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,1.02738161275192,0.358121926479791,0,0,0,0,1.01637849688985,1.30139853857622,1.54657762555539,1.67516265334349,0.637938751653163,0,0,0,4.04881922673162,0,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0,1.04260337361699,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.128139149255701,0,0,0,0.462629081407967,0,2.95657761649713,0.519254429183621,0.813472649219715,0.483437798366489,0,3.31491560169227,0.803701137152247,0.182091168006717,0.393373244878272,0,0.770153371044148,0.784349769176855,0,1.05551628892876,0,0,0.215915916102139,1.54227252690289,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,3.59030175162945,0,2.27764876265012,0.103041011647722,3.66277859273374,6.35323149388527,0,0,0,1.64340221096607,0,0,0.275673144969061,0.429680979473094,0,0.170453254832202,0.0890320356467374,0.661139661443912,0.768760269460425,0,3.54052232994425,0,1.88887408098384,1.3940745403212,0,0,1.73986598415015,0.74129687641568,0.286249773483982,0,0,0.190630193923825,0.255897791311334,0.855877976067841,0,0.78494864019923,0.359744915166629,1.09814811894422,0.353437207037059,0,0,0.842516912477962,0,0.487426979262569,1.05650146756755,0.409499734223957,0.424216295861138,0,0,0,0.876901770507525,0,0.655894752046633,0.608731130888112,0,0.281695602532241,0.143411352204052,0,0.7133421029625,4.25713276884717,2.53329162357197,0.329294892959902,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.961416640147258,7.69983884210687,0,0,0,4.0550850708596,1.11598390910176,0,0,0,0.973865820823666,1.68478306868075,0,0,2.50634477090067,0,0,0,0,0,2.15068535015921,2.01308497103174,1.33479313369527,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0.485442086998054,0,0.568272293612826,0,0,0,0.994147647766298,0.844016498463076,6.45590489132854,0,0.844501632511974,0,0,3.77899121781414,1.32949287252801,0.123084805461069,0,0,3.75944466818779,0,0.197286811273867,0,0,0,0.834912883456661,0,0.260427761085233,0.61221999997337,0,0.227586896570999,0.508507300585533,0.236387681767936,7.58435421131222,1.45802306691627,1.04174996959975,0.885741385813839,0.241192877250816,0,3.75969483766164,2.95547618953547,0.87754158861589,1.30726156222788,0.697118721393016,0.153900517007594,0.569710279235006,0.69169171316418,1.16684937732704,0.217294743844016,0,0,0,3.06579894587209,0,0.498635045700469,0,0,0,0,0.476809736941136,0,0,0,3.02944095638928,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0.937057782901357,0.364909578431332,0.586993856796269,1.94224303627274,0,0,0.91821828489147,0.063186579628488,0.60129367765797,0.829505531177977,2.65861549082874,0.992975867626496,2.5114633472578,1.19472429772959,1.42304773014896,0,0,0,0,0.52418000472609,0,0,0.219267951258557,0.0821154570532092,0.0969890164884194,0.882561266915003,1.35588444468319,0,0.19871461170299,1.64608069485285,0.391102765469606,2.72539988855215,0,1.19885765749278,3.74635084600676,0.114536596165916,9.78091487813198,9.36356186922973,1.11827282008889,2.12124631155116,0,0.104602846312333,0.203996435272644,2.31160471921215,0,0.136905378891993,0,0,0,7.26134243307861,7.79145441639724,5.0251111720377,5.79069101447074,7.2968428183217,15.3988305634892,10.547805180416,0,0,2.52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| 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| ||
|short_description=p2@CLGN | |||
}} | }} |
Latest revision as of 19:37, 15 September 2015
Short description: | p2@CLGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CLGN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000509477_5end |
EntrezGene: | CLGN |
HGNC: | 2060 |
UniProt: | D6RAZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 5.90e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
neural plate | 5.08e-08 | 82 |
presumptive neural plate | 5.08e-08 | 82 |
peripheral nervous system | 1.14e-07 | 8 |
neurectoderm | 2.73e-07 | 86 |
pigment epithelium of eye | 5.89e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 3.56e-07 | 6 |
disease of cellular proliferation | 3.91e-07 | 239 |