FFCP PHASE1:Hg19::chr4:119757239..119757305,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:119757239..119757305,- to FFCP PHASE1:Hg19::chr4:119757239..119757305,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9871 | |EntrezGene=9871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10706 | |HGNC=10706 | ||
|TSSclassifier=strong | |||
|UniProt=O94855 | |UniProt=O94855 | ||
|association_with_transcript=0bp_to_ENST00000280551_5end | |||
|cluster_id=chr4:119757239..119757305,- | |||
|coexpression_cluster_id=C1465 | |||
|description=CAGE_peak_1_at_SEC24D_5end | |||
|id=chr4:119757239..119757305,- | |||
|ontology_enrichment_celltype=CL:0000055!5.60e-28!180;CL:0000048!1.30e-26!430;CL:0000723!6.67e-25!436;CL:0002371!2.14e-24!591;CL:0000034!2.79e-23!444;CL:0000144!5.16e-22!625;CL:0000057!1.03e-20!75;CL:0000680!1.05e-14!57;CL:0000056!1.05e-14!57;CL:0000355!1.05e-14!57;CL:0000548!3.45e-14!679;CL:0000004!3.45e-14!679;CL:0000255!3.45e-14!679;CL:0002320!4.31e-14!365;CL:0000187!4.52e-14!54;CL:0000012!1.31e-13!682;CL:0000134!1.95e-13!358;CL:0000183!8.24e-13!59;CL:0000192!4.88e-12!42;CL:0000514!4.88e-12!42;CL:0000222!1.30e-11!119;CL:0000359!6.89e-11!32;CL:0000393!1.04e-10!60;CL:0000211!1.04e-10!60;CL:0000219!6.13e-10!390;CL:0002620!2.07e-09!23;CL:0002334!4.54e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.01e-10;32!CL:0002620;2.04e-09;23!CL:0000134;3.50e-09;55!CL:0000192;6.01e-09;43!CL:0000057;1.06e-08;73!CL:0000187;3.13e-08;55!CL:0000048;7.41e-08;58!CL:0000723;9.79e-08;61!CL:0000860;1.86e-07;33!CL:0002057;1.86e-07;33!CL:0002334;4.57e-07;12!CL:0002320;9.43e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,6.64e-28,427;CL:0000723,3.81e-26,433;CL:0000034,1.78e-24,441;CL:0000057,2.69e-21,76;CL:0002320,6.04e-15,361;CL:0000680,9.98e-15,58;CL:0000056,9.98e-15,58;CL:0000355,9.98e-15,58;CL:0000134,2.85e-14,354;CL:0000187,4.29e-14,55;CL:0000192,4.77e-12,43;CL:0000514,4.77e-12,43;CL:0000222,1.16e-11,121;CL:0000359,6.89e-11,32;CL:0000393,9.21e-11,61;CL:0000211,9.21e-11,61;CL:0000219,1.28e-10,386;CL:0002620,2.07e-09,23;CL:0002334,4.54e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;6.01e-09;43!CL:0000355;4.83e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.49e-20!167;UBERON:0000926!1.57e-17!448;UBERON:0004120!1.57e-17!448;UBERON:0006603!1.57e-17!448;UBERON:0000914!3.24e-16!83;UBERON:0002329!3.24e-16!83;UBERON:0003077!3.24e-16!83;UBERON:0003059!3.24e-16!83;UBERON:0007282!3.24e-16!83;UBERON:0009618!3.24e-16!83;UBERON:0007285!3.24e-16!83;UBERON:0004872!8.48e-15!84;UBERON:0002384!1.10e-14!375;UBERON:0004290!1.47e-14!70;UBERON:0002049!3.64e-14!79;UBERON:0007798!3.64e-14!79;UBERON:0005256!5.63e-14!143;UBERON:0003081!8.85e-14!216;UBERON:0000486!1.60e-13!82;UBERON:0002385!1.85e-13!63;UBERON:0001015!1.85e-13!63;UBERON:0000383!1.85e-13!63;UBERON:0001134!3.68e-13!61;UBERON:0002036!3.68e-13!61;UBERON:0003082!3.68e-13!61;UBERON:0000055!2.76e-12!69;UBERON:0003914!8.12e-12!118;UBERON:0004535!8.66e-12!110;UBERON:0001981!9.99e-12!60;UBERON:0007500!9.99e-12!60;UBERON:0004537!