FFCP PHASE1:Hg19::chr3:122283100..122283153,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:122283100..122283153,- to FFCP PHASE1:Hg19::chr3:122283100..122283153,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83666 | |EntrezGene=83666 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24118 | |HGNC=24118 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9U8,Q8IXQ6 | |UniProt=G5E9U8,Q8IXQ6 | ||
|association_with_transcript=0bp_to_ENST00000492382,NM_001146102,NM_001146105,uc003eff.3,uc010hri.2_5end | |||
|cluster_id=chr3:122283100..122283153,- | |||
|coexpression_cluster_id=C413 | |||
|description=CAGE_peak_1_at_PARP9_5end | |||
|id=chr3:122283100..122283153,- | |||
|ontology_enrichment_celltype=CL:0002087!8.82e-23!119;CL:0000738!2.12e-22!140;CL:0002031!2.35e-21!124;CL:0000766!8.83e-20!76;CL:0002057!2.11e-19!42;CL:0000839!4.68e-18!70;CL:0002194!1.07e-17!63;CL:0000576!1.07e-17!63;CL:0000040!1.07e-17!63;CL:0000559!1.07e-17!63;CL:0000860!1.57e-16!45;CL:0002009!2.28e-16!65;CL:0002032!1.31e-15!165;CL:0000837!1.31e-15!165;CL:0000557!1.62e-15!71;CL:0000037!3.88e-15!172;CL:0000566!3.88e-15!172;CL:0000988!1.96e-13!182;CL:0002320!1.99e-10!365;CL:0000134!2.18e-10!358;CL:0000763!6.28e-10!112;CL:0000049!6.28e-10!112;CL:0000219!5.02e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.04e-14;33!CL:0002057;1.04e-14;33!CL:0000473;1.69e-14;39!CL:0000234;1.69e-14;39!CL:0000576;3.39e-13;48!CL:0000766;1.20e-10;69!CL:0002087;8.11e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,2.37e-25,115;CL:0000738,1.08e-24,136;CL:0002031,9.35e-24,120;CL:0000766,6.76e-23,72;CL:0000473,6.04e-22,48;CL:0000234,6.04e-22,48;CL:0000839,3.72e-21,66;CL:0002194,5.47e-21,59;CL:0000576,5.47e-21,59;CL:0000040,5.47e-21,59;CL:0000559,5.47e-21,59;CL:0002009,2.03e-19,61;CL:0000860,2.09e-19,42;CL:0002057,2.09e-19,42;CL:0000557,2.79e-18,67;CL:0002032,2.81e-17,161;CL:0000837,2.81e-17,161;CL:0000037,9.79e-17,168;CL:0000988,6.26e-15,177;CL:0000763,1.81e-11,108;CL:0000049,1.81e-11,108;CL:0002320,4.58e-11,361;CL:0000134,4.99e-11,354;CL:0000219,1.56e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.04e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.06e-22!102;UBERON:0003061!7.06e-22!102;UBERON:0002193!1.38e-21!112;UBERON:0002371!1.58e-14!80;UBERON:0002405!1.81e-13!115;UBERON:0004765!1.47e-12!101;UBERON:0001434!1.47e-12!101;UBERON:0001474!1.81e-12!86;UBERON:0002384!2.13e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.31e-24,98;UBERON:0003061,1.31e-24,98;UBERON:0002193,3.91e-24,108;UBERON:0002405,4.36e-19,93;UBERON:0002371,5.78e-17,76;UBERON:0004765,2.24e-15,90;UBERON:0001474,1.45e-14,82;UBERON:0001434,1.89e-14,100;UBERON:0002384,5.27e-10,371 | |||
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| ||
|short_description=p1@PARP9 | |||
}} | }} |
Latest revision as of 23:52, 19 September 2015
Short description: | p1@PARP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PARP9_5end |
Coexpression cluster: | C413_CD14_Smooth_gall_mesothelioma_meningioma_Fibroblast_Neutrophils |
Association with transcript: | 0bp_to_ENST00000492382, NM_001146102, NM_001146105, uc003eff.3, uc010hri.2_5end |
EntrezGene: | PARP9 |
HGNC: | 24118 |
UniProt: | G5E9U8Q8IXQ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 2.37e-25 | 115 |
leukocyte | 1.08e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 9.35e-24 | 120 |
myeloid leukocyte | 6.76e-23 | 72 |
defensive cell | 6.04e-22 | 48 |
phagocyte | 6.04e-22 | 48 |
myeloid lineage restricted progenitor cell | 3.72e-21 | 66 |
monopoietic cell | 5.47e-21 | 59 |
monocyte | 5.47e-21 | 59 |
monoblast | 5.47e-21 | 59 |
promonocyte | 5.47e-21 | 59 |
macrophage dendritic cell progenitor | 2.03e-19 | 61 |
classical monocyte | 2.09e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.09e-19 | 42 |
granulocyte monocyte progenitor cell | 2.79e-18 | 67 |
hematopoietic oligopotent progenitor cell | 2.81e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.81e-17 | 161 |
hematopoietic stem cell | 9.79e-17 | 168 |
hematopoietic cell | 6.26e-15 | 177 |
myeloid cell | 1.81e-11 | 108 |
common myeloid progenitor | 1.81e-11 | 108 |
connective tissue cell | 4.58e-11 | 361 |
mesenchymal cell | 4.99e-11 | 354 |
motile cell | 1.56e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.31e-24 | 98 |
blood island | 1.31e-24 | 98 |
hemolymphoid system | 3.91e-24 | 108 |
immune system | 4.36e-19 | 93 |
bone marrow | 5.78e-17 | 76 |
skeletal element | 2.24e-15 | 90 |
bone element | 1.45e-14 | 82 |
skeletal system | 1.89e-14 | 100 |
connective tissue | 5.27e-10 | 371 |