FFCP PHASE1:Hg19::chr3:112357766..112357771,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:112357766..112357771,- to FFCP PHASE1:Hg19::chr3:112357766..112357771,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:112357766..112357771,- | |||
|coexpression_cluster_id=C333 | |||
|description=CAGE_peak_at_chr3:112357766..112357771,- | |||
|id=chr3:112357766..112357771,- | |||
|ontology_enrichment_celltype=CL:0000057!1.42e-16!75;CL:0000055!1.27e-15!180;CL:0002620!5.51e-11!23;CL:0002334!9.51e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:1000306;9.78e-15;4!CL:0002547;9.78e-15;4!CL:0002579;8.36e-10;3!CL:0000135;1.56e-09;3!CL:0000388;1.56e-09;3!CL:0000136;4.93e-08;13!CL:0002616;1.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1000306,6.73e-15,4;CL:0002547,6.73e-15,4;CL:0002579,8.38e-10,3;CL:0000135,1.13e-09,3;CL:0000388,1.13e-09,3;CL:0000057,4.17e-08,76;CL:0002616,1.30e-07,1;CL:0000136,5.69e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.01e-09;3!DOID:127;2.01e-09;3!DOID:2513;1.74e-07;1!DOID:3369;1.74e-07;1!DOID:0060072;2.84e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.43e-09,3;DOID:127,2.43e-09,3;DOID:3369,9.44e-08,1;DOID:2513,2.04e-07,1;DOID:0060072,3.28e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002199!5.59e-09!45;UBERON:0002416!5.59e-09!45;UBERON:0002097!1.03e-07!40;UBERON:0003102!5.83e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;9.78e-15;4!UBERON:0000415;9.78e-15;4!UBERON:0007240;9.78e-15;4!UBERON:0005742;9.78e-15;4!UBERON:0005734;9.78e-15;4!UBERON:0004664;9.78e-15;4!UBERON:0004663;9.78e-15;4!UBERON:0004457;8.36e-12;9!UBERON:0000042;8.36e-12;9!UBERON:0003688;1.48e-10;6!UBERON:0002358;1.48e-10;6!UBERON:0003684;1.48e-10;6!UBERON:0001178;1.48e-10;6!UBERON:0007846;1.56e-09;3!UBERON:0000043;1.56e-09;3!UBERON:0007845;1.56e-09;3!UBERON:0007029;1.74e-07;1!UBERON:0000014;4.47e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,6.73e-15,4;UBERON:0007240,6.73e-15,4;UBERON:0005742,6.73e-15,4;UBERON:0005734,6.73e-15,4;UBERON:0004664,6.73e-15,4;UBERON:0004663,6.73e-15,4;UBERON:0003688,1.53e-10,6;UBERON:0002358,1.53e-10,6;UBERON:0003684,1.53e-10,6;UBERON:0001178,1.53e-10,6;UBERON:0007846,1.13e-09,3;UBERON:0000043,1.13e-09,3;UBERON:0007845,1.13e-09,3;UBERON:0004457,6.87e-09,12;UBERON:0000042,6.87e-09,12;UBERON:0004797,1.00e-08,7;UBERON:0007029,1.80e-07,1;UBERON:0000014,4.91e-07,4 | |||
|phase1_expression=0,2.99740733447376,0.986680828671798,3.00219895059391,0.446961094427288,1.74467704820074,0,0,1.04474251279935,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,1.00267582127178,0.724232594804119,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,1.98788780678127,1.2663051166458,1.85372853138506,2.86836620748814,0.709336764396714,0,0,0.49333509683432,0,0,0,0,0.576175924479999,0,0,0,0.149448680551801,0,0,0.280901613404497,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0.612975591598039,0,0,1.61450672119976,0.213557388818567,0.211931901159562,1.20036438433761,0.412210116953756,0.257640540045629,0.558350568994769,0.843881661206331,0.584622030967192,0.504867548488229,0.552299391853796,0.646584227275248,2.13005755509969,0.604512589365842,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0.479249710983165,0,0,1.01346914667305,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.49076596687656,0,0,0.207970861530807,0.535286966391485,0.157702415033935,0.234282829985426,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0.744323423456331,0.306923946576125,0.841980283299221,2.43464383585832,0,3.69964018630297,0,0.462629081407967,0.532685175939381,0.0821271560138091,1.55776328755086,0.232420756919918,0,0,0,0.574072240823034,0.182091168006717,1.96686622439136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.322260734604821,0.435050081742686,0.340906509664404,0.178064071293475,0.165284915360978,0,0,0.10115778085555,0.929691098594572,2.83331112147576,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0,0.487426979262569,2.11300293513511,0,1.1312434556297,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0.35667105148125,0,0.633322905892992,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.597743964753209,0,0,0,0,1.24415835064723,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.295547618953547,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0.429765441419957,0,0.558564802544508,0.916641696046735,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,1.08599920350743,0,2.61269888087527,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.701139929541673,0.554805861502613,0.378806010550178,0.50313580350515,0,0.915360273587694,0.907385542579434,0.15543720058278,0.147855149989634,0,0,0,0.829412415681711,1.06336685823198,0,0.150257608997218,0.761610424337591,0,0,0,0.464033759878494,0,0.400027764663154,0.686791410365586,0.673498977531838,0,0,0,0,0.906823702049089,0.231522474323834,0,0.358177682162975,0,1.75427239662966,0.353378291891762,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