FFCP PHASE1:Hg19::chr3:55002159..55002164,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:55002159..55002164,+ | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr3:55002159..55002164,+ | |||
|id=chr3:55002159..55002164,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.76e-21!112;CL:0000049!1.76e-21!112;CL:0002194!7.44e-21!63;CL:0000576!7.44e-21!63;CL:0000040!7.44e-21!63;CL:0000559!7.44e-21!63;CL:0000766!9.83e-21!76;CL:0002009!5.43e-20!65;CL:0000839!1.43e-19!70;CL:0000557!3.44e-19!71;CL:0002057!3.17e-18!42;CL:0000860!1.21e-16!45;CL:0000988!2.69e-16!182;CL:0000037!5.28e-16!172;CL:0000566!5.28e-16!172;CL:0002032!3.80e-14!165;CL:0000837!3.80e-14!165;CL:0000738!6.59e-13!140;CL:0002087!2.60e-12!119;CL:0002031!1.51e-10!124;CL:0002320!1.59e-10!365;CL:0000134!2.07e-10!358;CL:0000219!2.39e-09!390;CL:0002619!4.89e-08!3;CL:0000048!2.37e-07!430;CL:0000723!4.68e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000342;4.22e-21;1!CL:0002565;4.22e-21;1!CL:0000322;4.52e-08;3!CL:0002541;6.34e-08;3!CL:0000346;6.34e-08;3!CL:1000428;6.34e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000342,1.88e-21,1;CL:0002565,1.88e-21,1;CL:0000322,4.52e-08,3;CL:0000346,5.18e-08,3;CL:1000428,5.18e-08,3;CL:0002541,7.26e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!1.08e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:3910;1.82e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,1.82e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.57e-22!102;UBERON:0003061!1.57e-22!102;UBERON:0002193!1.24e-19!112;UBERON:0002371!3.12e-19!80;UBERON:0001474!2.47e-17!86;UBERON:0004765!7.01e-16!101;UBERON:0001434!7.01e-16!101;UBERON:0002405!5.15e-11!115;UBERON:0002384!1.86e-10!375;UBERON:0002204!8.72e-08!167;UBERON:0003081!1.72e-07!216;UBERON:0000178!6.92e-07!15;UBERON:0000179!6.92e-07!15;UBERON:0000463!6.92e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002506;4.22e-21;1!UBERON:0001769;4.22e-21;1!UBERON:0004903;1.82e-11;2!UBERON:0002173;1.82e-11;2!UBERON:0002186;1.82e-11;2!UBERON:0007625;3.62e-08;11!UBERON:0004821;4.52e-08;3!UBERON:0007499;4.52e-08;3!UBERON:0003215;4.52e-08;3!UBERON:0010368;4.52e-08;3!UBERON:0009911;4.52e-08;3!UBERON:0002299;4.52e-08;3!UBERON:0006524;4.52e-08;3!UBERON:0008874;4.52e-08;3!UBERON:0002169;4.52e-08;3!UBERON:0004894;4.52e-08;3!UBERON:0000412;6.34e-08;3!UBERON:0003124;6.34e-08;3!UBERON:0000920;6.34e-08;3!UBERON:0001992;6.34e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002506,1.88e-21,1;UBERON:0001769,1.88e-21,1;UBERON:0004903,1.82e-11,2;UBERON:0002173,1.82e-11,2;UBERON:0002186,1.82e-11,2;UBERON:0007625,3.03e-08,11;UBERON:0004821,4.52e-08,3;UBERON:0003215,4.52e-08,3;UBERON:0010368,4.52e-08,3;UBERON:0009911,4.52e-08,3;UBERON:0002299,4.52e-08,3;UBERON:0006524,4.52e-08,3;UBERON:0008874,4.52e-08,3;UBERON:0002169,4.52e-08,3;UBERON:0004894,4.52e-08,3;UBERON:0000412,5.18e-08,3;UBERON:0001992,5.18e-08,3;UBERON:0000920,7.26e-08,3 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0.383829398097213,0.77408061658038,0,0,0,0,0,0,0,0,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,0.145398238779565,0.377875943688809,0.485168122375632,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0.188242339542605,0.545812300115692,0,0,0,0.639337125799041,0,0.598390972864896,0,0,0.56738522469114,0,0.251248665256743,0.521482918420201,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.212604299965044,0,0.44931452458598,0.300353785683013,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.351339142772504,0,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88724591328378,0,0,0,0,0,0,1.44331342025273,0,0.70445216541493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0.87192013766656,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.206768026122887,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313359791546046,0,0,0.1605880751037,0,0,1.37402137902306,0.921722292925374,0.223676107892416,1.00109485027145,0.781552381608161,0,0,0,0,1.4098700508785,0,0,0,0,5.68272293612826,0,0,0,0,0,0,1.48323486804084,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,1.06606955203727,0,0,0.332423363800313,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0.568209015825267,0,0,0,0,0,0,0,0,0,0,0,1.04349012362347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533458648470704,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:55002159..55002164,+ | |||
}} | }} |
Latest revision as of 22:42, 29 July 2015
Short description: | p@chr3:55002159..55002164, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55002159..55002164, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell (sensu Vertebrata) | 1.88e-21 | 1 |
iris pigment epithelial cell | 1.88e-21 | 1 |
pneumocyte | 4.52e-08 | 3 |
hair follicle dermal papilla cell | 5.18e-08 | 3 |
stem cell of epidermis | 5.18e-08 | 3 |
chorionic membrane mesenchymal stem cell | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
iris epithelium | 1.88e-21 | 1 |
iris | 1.88e-21 | 1 |
bronchoalveolar duct junction | 1.82e-11 | 2 |
alveolar duct | 1.82e-11 | 2 |
bronchiole | 1.82e-11 | 2 |
pigment epithelium of eye | 3.03e-08 | 11 |
pulmonary alveolus epithelium | 4.52e-08 | 3 |
alveolus | 4.52e-08 | 3 |
pulmonary lobule | 4.52e-08 | 3 |
lobule | 4.52e-08 | 3 |
alveolus of lung | 4.52e-08 | 3 |
alveolar system | 4.52e-08 | 3 |
pulmonary acinus | 4.52e-08 | 3 |
alveolar sac | 4.52e-08 | 3 |
alveolar wall | 4.52e-08 | 3 |
dermal papilla | 5.18e-08 | 3 |
papillary layer of dermis | 5.18e-08 | 3 |
egg chorion | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 1.82e-11 | 2 |