9.99e-12!60;UBERON:0006965!9.99e-12!60;UBERON:0001637!1.08e-11!42;UBERON:0003509!1.08e-11!42;UBERON:0004572!1.08e-11!42;UBERON:0001009!3.52e-11!113;UBERON:0000490!1.21e-10!138;UBERON:0004573!1.30e-10!33;UBERON:0004571!1.30e-10!33;UBERON:0000468!6.99e-10!659;UBERON:0000480!1.50e-08!626;UBERON:0000467!2.32e-08!625;UBERON:0002100!5.42e-08!216;UBERON:0004765!3.05e-07!101;UBERON:0001434!3.05e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.27e-09;33!UBERON:0004571;1.27e-09;33!UBERON:0001637;1.51e-08;42!UBERON:0003509;1.51e-08;42!UBERON:0004572;1.51e-08;42!UBERON:0002384;7.26e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.81e-26,315;UBERON:0004120,9.81e-26,315;UBERON:0006603,9.81e-26,315;UBERON:0002204,4.86e-22,167;UBERON:0003081,1.04e-15,203;UBERON:0002384,1.51e-15,371;UBERON:0002329,1.33e-14,71;UBERON:0003059,1.33e-14,71;UBERON:0007282,1.33e-14,71;UBERON:0004290,1.33e-14,71;UBERON:0009618,1.33e-14,71;UBERON:0007524,2.56e-14,73;UBERON:0004872,2.66e-14,83;UBERON:0003077,5.50e-14,72;UBERON:0007285,5.50e-14,72;UBERON:0005256,6.81e-14,122;UBERON:0002049,1.14e-13,78;UBERON:0007798,1.14e-13,78;UBERON:0000486,1.39e-13,83;UBERON:0002385,1.68e-13,64;UBERON:0001015,1.68e-13,64;UBERON:0000383,1.68e-13,64;UBERON:0007503,1.75e-13,78;UBERON:0001134,3.35e-13,62;UBERON:0002036,3.35e-13,62;UBERON:0003082,3.35e-13,62;UBERON:0003104,2.46e-12,160;UBERON:0009142,2.46e-12,160;UBERON:0000490,4.29e-12,148;UBERON:0000055,8.45e-12,68;UBERON:0003914,9.70e-12,117;UBERON:0001637,1.08e-11,42;UBERON:0003509,1.08e-11,42;UBERON:0004572,1.08e-11,42;UBERON:0004535,2.27e-11,109;UBERON:0007500,3.13e-11,59;UBERON:0001981,3.13e-11,59;UBERON:0004537,3.13e-11,59;UBERON:0006965,3.13e-11,59;UBERON:0001009,8.95e-11,112;UBERON:0004573,1.30e-10,33;UBERON:0004571,1.30e-10,33;UBERON:0000479,1.94e-08,773;UBERON:0001434,2.27e-08,100;UBERON:0002100,4.31e-07,199;UBERON:0004765,6.60e-07,90 | |||
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138 | ||
|short_description=p1@SEC24D | |||
}} | }} |
Latest revision as of 21:23, 24 September 2015
Short description: | p1@SEC24D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC24D_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 0bp_to_ENST00000280551_5end |
EntrezGene: | SEC24D |
HGNC: | 10706 |
UniProt: | O94855 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 6.64e-28 | 427 |
somatic stem cell | 3.81e-26 | 433 |
stem cell | 1.78e-24 | 441 |
fibroblast | 2.69e-21 | 76 |
connective tissue cell | 6.04e-15 | 361 |
muscle precursor cell | 9.98e-15 | 58 |
myoblast | 9.98e-15 | 58 |
multi-potent skeletal muscle stem cell | 9.98e-15 | 58 |
mesenchymal cell | 2.85e-14 | 354 |
muscle cell | 4.29e-14 | 55 |
smooth muscle cell | 4.77e-12 | 43 |
smooth muscle myoblast | 4.77e-12 | 43 |
mesodermal cell | 1.16e-11 | 121 |
vascular associated smooth muscle cell | 6.89e-11 | 32 |
electrically responsive cell | 9.21e-11 | 61 |
electrically active cell | 9.21e-11 | 61 |
motile cell | 1.28e-10 | 386 |
skin fibroblast | 2.07e-09 | 23 |
preadipocyte | 4.54e-07 | 12 |