0.735444965261716,0,0,0,0,0.339854229375634,0,0,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0.436350690340377,0,1.85997509083376,0.924351257262837,3.02838593486652,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0.202117188958219,0.435433495793923,0.342233301085281,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,2.99740733447376,0.986680828671798,3.00219895059391,0.446961094427288,1.74467704820074,0,0,1.04474251279935,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0,1.00267582127178,0.724232594804119,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,1.98788780678127,1.2663051166458,1.85372853138506,2.86836620748814,0.709336764396714,0,0,0.49333509683432,0,0,0,0,0.576175924479999,0,0,0,0.149448680551801,0,0,0.280901613404497,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0.612975591598039,0,0,1.61450672119976,0.213557388818567,0.211931901159562,1.20036438433761,0.412210116953756,0.257640540045629,0.558350568994769,0.843881661206331,0.584622030967192,0.504867548488229,0.552299391853796,0.646584227275248,2.13005755509969,0.604512589365842,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0.479249710983165,0,0,1.01346914667305,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.49076596687656,0,0,0.207970861530807,0.535286966391485,0.157702415033935,0.234282829985426,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0.744323423456331,0.306923946576125,0.841980283299221,2.43464383585832,0,3.69964018630297,0,0.462629081407967,0.532685175939381,0.0821271560138091,1.55776328755086,0.232420756919918,0,0,0,0.574072240823034,0.182091168006717,1.96686622439136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.322260734604821,0.435050081742686,0.340906509664404,0.178064071293475,0.165284915360978,0,0,0.10115778085555,0.929691098594572,2.83331112147576,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0.42793898803392,0,0,0.179872457583315,0,0.117812402345686,0,0,0.421258456238981,0,0.487426979262569,2.11300293513511,0,1.1312434556297,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0.35667105148125,0,0.633322905892992,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.597743964753209,0,0,0,0,1.24415835064723,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0.295547618953547,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0.34945333648406,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0.429765441419957,0,0.558564802544508,0.916641696046735,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,1.08599920350743,0,2.61269888087527,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0.701139929541673,0.554805861502613,0.378806010550178,0.50313580350515,0,0.915360273587694,0.907385542579434,0.15543720058278,0.147855149989634,0,0,0,0.829412415681711,1.06336685823198,0,0.150257608997218,0.761610424337591,0,0,0,0.464033759878494,0,0.400027764663154,0.686791410365586,0.673498977531838,0,0,0,0,0.906823702049089,0.231522474323834,0,0.358177682162975,0,1.75427239662966,0.353378291891762,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0,0.60511520611056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0.735444965261716,0,0,0,0,0.339854229375634,0,0,0,0.178553938605658,0,0,0,0,0.143339583151451,0,0,0.436350690340377,0,1.85997509083376,0.924351257262837,3.02838593486652,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0.224263725161227,0,0.202117188958219,0.435433495793923,0.342233301085281,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr3:112357766..112357771,- | |||
}} | }} |
Latest revision as of 14:18, 29 July 2015
Short description: | p@chr3:112357766..112357771, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112357766..112357771, - |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of tunica adventitia of artery | 6.73e-15 | 4 |
fibroblast of the aortic adventitia | 6.73e-15 | 4 |
omentum preadipocyte | 8.38e-10 | 3 |
fibrocyte | 1.13e-09 | 3 |
tendon cell | 1.13e-09 | 3 |
fibroblast | 4.17e-08 | 76 |
perirenal adipocyte cell | 1.30e-07 | 1 |
fat cell | 5.69e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
artery wall | 6.73e-15 | 4 |
tunica adventitia of artery | 6.73e-15 | 4 |
adventitia | 6.73e-15 | 4 |
tunica adventitia of blood vessel | 6.73e-15 | 4 |
aorta tunica adventitia | 6.73e-15 | 4 |
aorta wall | 6.73e-15 | 4 |
omentum | 1.53e-10 | 6 |
peritoneum | 1.53e-10 | 6 |
abdominal cavity | 1.53e-10 | 6 |
visceral peritoneum | 1.53e-10 | 6 |
dense regular connective tissue | 1.13e-09 | 3 |
tendon | 1.13e-09 | 3 |
regular connective tissue | 1.13e-09 | 3 |
cavity lining | 6.87e-09 | 12 |
serous membrane | 6.87e-09 | 12 |
blood vessel layer | 1.00e-08 | 7 |
surface | 1.80e-07 | 1 |
zone of skin | 4.91e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.43e-09 | 3 |
leiomyoma | 2.43e-09 | 3 |
peripheral primitive neuroectodermal tumor | 9.44e-08 | 1 |
basal cell carcinoma | 2.04e-07 | 1 |
benign neoplasm | 3.28e-07 | 4 |