FFCP PHASE1:Hg19::chr3:197585687..197585697,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84859 | |EntrezGene=84859 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28637 | |HGNC=28637 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471667,ENST00000473177,ENST00000483442_5end | |||
|cluster_id=chr3:197585687..197585697,+ | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_3_at_LRCH3_5end | |||
|id=chr3:197585687..197585697,+ | |||
|ontology_enrichment_celltype=CL:0000990!1.90e-30!8;CL:0000451!9.46e-25!10;CL:0000453!1.14e-18!5;CL:0000840!2.61e-15!5;CL:0001029!2.61e-15!5;CL:0000080!3.14e-09!6;CL:0000540!8.36e-09!6;CL:0000031!8.36e-09!6;CL:0000404!8.36e-09!6;CL:0000039!2.21e-07!7;CL:0000586!2.21e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000990;3.97e-61;8!CL:0000451;4.15e-50;10!CL:0000453;1.30e-40;5!CL:0000840;1.52e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000990,2.73e-61,8;CL:0000451,3.06e-50,10;CL:0000453,1.30e-40,5;CL:0000840,1.22e-15,5;CL:0001029,1.22e-15,5;CL:0000988,1.04e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!2.67e-12!15;UBERON:0003057!2.67e-12!15;UBERON:0001017!3.16e-08!82;UBERON:0002240!3.17e-08!3;UBERON:0000073!5.51e-08!94;UBERON:0001016!5.51e-08!94;UBERON:0005743!9.70e-08!86;UBERON:0001049!1.69e-07!57;UBERON:0005068!1.69e-07!57;UBERON:0006241!1.69e-07!57;UBERON:0007135!1.69e-07!57;UBERON:0004733!3.23e-07!12;UBERON:0002028!3.23e-07!12;UBERON:0007277!3.23e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;2.18e-20;10!UBERON:0000178;7.67e-14;15!UBERON:0000179;7.67e-14;15!UBERON:0000463;7.67e-14;15!UBERON:0000478;6.75e-09;24!UBERON:0000922;1.38e-07;49!UBERON:0002390;6.83e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,2.33e-20,10;UBERON:0000358,2.33e-20,10;UBERON:0000307,2.33e-20,10;UBERON:0000091,2.33e-20,10;UBERON:0000087,2.33e-20,10;UBERON:0007010,2.33e-20,10;UBERON:0007806,2.33e-20,10;UBERON:0008780,2.33e-20,10;UBERON:0005728,2.33e-20,10;UBERON:0000178,8.02e-14,15;UBERON:0000179,8.02e-14,15;UBERON:0000463,8.02e-14,15;UBERON:0000478,6.93e-09,24 | |||
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|short_description=p3@LRCH3 | |||
}} | }} |
Latest revision as of 17:34, 17 September 2015
Short description: | p3@LRCH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LRCH3_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 0bp_to_ENST00000471667, ENST00000473177, ENST00000483442_5end |
EntrezGene: | LRCH3 |
HGNC: | 28637 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
conventional dendritic cell | 2.73e-61 | 8 |
dendritic cell | 3.06e-50 | 10 |
Langerhans cell | 1.30e-40 | 5 |
immature conventional dendritic cell | 1.22e-15 | 5 |
common dendritic progenitor | 1.22e-15 | 5 |
hematopoietic cell | 1.04e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 2.33e-20 | 10 |
blastocyst | 2.33e-20 | 10 |
blastula | 2.33e-20 | 10 |
bilaminar disc | 2.33e-20 | 10 |
inner cell mass | 2.33e-20 | 10 |
cleaving embryo | 2.33e-20 | 10 |
connecting stalk | 2.33e-20 | 10 |
inner cell mass derived epiblast | 2.33e-20 | 10 |
extraembryonic mesoderm | 2.33e-20 | 10 |
blood | 8.02e-14 | 15 |
haemolymphatic fluid | 8.02e-14 | 15 |
organism substance | 8.02e-14 | 15 |
extraembryonic structure | 6.93e-09 | 24 |