FFCP PHASE1:Hg19::chr4:102268628..102268693,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:102268628..102268693,- to FFCP PHASE1:Hg19::chr4:102268628..102268693,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5530 | |EntrezGene=5530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9314 | |HGNC=9314 | ||
|TSSclassifier=strong | |||
|UniProt=A8W6Z7,Q08209,A8W6Z8 | |UniProt=A8W6Z7,Q08209,A8W6Z8 | ||
|association_with_transcript=0bp_to_ENST00000323055,ENST00000394854,ENST00000512215,NM_000944,NM_001130691,NM_001130692,uc003hvs.2,uc003hvt.2,uc003hvu.2,uc010ilj.2,uc010ilk.2,uc011cen.1_5end | |||
|cluster_id=chr4:102268628..102268693,- | |||
|description=CAGE_peak_1_at_PPP3CA_5end | |||
|id=chr4:102268628..102268693,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.99e-22!115;UBERON:0001869!1.34e-10!32;UBERON:0001893!2.32e-10!34;UBERON:0002619!2.78e-10!22;UBERON:0002791!7.55e-10!33;UBERON:0003080!7.61e-10!42;UBERON:0002020!1.14e-09!34;UBERON:0003528!1.14e-09!34;UBERON:0002780!1.44e-09!41;UBERON:0001890!1.44e-09!41;UBERON:0006240!1.44e-09!41;UBERON:0001049!1.50e-09!57;UBERON:0005068!1.50e-09!57;UBERON:0006241!1.50e-09!57;UBERON:0007135!1.50e-09!57;UBERON:0001950!2.24e-09!20;UBERON:0002616!5.93e-09!59;UBERON:0000955!6.13e-08!69;UBERON:0006238!6.13e-08!69;UBERON:0000956!2.71e-07!25;UBERON:0000203!2.71e-07!25;UBERON:0000153!2.79e-07!129;UBERON:0007811!2.79e-07!129;UBERON:0000033!5.80e-07!123;UBERON:0001017!8.02e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.59e-10;22!UBERON:0001869;1.84e-09;32!UBERON:0001950;2.11e-09;20!UBERON:0001893;2.99e-09;34!UBERON:0002791;6.09e-09;32!UBERON:0003528;1.79e-08;34!UBERON:0002020;1.79e-08;34!UBERON:0002780;1.96e-07;41!UBERON:0001890;1.96e-07;41!UBERON:0000956;2.50e-07;25!UBERON:0000203;2.50e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.32e-21,114;UBERON:0001869,1.34e-10,32;UBERON:0001893,2.32e-10,34;UBERON:0002619,2.78e-10,22;UBERON:0002791,7.45e-10,32;UBERON:0003528,1.14e-09,34;UBERON:0002020,1.14e-09,34;UBERON:0002780,1.44e-09,41;UBERON:0001890,1.44e-09,41;UBERON:0003080,1.44e-09,41;UBERON:0006240,1.44e-09,41;UBERON:0001950,2.24e-09,20;UBERON:0001049,2.75e-09,56;UBERON:0005068,2.75e-09,56;UBERON:0006241,2.75e-09,56;UBERON:0007135,2.75e-09,56;UBERON:0000073,2.92e-09,53;UBERON:0002616,2.92e-09,53;UBERON:0000955,1.05e-07,68;UBERON:0006238,1.05e-07,68;UBERON:0000479,2.01e-07,773;UBERON:0000956,2.71e-07,25;UBERON:0000203,2.71e-07,25 | |||
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| ||
|short_description=p1@PPP3CA | |||
}} | }} |
Latest revision as of 03:17, 20 September 2015
Short description: | p1@PPP3CA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPP3CA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000323055, ENST00000394854, ENST00000512215, NM_000944, NM_001130691, NM_001130692, uc003hvs.2, uc003hvt.2, uc003hvu.2, uc010ilj.2, uc010ilk.2, uc011cen.1_5end |
EntrezGene: | PPP3CA |
HGNC: | 9314 |
UniProt: | A8W6Z7Q08209A8W6Z8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.32e-21 | 114 |
cerebral hemisphere | 1.34e-10 | 32 |
telencephalon | 2.32e-10 | 34 |
regional part of cerebral cortex | 2.78e-10 | 22 |
regional part of telencephalon | 7.45e-10 | 32 |
brain grey matter | 1.14e-09 | 34 |
gray matter | 1.14e-09 | 34 |
regional part of forebrain | 1.44e-09 | 41 |
forebrain | 1.44e-09 | 41 |
anterior neural tube | 1.44e-09 | 41 |
future forebrain | 1.44e-09 | 41 |
neocortex | 2.24e-09 | 20 |
neural tube | 2.75e-09 | 56 |
neural rod | 2.75e-09 | 56 |
future spinal cord | 2.75e-09 | 56 |
neural keel | 2.75e-09 | 56 |
regional part of nervous system | 2.92e-09 | 53 |
regional part of brain | 2.92e-09 | 53 |
brain | 1.05e-07 | 68 |
future brain | 1.05e-07 | 68 |
tissue | 2.01e-07 | 773 |
cerebral cortex | 2.71e-07 | 25 |
pallium | 2.71e-07 | 25 |